An ab initio study of electronic spectra and excited-state properties of 7-azaindole in vapour phase and aqueous solution

The geometries of 7-azaindole (7AI), its tautomer (7AT), and 7AI–H₂O and 7AT–H₂O complexes were optimised in the ground state and some low-lying singlet excited states using the 3-21G basis set. Differences of total energies of the optimised ground and excited states and the vertical excitation energies of these systems were used to explain the observed electronic spectra. Effect of solvation of these systems in bulk water was studied using the polarized continuum model (PCM). The mode of binding of a water molecule in the S₂(n–π^*) excited state of 7AI was found to be quite different from those in its ground and π–π^* excited states. It is shown that crossing of the lowest two singlet excited-state potential surfaces S₁(π–π^*) and S₂(n–π^*) of 7AI occurs in the vapour phase under geometry relaxation while on interaction with water, the S₂(n–π^*) excited state is raised up appreciably going even above the S₃(π–π^*) excited state. Ground- and excited-state molecular electrostatic potential mapping was carried out, which led to valuable information regarding the nature of excited states of the above-mentioned systems.     

Assessing solvent effects on the singlet excited state lifetime of uracil derivatives: A femtosecond fluorescence upconversion study in alcohols and D2O

The excited state lifetimes of uracil, thymine and 5-fluorouracil have been measured using femtosecond UV fluorescence upconversion in various protic and aprotic polar solvents. The fastest decays are observed in acetonitrile and the slowest in aqueous solution while those observed in alcohols are intermediate. No direct correlation with macroscopic solvent parameters such as polarity or viscosity is found, but hydrogen bonding is one key factor affecting the fluorescence decay. It is proposed that the solvent modulates the relative energy of two close-lying electronically excited states, the bright ππ^* and the dark nπ^* states. This relative energy gap controls the non-radiative relaxation of the ππ^* state through a conical intersection close to the Franck–Condon region competing with the ultrafast internal conversion to the ground state. In addition, an inverse isotope effect is observed in D₂O where the decays are faster than in H₂O.     

Theoretical calculations and vibrational spectra of 1,4-benzodioxan in its S(1)(pi, pi*) electronic excited state

The structure and vibrational frequencies of 1,4-benzodioxan in its S₁(π, π^*) electronic state have been calculated using the GAUSSIAN 03 and TURBOMOLE programs. The results have been compared to experimental data and also to the ground state. Structural data for the T₁(π, π^*) state have also been calculated. The theoretical frequencies agree very well with the experimental values for the S₀ electronic ground state but are less accurate for the S₁ excited state. Nonetheless, they provide valuable guidance for excited state calculations.     

Excited state dipole moments and geometries of the bases of nucleic acids

CNDO/s-CI and VE-PPP methods have been employed to calculate the dipole moments of the bases of nucleic acids in the ground and excited states. A component analysis in terms of μ_hyb^(σ), μ_ch and μ_π has been done using the CNDO/s-CI method and these results have been compared with those obtained by the CNDO/2 and IEHT methods. It is observed that while the CNDO/2 and CNDO/s-CI methods give almost the same total dipole moments, component-wise their predictions are very different.Dipole moments of the molecules have also been studied for the lowest excited singlet and triplet π^* ← π states. It is observed that the conventional method of calculating dipole moments using changes of only the net charges in the excited state does not give correct results for uracil and thymine, for which experimental results are available. Considering deformed non-planar excited state geometries for these molecules, the observed excited state dipole moments have been explained. A method has been suggested to include the effects of non-planarity while calculating the properties of a complex molecule in a π^* ← π excited state. For adenine, guanine and cytosine, the excited state dipole moments are found to be smaller than the ground state values.     

A Quantum-Chemical Study on the Photochemical Properties of Azides of a Series of Heteroarenes from Pyridine to Dibenzoacridine in Neutral and Protonated Forms

Molecules of a series of heteroaromatic azides in the ground (S ₀) and the lowest excited singlet (S ₁) states were calculated by the PM3 semiempirical method. It was shown that in the S ₀ state, the azide group in all the azides has quasi-linear geometry and a significant positive charge on the two terminal nitrogen atoms. The azide photoactivity is determined by the population of the σ _NN ^* orbital in the excited state, which is unoccupied in the ground state. The population of this orbital was found to depend on the size and charge of the aromatic π system. For the initial members of this azide series, the σ _NN ^* orbital is populated in both neutral and protonated forms. This is consistent with the experimental data and means that these azides are photoactive. With an increase in the size of the aromatic system, the energetic gap between the σ _NN ^* orbital and LUMO increases. As a result, the σ _NN ^* orbital is not populated in the S ₁ state when a particular threshold size of the π system is achieved, and the azide becomes photo-inactive.__________Translated from Khimiya Vysokikh Energii, Vol. 39, No. 4, 2005, pp. 259–266.Original Russian Text Copyright © 2005 by Budyka, Oshkin.     

A theoretical study of photoinduced electron transfer between tetracyanoethylene and arene

 Ab initio calculations have been performed to investigate the state transition in photoinduced electron transfer reactions between tetracyanoethylene and biphenyl as well as naphthalene. Face-to-face conformations of electron donor–acceptor (EDA) complexes were selected for this purpose. The geometries of the EDA complexes were determined by using the isolated optimized geometries of the donor and the acceptor to search for the maximum stabilization energy along the center-to-center distance. The correction of interaction energies for basis set superposition error was considered by using counterpoise methods. The ground and excited states of the EDA complexes were optimized with complete-active-space self-consistent-field calculations. The theoretical study of the ground state and excited states of the EDA complex in this work reveals that the S₁ and S₂ states of the EDA complexes are charge–transfer (CT) excited states, and CT absorption which corresponds to the S₀→S₁ and S₀→S₂ transitions arise from π−π^* excitation. On the basis of an Onsager model, CT absorption in dichloromethane was investigated by considering the solvent reorganization energy. Detailed discussions on the excited state and on the CT absorptions were made. Received: 30 April 2001 / Accepted: 18 October 2001 / Published online: 9 January 2002     

Electronic structure,spectra, and mechanism of photodimerization of pyrimidine bases

Various electronic indices calculated by the CNDO /s-CI method for uracil, 5-fluorouracil, thymine, and cytosine and the Woodward-Hoffmann rule applied to the photodimerization of these molecules lead us to the following conclusions: (i) decrease of the C₅? C₆ bond order consequent to excitation is generally correlated with the photodimerization reaction for all the biological pyrimidines; (ii) excited pyrimidine molecules may be nonplanar and the excitation would be delocalized over both the molecules which photodimerize; (iii) electrostatic interactions may play a significant role in the initial stages of the photodimerization reaction; (iv) singlet precursors to the stable triplet photodimers may exist; and (v) electron density does not, in general, increase in the C₅? C₆ bond in the excited state as compared to the ground state, contradicting the proposals of some earlier workers. Hybrid population densities and σ-bond orders have been calculated for the first time for the molecules. Fluorine in 5-fluorouracil perturbs the hybrid populations as compared to those of uracil mainly in its vicinity.     

Experimental and Computational Analysis of Para-Hydroxy Methylcinnamate following Photoexcitation

Para-hydroxy methylcinnamate is part of the cinnamate family of molecules. Experimental and computational studies have suggested conflicting non-radiative decay routes after photoexcitation to its S₁(ππ*) state. One non-radiative decay route involves intersystem crossing mediated by an optically dark singlet state, whilst the other involves direct intersystem crossing to a triplet state. Furthermore, irrespective of the decay mechanism, the lifetime of the initially populated S₁(ππ*) state is yet to be accurately measured. In this study, we use time-resolved ion-yield and photoelectron spectroscopies to precisely determine the S₁(ππ*) lifetime for the s-cis conformer of para-hydroxy methylcinnamate, combined with time-dependent density functional theory to determine the major non-radiative decay route. We find the S₁(ππ*) state lifetime of s-cis para-hydroxy methylcinnamate to be ∼2.5 picoseconds, and the major non-radiative decay route to follow the [¹ππ*→¹nπ*→³ππ*→S₀] pathway. These results also concur with previous photodynamical studies on structurally similar molecules, such as para-coumaric acid and methylcinnamate.     

Investigation of the structure, the optical properties, and the photophysics of some indolocarbazoles having terminal aromatic rings

Structures, optical properties, and photophysics of ladder indolo[3,2-b]carbazoles substituted symmetrically by phenylene and thiophene rings have been investigated theoretically and experimentally. The ground state optimized structures were obtained using the density functional theory (DFT) as approximated by the B3LYP functional and employing the 6-31G^* basis set. All derivatives were found nonplanar in their electronic ground states. The character and the energy of the singlet–singlet electronic transitions have been investigated by applying the time-dependent density functional theory (TDDFT) to the correspondingly optimized-ground-state geometries. The ab initio restricted configuration interaction (singles) method (RCIS/6-31G^*) was adopted to obtain the first singlet excited-state structures (S₁) of the molecule. TDDFT calculations performed on the S₁ optimized geometries was used to obtain emission energies. UV–vis and fluorescence spectroscopies were analyzed in conjunction with theoretical calculations. The computed excitation and emission energies were found in reasonable agreement with the experimental absorption and fluorescence spectra. Finally, the photophysical behavior of the indolocarbazoles have been studied by means of steady state and time resolved fluorescence. The overall data have allowed the determination of the rate constants for the radiative and nonradiative decay processes. Both theoretical and experimental data show that the replacement of phenylene rings by thiophene units induces a red shift in the absorption and fluorescence spectra. This behavior is interpreted in terms of the electron donor properties of the thiophene ring. On the other hand, the change of the substitutional pattern, from 2,8 to 3,9, causes a significant hypsochromic shift of the absorption and fluorescence bands.     

Vibronic interaction and triplet state photophysics of phenylisatin and oxindole

Photophysical study of phenylisatin and oxindole triplet states have been made at room temperature and in different glasses at 77K. Qualitatively, in all respects the compounds have identical spectroscopic characteristics. Phosphorescence emission, excitation along with their polarization and lifetime suggest that a perturbation of the zero-point level of emitting state (³ππ*) by a close-lying triplet state (³nπ*) leads to a number of new spectral features. The experimental observations have been interpreted satisfactorily in terms of a switch (³ππ* state to ³nπ*) in the character of the lowest triplet states (T₁ and T₂) and also a similar switch in the character of the excited singlet states S₁ and S₂ for a change of glass matrix from MCH to ethanol. Invoking of first order and second order spin-orbit coupling explains the phosphorescence emission unambiguously.     

Assignment of electronic transitions by geometry optimization

Adiabatic excitation energies, excited state geometries, excited state charges, bond orders and dipole moments have been obtained for HCN, CO₂,H₂CO, HFCO, F₂CO, ethylene, trans-butadiene, furan, pyrrole and uracil using the SINDO1 semi-empirical method with configuration interaction. Our results generally agree with those ofab initio calculations and experiment satisfactorily. Geometry optimization is found to mix configurations differing in their allowedness in vertical excitation from the ground state, which in turn helps in the assignment of spectral transitions. TheV excited singlet state of trans-butadiene and various excited states of furan, pyrrole and uracil have been found to be appreciably non-planar. The single and double CC bonds are found to exchange positions due to the lowest triplet and singlet transitions of furan and pyrrole. The first triplet and first singlet transitions of uracil have been found to be of π-π* and π-σ* types respectively in agreement with recent experimental findings. On leave of absence from the Department of Physics, Banaras Hindu University, Varanasi-221005, India     

Theoretical studies on the properties of uracil and its dimer upon thioketo substitution

The influences of thioketo substitution on the properties of uracil monomer and dimer and their interactions with Zn²⁺ have been systematically investigated at the B3LYP/6-311+G^*level of theory. Those properties include the structural characteristics, acidities, ionization potentials, and singlet–triplet energy gaps of SU monomers and their dimers, where SU=2-thiouracil, 4-thiouracil, and 2,4-dithiouracil, respectively. Computational results suggest that thioketo substitution leads to an increase in the acidities of the N-H groups for both uracil and its dimer, where the N₁–H group is still the most acidic site relative to that of N₃–H group. However, the opposite behaviors are true for the ionization potentials and the singlet–triplet energy gaps of uracil monomer and its dimer, suggesting that thiouracils are more susceptible to radiation damage relative to the unsubstituted uracil. For uracil and 2-thiouracil, the corresponding triplet excited-state geometries are predicted to be highly nonplanar compared with the planar geometries of the ground state as well as 4-thiouracil and 2,4-dithiouracil upon triplet excitation. As a rule, the intermolecular H-bonds involving the sulfur atom directly have been influenced more significant than those the oxygen atom directly involved for U::U and SU::SU base pairs upon ionization and excitation. Additionally, Zn²⁺ binding is expected to lead to an increase in the stability of U::U and SU::SU base pairs.     

Theoretical study on geometry and spectroscopic properties of 1,1′-binaphthyl in the electronic ground and first excited singlet states

Equilibrium geometries for the electronic ground and first excited singlet states of 1,1'-binaphthyl have been calculated by minimization of the total energy with respect to all internal coordinates. Using these results, an interpretation of the fluorescence S₁→ S₀ and absorption spectra S_m ← S₀ and S_n ← S₁ in rigid and fluid solutions is given.For the first time the equilibrium geometry of the first excited singlet state of 1, 1′-binaphthyl has been calculated. On excitation to the S₁ state the dihedral angle θ between the two naphthalene moieties is de- creased from 61 ° to 41 °. A detailed survey of CH bond lengths in the S₀ and S₁ states has been given. This result should be of particular importance for the theoretical treatment of radiationless transitions.Using equilibrium geometries for the S₀ and S₁ states a satisfactory interpretation of the S_m ← S₀ and S_n ← S₁ absorption spectra as well as of the fluorescence spectra in fluid and rigid solutions can be given. Concerning the S_n ← S₁ absorption spectrum in fluid solution, the calculations predict a strong absorption (A ← B transition) in the still uninvestigated region of energies lower than 11000 cm^?1.From the results of this paper and of other calculations it can be concluded that the Warshel-Karplus method yields reliable equilibrium geometries for electronic ground and excited states of unsaturated hydrocarbons [22,23].     

Potent strategy towards strongly emissive nitroaromatics through a weakly electron-deficient core

Nitroaromatics seldom fluoresce. The importance of electron-deficient (n-type) conjugates, however, has inspired a number of strategies for suppressing the emission-quenching effects of the strongly electron-withdrawing nitro group. Here, we demonstrate how such strategies yield fluorescent nitroaryl derivatives of dipyrrolonaphthyridinedione (DPND). Nitro groups near the DPND core quench its fluorescence. Conversely, nitro groups placed farther from the core allow some of the highest fluorescence quantum yields ever recorded for nitroaromatics. This strategy of preventing the known processes that compete with photoemission, however, leads to the emergence of unprecedented alternative mechanisms for fluorescence quenching, involving transitions to dark nπ* singlet states and aborted photochemistry. Forming nπ* triplet states from ππ* singlets is a classical pathway for fluorescence quenching. In nitro-DPNDs, however, these ππ* and nπ* excited states are both singlets, and they are common for nitroaryl conjugates. Understanding the excited-state dynamics of such nitroaromatics is crucial for designing strongly fluorescent electron-deficient conjugates.

Dipyrrolonaphthyridinedione appended with para- or meta-nitrophenyl substituents exhibits strong fluorescence from a ¹ππ* S₁ state.     

A novel and specific fluorescence reaction for uracil

Facile and specific methods to quantify a nucleobase in biological samples are of great importance for diagnosing disorders in nucleic acid metabolism. In the present study, a novel fluorogenic reaction specific for uracil has been developed. The reaction was carried out in an alkaline medium containing benzamidoxime and K₃[Fe(CN)₆] which were heated for 2.0 min. Under the optimum reaction conditions, strong fluorescence was produced only from uracil, not from other many biogenic compounds tested such as cytosine, thymine, adenine, guanine, nucleobases, nucleosides, nucleotides, amino acids, saccharides, creatine, creatinine and urea. The sensitivity of this method was compared with a known fluorogenic reaction using phenacylbromide which does not react with uracil but reacts with cytosine, adenine and their analogues. The proposed uracil-specific reaction showed approximately 400-fold higher sensitivity than the phenacylbromide reaction. The lower detection limit of uracil by the present method was 100 pmol mL⁻¹, and a good linearity of the calibration curve was obtained up to 100 nmol mL⁻¹ uracil. Due to its high sensitivity and specificity, the quantitative determination of uracil was possible by the proposed fluorimetric method.     

Hydrogen-bonded Intramolecular Charge Transfer Excited State of Dimethylaminobenzophenone using Time Dependent Density FunctionalTheory

Density functional theory and time-dependent density-functional theory have been used to investigate the photophysical properties and relaxation dynamics of dimethylaminobenzophe-none (DMABP) and its hydrogen-bonded DMABP-MeOH dimer. It is found that, in non-polar aprotic solvent, the transitions from S₀ to S₁ and S₂ states of DMABP have both n→π^* and π→π^* characters, with the locally excited feature mainly located on the C=O group and the partial CT one characterized by electron transfer mainly from the dimethylaminophenyl group to the C=O group. But when the intermolecular hydrogen bond C=O…H-O is formed, the highly polar intramolecular charge transfer character switches over to the first excited state of DMABP-MeOH dimer and the energy difference between the two low-lying electronically excited states increases. To gain insight into the relaxation dynamics of DMABP and DMABP-MeOH dimer in the excited state, the potential energy curves for con-formational relaxation are calculated. The formation of twisted intramolecular charge trans-fer state via diffusive twisting motion of the dimethylamino/dimethylaminophenyl groups is found to be the major relaxation process. In addition, the decay of the S1 state of DMABP-MeOH dimer to the ground state, through nonradiative intermolecular hydrogen bond stretching vibrations, is facilitated by the formation of the hydrogen bond between DMABP and alcohols.     

The Influence of 4f Orbital Excitation in Eu(Fod)3 on Complexation with Sulfones in Benzene Solutions

Complexation of sulfones (S) with the -diketonate Eu(Fod)₃ (Fod–heptafluorodimethyloctanedione) in the ground and excited electronic states in benzene solutions was studied. The stability constants and thermodynamic parameters for the formation of complexes Eu(Fod)₃ · S in the ground state (K, H ₀, S ₀) and Eu(Fod)₃ ^* · S in the excited state (K*, H ₀ ^*, S ₀ ^*) were determined. The excitation of f–f transitions of Eu(III) was found to enhance the stability of Eu(Fod)₃ · S complexes, apparently due to an increase in the acceptor ability of the Eu(III) chelate. This fact confirms the involvement of the 4f orbital in the chemical bond formation. The compensation effect was observed for the thermodynamic parameters: S ₀ = (2.9 ± 0.3) × 10^–3H ₀ + (35.0 ± 4.0) in the ground and S ₀ ^* = (3.3 ± 0.3) × 10^–3H ₀ ^* + (49.0 ± 5.0) in the excited states of Eu(Fod)₃. It was shown that electronic excitation of the 4f orbital of Eu(Fod)₃ influences isotopic effects in complexation with sulfolanes.     

The S1 ← S0 0–0 transition energies of polychlorinated dibenzofurans (PCDFs) revisited: CIS(D) and MP2 calculations with correction for correlation energies

This paper reexamines the structures and energies of dibenzofuran and twenty PCDFs in S₁–S₃ states. It was demonstrated that, although the CIS method gives a false relative ordering of excited states, the false ordering can be remedied by the CIS(D) method. Moreover the CIS geometries of typical PCDF molecules reasonably agree with their SAC-CI geometries. It was found that molecules chlorinated at the 1- and 9-positions are twisted in the S₂ state but are planar in other states, except for 1,4,6,9-TeCDF and fully chlorinated dibenzofuran (OCDF). The twisted structure of 1,4,6,9-TeCDF occurs in the S₃ state, but the structure of OCDF is twisted in every state. We partitioned the molecule into the parent structure and four chlorine groups and measured the twist energy with reference to the ground state. Then, the S_i ← S₀ 0–0 transition energies (i = 1, 2) calculated using the CIS(D) and MP2 methods could be expressed as a multiple linear equation with components and twist energy. It was further confirmed that if the multiple linear equation is corrected for residual correlation energies of the parent structure, it can predict the S₁ ← S₀ 0–0 transition energies with high precision.     

Influence of Excitation of the Lanthanide 4 fShell on Complexation with Organic Substrates in Solutions: 1. The Complexation of the β-Diketonate Tris(heptafluorodimethyloctanedionato)europium(III) with Sulfoxides in Benzene Solutions

Complexation of sulfoxides R¹R²S=O with the -diketonate Eu(fod)₃(fod is heptafluorodimethyloctanedionato) in the ground and excited states in benzene solutions was studied. Excitation of Eu(fod)₃was found to increase the formation constants and to reverse the sign of the enthalpy of complexation. The compensation effect was observed for the thermodynamic parameters: S ₀= (3.4 ± 0.4) × 10^–3H ₀+ (50.0 ± 4.7) in the ground state and S ^* ₀= (3.2 ± 0.4) × 10^–3H ^* ₀+ (62.0 ± 0.6) in the excited state of Eu(fod)₃. The enhancement of the stability of the complexes [Eu(fod)^* ₃· R¹R²S=O] is due to an increase in the entropy of complexation upon excitation of f–ftransitions in Eu(III).     

Molecular Structure, Vibrational Spectrum and Ionization Energy of m-Dimethoxybenzene

The optimized molecular geometries of the three rotamers of m-dimethoxybenzene in the ground So and electronically excited Sl states were predicted by ab initio and density functional theory （DFF） calculations. Their vibrational spectra in the St state were studied by one color resonant two photon ionization （1C-R2PI） method, and their ionization energies were measured by two color resonant two photon ionization （2C-R2PI） experiment. The optimized molecular geometries showed that the total energy of conformer a was the lowest in the So state. Most of the active vibrations assigned from the 1C-R2PI spectrum were found to be of the in-plane ring modes. The ionization energies （IE） of conformers a, b and c were determined to be 63521, 64487 and 63755 cm^-1, respectively.