Benzylium versus tropylium ion dichotomy: vibrational spectroscopy of gaseous C8H9+ ions

Definitely different: the path towards sorting out a long-standing dichotomy in carbocation chemistry is disclosed by infrared multiple photon dissociation spectroscopy of tropylium and benzylium isomers of C(8)H(9)(+) ions.     

Gas-phase reactions of atomic lanthanide cations with D2O: room-temperature kinetics and periodicity in reactivity.

Reactions of atomic lanthanide cations (excluding Pm+) with D2O have been surveyed in the gas phase using an inductively coupled plasma/selected-ion flow tube (ICP/SIFT) tandem mass spectrometer to measure rate coefficients and product distributions in He at 0.35+/-0.01 Torr and 295+/-2 K. Primary reaction channels were observed corresponding to O-atom transfer, OD transfer and D2O addition. O-atom transfer is the predominant reaction channel and occurs exclusively with Ce+, Nd+, Sm+, Gd+, Tb+ and Lu+. OD transfer is observed exclusively with Yb+, and competes with O-atom transfer in the reactions with La+ and Pr+. Slow D2O addition is observed with early lanthanide cation Eu+ and the late lanthanide cations Dy+, Ho+, Er+ and Tm+. Higher-order sequential D2O addition of up to five D2O molecules is observed with LnO+ and LnOD+. A delay of more than 50 kcal mol(-1) is observed in the onset of efficient exothermic O-atom transfer, which suggests the presence of kinetic barriers of perhaps this magnitude in the exothermic O-atom transfer reactions of Dy+, Ho+, Er) and Tm+ with D2O. The reaction efficiency for O-atom transfer is seen to decrease as the energy required to promote an electron to make two non-f electrons available for bonding increases. The periodic trend in reaction efficiency along the lanthanide series matches the periodic trend in the electron-promotion energy required to achieve a d1s1 or d2 excited electronic configuration in the lanthanide cation, and also the periodic trends across the lanthanide row reported previously for several alcohols and phenol. An Arrhenius-like correlation is also observed for the dependence of D2O reactivity on promotion energy for early lanthanide cations, and exhibits a characteristic temperature of 2600 K.     

Evaluation of the efficiency of the concurrent use of IR and mass spectrometry databases for structure elucidation

The applicability of structural analogy to structure elucidation of organic compounds by searching two molecular spectroscopy databases (DBs) is examined. Using structural analogy is based on the representation of DB structures as sets of structural fragments. Of primary concern are the structural fragments that are represented in the search results of both infrared (IR) and mass spectroscopy (MS) DBs. The statistically justified estimates of the efficiency of the combined search depending on the spectral similarity are given.     

Hydration of the Calcium Dication: Direct Evidence for Second Shell Formation from Infrared Spectroscopy

Infrared laser action spectroscopy in a Fourier‐transform ion cyclotron resonance mass spectrometer is used in conjunction with ab initio calculations to investigate doubly charged, hydrated clusters of calcium formed by electrospray ionization. Six water molecules coordinate directly to the calcium dication, whereas the seventh water molecule is incorporated into a second solvation shell. Spectral features indicate the presence of multiple structures of Ca(H₂O)₇²⁺ in which outer‐shell water molecules accept either one (single acceptor) or two (double acceptor) hydrogen bonds from inner‐shell water molecules. Double‐acceptor water molecules are predominately observed in the second solvent shells of clusters containing eight or nine water molecules. Increased hydration results in spectroscopic signatures consistent with additional second‐shell water molecules, particularly the appearance of inner‐shell water molecules that donate two hydrogen bonds (double donor) to the second solvent shell. This is the first reported use of infrared spectroscopy to investigate shell structure of a hydrated multiply charged cation in the gas phase and illustrates the effectiveness of this method to probe the structures of hydrated ions.     

Unimolecular reactivity of strong metal-cation complexes in the gas phase: ethylenediamine-Cu(+)

The gas-phase reactions between ethylenediamine (en) and Cu(+) have been investigated by means of mass spectrometry techniques. The MIKE spectrum reveals that the adduct ions [Cu(+)(H(2)NCH(2)CH(2)NH(2))] spontaneously decompose by loosing H(2), NH(3) and HCu, the loss of hydrogen being clearly dominant. The spectra of the fully C-deuterated species show the loss of HD, NH(3) and CuD but no losses of H(2), D(2), NH(2)D, NHD(2), ND(3) or CuH are observed. This clearly excludes hydrogen exchange between the methylene and the amino groups as possible mechanisms for the loss of ammonia. Conversely, methylene hydrogen atoms are clearly involved in the loss of molecular hydrogen. The structures and bonding characteristics of the Cu(+)(en) complexes as well as the different stationary points of the corresponding potential energy surface (PES) have been theoretically studied by DFT calculations carried out at B3LYP/6-311+G(2df,2p)//B3LYP/6-311G(d,p) level. Based on the topology of this PES the most plausible mechanisms for the aforementioned unimolecular fragmentations are proposed. Our theoretical estimates indicate that Cu(+) strongly binds to en, by forming a chelated structure in which Cu(+) is bridging between both amino groups. The binding energy is quite high (84 kcal mol(-1)), but also the products of the unimolecular decomposition of Cu(+)(en) complexes are strongly bound Cu(+)-complexes.     

Structurally diagnostic ion/molecule reactions: class and functional-group identification by mass spectrometry

This article discusses the application of gas-phase ion/molecule reactions for fine structural elucidation in mass spectrometry. This approach is illustrated via a representative collection of class- and functional group-selective reactions, a few of historical relevance as well as by more recent and instructive examples, and their applications. The focus is on reactions performed under well-controlled conditions of sequential mass spectrometry, discussing key mechanistic details and potential applications. Recent and innovative strategies that allow these reactions to be performed under ambient conditions, making this fast, selective and sensitive approach for structural investigation much more generally applicable, are also discussed.     

Gas‐Phase Interactions between Lead(II) Ions and Cytosine: Tandem Mass Spectrometry and Infrared Multiple‐Photon Dissociation Spectroscopy Study

Gas‐phase interactions between Pb²⁺ ions and cytosine (C) were studied by combining tandem mass spectrometry, infrared multiple photon dissociation spectroscopy, and density functional theory (DFT) calculations. Both singly and doubly charged complexes were generated by electrospray. The [Pb(C)?H]⁺ complex was extensively studied, and this study shows that two structures, involving the interaction of the metal with the deprotonated canonical keto‐amino tautomer of cytosine, are generated in the gas phase; the prominent structure is the bidentate form involving both the N1 and O2 electronegative centers. The DFT study also points out a significant charge transfer from the nucleobase to the low‐lying p orbitals of the metal and a strong polarization of the base upon complexation. The various potential energy surfaces explored to account for the fragmentation observed are consistent with the high abundance of the [PbNH₂]⁺ fragment ion.     

Spectroscopic Identification of a Bidentate Binding Motif in the Anionic Magnesium–CO2 Complex ([ClMgCO2]−)

A magnesium complex incorporating a novel metal–CO₂ binding motif is spectroscopically identified. Here we show with the help of infrared photodissociation spectroscopy that the complex exists solely in the [ClMg(η²‐O₂C)]^? form. This bidentate double oxygen metal–CO₂ coordination has previously not been observed in neutral nor in charged unimetallic complexes. The antisymmetric CO₂ stretching mode in [ClMg(η²‐O₂C)]^? is found at 1128 cm^?1, which is considerably redshifted from the corresponding mode in bare CO₂ at 2349 cm^?1, suggesting that the CO₂ moiety has a considerable negative charge (～1.8 e^?). We also employed electronic structure calculations and kinetic analysis to support the interpretation of the experimental results.     

Infrared Spectrum of the Si3H8+ Cation: Evidence for a Bridged Isomer with an Asymmetric Three‐Center Two‐Electron Si?H?Si Bond

The IR spectrum of Si₃H₈⁺ ions produced in a supersonic plasma molecular beam expansion of SiH₄, He, and Ar is inferred from photodissociation of cold Si₃H₈⁺–Ar complexes. Vibrational analysis of the spectrum is consistent with a Si₃H₈⁺ structure ( 2⁺ ) obtained by a barrierless addition reaction of SiH₄ to the disilene ion (H₂Si?SiH₂⁺) in the silane plasma. In this structure, one of the electronegative H atoms of SiH₄ donates electron density into the partially filled electrophilic π orbital of the disilene cation. The resulting asymmetric Si? H? Si bridge of the 2⁺ isomer with a bond energy of approximately 60 kJ mol^?1 is characteristic for a weak three‐center two‐electron bond, which is identified by its strongly IR active asymmetric Si? H? Si stretching fundamental at about 1765 cm^?1. The observed 2⁺ isomer is calculated to be only a few kJ mol^?1 less stable than the global minimum structure of Si₃H₈⁺ ( 1⁺ ), which is derived from vertical ionization of trisilane. Although more stable, 1⁺ is not detected in the measured IR spectrum of Si₃H₈⁺–Ar, and its lower abundance in the supersonic plasma is rationalized by the production mechanism of Si₃H₈⁺ in the silane plasma, in which a high barrier between 2⁺ and 1⁺ prevents the efficient formation of 1⁺ . The potential energy surface of Si₃H₈⁺ is characterized in some detail by quantum chemical calculations. The structural, vibrational, electronic and energetic properties as well as the chemical bonding mechanism are investigated for a variety of low‐energy Si₃H₈⁺ isomers and their fragments. The weak intermolecular bonds of the Ar ligands in the Si₃H₈⁺–Ar isomers arise from dispersion and induction forces and induce only a minor perturbation of the bare Si₃H₈⁺ ions. Comparison with the potential energy surface of C₃H₈⁺ reveals the differences between the silicon and carbon species.     

Gas-phase spectroscopy of the unstable sulfur diisocyanate molecule S(NCO)2.

Sulfur diisocyanate is generated from a heterogeneous reaction of gaseous sulfur dichloride with silver cyanate and studied for the first time in the gas phase. Combined with quantum chemical calculations, the electronic structure is characterized by photoelectron spectroscopy (PES). Simultaneously, an investigation of the possible ionization and dissociation processes for the molecular cation is presented based on experimental soft ionization mass spectrometry. From the calculated bond-dissociation energies, the dissociation pathway is determined. S(NCO)2+ undergoes 1,3-sigmatropic rearrangement with a smaller barrier height (9.9 kcal mol(-1)) than the neutral counterpart. Thus, the 1,3-sigmatropic rearrangement is preferred for the molecular cation, and OCNCO+ and NS+ is produced by subsequent dissociation of the rearrangement product. The analysis agrees very well with the experimental mass spectrum.     

Infrared spectra of protonated uracil, thymine and cytosine.

The gas-phase structures of protonated uracil, thymine, and cytosine are probed by using mid-infrared multiple-photon dissociation (IRMPD) spectroscopy performed at the Free Electron Laser facility of the Centre Laser Infrarouge d'Orsay (CLIO), France. Experimental infrared (IR) spectra are recorded for ions that were generated by electrospray ionization, isolated, and then irradiated in a quadrupole ion trap; the results are compared to the calculated infrared absorption spectra of the different low-lying isomers (computed at the B3LYP/6-31++G(d,p) level). For each protonated base, the global energy minimum corresponds to an enolic tautomer, whose infrared absorption spectrum matched very well with the experimental IRMPD spectrum, with the exception of a very weak IRMPD signal observed at about 1800 cm(-1) in the case of the three protonated bases. This signal is likely to be the signature of the second-energy-lying oxo tautomer. We thus conclude that within our experimental conditions, two tautomeric ions are formed which coexist in the quadrupole ion trap.