Kinetic studies of a catalyzed metalloporphyrin formation

Kinetics of the incorporation of mercury(II) ion in tetra (p-trimethylammoniumphenyl)porphine have been investigated in aqueous solution at 30.0°C and 0.2 M (NaNO₃) ionic strength. The reaction was found to be first order each in mercury(II) and the porphyrin. The forward (formation) and the reverse (dissociation) rate constants were found to be 1.9 ± 0.2 × 10³ M^?1 s^?1 and 7 ± 2 × 10⁶ M^?1 s^?1, respectively. Kinetics of zinc(II) incorporation in tetra(p-trimethylammoniumphenyl)porphine catalyzed by mercury(II) were also investigated. This catalysis is explained in terms of steady-state formation of mono mercury(II) porphyrin followed by zinc(II) displacement of mercury(II) ion from the porphyrin. Such a mechanism also illustrates the importance of porphyrin core deformation to metal incorporation.     

Conversion of aryl azides to O-alkyl imidates via modified Staudinger ligation

[reaction: see text] o-Carboalkoxy triarylphosphines are shown to react with aryl azides to provide Staudinger ligation products bearing O-alkyl imidate linkages. This is in contrast to alkyl azides whose ligation to o-carboalkoxy triarylphosphines has been reported to yield amide-linked materials. This extension of the Staudinger ligation for coupling of abiotic reagents under biocompatible conditions highlights the utility of commercially available triarylphosphines through which suitable linkers can be attached via an ester moiety.     

Synthesis of lariat-DNA via the chemical ligation of a dumbbell complex

[reaction: see text] An efficient synthesis of a medium-sized DNA lariat through the chemical ligation of a Y-shaped dumbbell precursor is described. The methodology requires only commercially available phosphoramidites and reagents and affords regioisomerically pure lariat molecules. Characterization of the lariat by T(m) analysis reveals that the molecule displays markedly enhanced thermal stability and unimolecular association-dissociation kinetics, consistent with DNA dumbbell behavior.     

The first phosphite complex of a metalloporphyrin

(Di­phenyl phosphite‐κO)(5,10,15,20‐tetra­phenyl­porphyrinato‐κ⁴N)­manganese(III) hexa­fluoro­antimonate(V), [Mn(C₄₄H₂₈N₄)(C₁₂H₁₁O₃P)](SbF₆), is the first example of a structurally characterized di­aryl or di­alkyl phosphite complex of a metal–porphyrin ion. The axial phosphite ligand binds to the Mn^III ion via the P=O O atom, affording a nominally five‐coordinate complex with an Mn—O distance of 2.120 (4) Å. The mean porphyrin Mn—N distance is 2.000 (4) Å and the Mn^III ion is displaced from the 24‐atom porphyrin mean plane by 0.1548 (13) Å towards the axial O atom. The porphyrin adopts a marked saddle conformation, with a small domed component. The saddle distortion of the porphyrin ligand reflects the tight back‐to‐back dimers formed in the lattice by pairs of neighboring cations. The `non‐covalent' dimers in the lattice exhibit an unusual (weak) η²‐type coordination of a pyrrole C=C bond from a neighboring mol­ecule, with Mn^III⃛C distances of 3.697 (5) and 3.537 (5) Å.     

Template assembled synthetic proteins: Condensation of a multifunctional peptide to a topological template via chemoselective ligation

A chemoselective ligation via oxime bond formation is used for the chemical synthesis of template assembled peptides according to the TASP (Template Assembled Synthetic Proteins) approach. Aminooxyacetylation of the multifunctional partial sequence Lys- Arg- Asp- Ser of lactoferrin and subsequent condensation in aqueous solution with a topological template containing four selectively addressable aldehyde functions as attachment sites gives readily access to the TASP molecule.     

Trifluoroacetyl-chlorin as a new chemosensor for alcohol/amine detection

Chlorophyll derivative possessing a trifluoroacetyl group at the 3-position was synthesized as a new chemosensor for alcohols and amines. Intense Q_y peak of the trifluoroacetyl-chlorin (701 nm in CHCl₃) showed blue shifts to 667 nm in MeOH and 665 nm in n-BuNH₂ due to the formation of the corresponding hemiacetal and hemiaminal with visible color changes. Thermodynamic parameters for the complexation between trifluoroacetyl-chlorin and n-BuNH₂ in CDCl₃ were determined to be ΔH = −48 kJ mol⁻¹ and ΔS = −147 J K⁻¹ mol⁻¹. Ratiometric fluorescence sensing of n-BuNH₂ in THF was also demonstrated.     

Glycopeptide ligation via direct aminolysis of selenoester

In this work, the selenoester of unprotected glycopeptide was readily prepared, and the direct aminolysis of glycopeptide selenoester was successfully applied to synthesize MUC1 mucin sequence.     

A circular dichroism detection of stereostructural change due to amine protonation

Aromatic amine conformation can be controlled by protonation and this process can be followed by circular dichroism measurements.     

Photoreduction of aromatic compounds via amine exciplexes

Many cata and peri condensed polynuclear aromatic compounds were reduced smoothly by sodium borohydride in absolute ethanol in the presence of a tertiary amine to give products in good yields.     

Synthesis of phosphinopeptides via the Mannich ligation

Phosphinopeptides are a class of unnatural peptides containing a tetrahedral phosphorus atom and have potential for use as enzyme inhibitors. A series of phosphinopeptides were synthesized via the Mannich-type reaction of aryldichlorophosphines, aldehydes, and N-protected amino amides or peptide amides and subsequent aminolysis with amino esters or peptide esters. The current method named the Mannich ligation is an efficient route to synthesis of phosphinopeptides through convergent condensation.     

Direct synthesis of a metalloporphyrin complex on a surface

We demonstrate that well-defined monolayers of a metal complex on a surface can be prepared by direct vapor deposition of the metal atoms on monolayers of the ligand. In particular, ordered monolayers of adsorbed tetraphenylporphyrin (2H-TPP) on a silver surface were exposed to cobalt vapors, resulting in the complexation of the metal by the porphyrin. The formation of the metal complexes was monitored by means of X-ray photoelectron spectroscopy (XPS), which reveals that this metalation reaction leads to a chemical equivalence of all four nitrogen atoms. The described in situ metalation provides a convenient way to produce adsorbed monolayers of more reactive (e.g., air- or solvent-sensitive) or thermally unstable metalloporphyrins that are difficult to evaporate or even to obtain as pure compounds at room temperature.     

Synthesis of a new estradiol-iron metalloporphyrin conjugate used to build up a new hybrid biocatalyst for selective oxidations by the ‘Trojan horse’ strategy

The synthesis of a new cationic iron metalloporphyrin-estradiol conjugate is reported. After a study of its association with the anti-estradiol antibody 7A3 by UV-visible spectroscopy, the influence of the antibody on the sulfoxidation of thioanisole by H₂O₂ catalyzed by the iron-metalloporphyrin has been investigated.     

Anti-Markovnikov hydroalkylation of allylic amine derivatives via a palladium-catalyzed reductive cross-coupling reaction

Palladium-catalyzed hydroalkylation of allylic amine derivatives by alkylzinc reagents is reported. This reductive cross-coupling reaction yields anti-Markovnikov products using a variety of allylic amine protecting groups. Preliminary mechanistic studies suggest that a reversible β-hydride elimination/hydride insertion process furnishes the primary Pd-alkyl intermediate, which then undergoes transmetalation followed by reductive elimination to form a new sp(3)-sp(3) carbon-carbon bond.     

Colorimetric Cu2+ detection with a ligation DNAzyme and nanoparticles

Using a Cu(2+)-dependent DNA ligation DNAzyme, a colorimetric sensor for Cu2+ has been developed based on directed assembly of DNA-functionalized gold nanoparticles by the ligation product, and such ligation DNAzyme-based sensors are intrinsically more sensitive than cleavage DNAzyme systems due to the lack of background.     

Electrical detection of single methylcytosines in a DNA oligomer

We report label-free electrical detections of chemically modified nucleobases in a DNA using a nucleotide-sized electrode gap. We found that methyl substitution contributes to increase the tunneling conductance of deoxycytidines, which was attributed to a shift of the highest occupied molecular orbital level closer to the electrode Fermi level by methylation. We also demonstrate statistical identifications of methylcytosines in an oligonucleotide by tunneling current. This result suggests a possible use of the transverse electron-transport method for a methylation level analysis.     

Fluorophore targeting to cellular proteins via enzyme-mediated azide ligation and strain-promoted cycloaddition

Methods for targeting of small molecules to cellular proteins can allow imaging with fluorophores that are smaller, brighter, and more photostable than fluorescent proteins. Previously, we reported targeting of the blue fluorophore coumarin to cellular proteins fused to a 13-amino acid recognition sequence (LAP), catalyzed by a mutant of the Escherichia coli enzyme lipoic acid ligase (LplA). Here, we extend LplA-based labeling to green- and red-emitting fluorophores by employing a two-step targeting scheme. First, we found that the W37I mutant of LplA catalyzes site-specific ligation of 10-azidodecanoic acid to LAP in cells, in nearly quantitative yield after 30 min. Second, we evaluated a panel of five different cyclooctyne structures and found that fluorophore conjugates to aza-dibenzocyclooctyne (ADIBO) gave the highest and most specific derivatization of azide-conjugated LAP in cells. However, for targeting of hydrophobic fluorophores such as ATTO 647N, the hydrophobicity of ADIBO was detrimental, and superior targeting was achieved by conjugation to the less hydrophobic monofluorinated cyclooctyne (MOFO). Our optimized two-step enzymatic/chemical labeling scheme was used to tag and image a variety of LAP fusion proteins in multiple mammalian cell lines with diverse fluorophores including fluorescein, rhodamine, Alexa Fluor 568, ATTO 647N, and ATTO 655.     

Peroxidatic activity of metalloporphyrin binding to serum albumin: Enhancement effect of serum albumin on metalloporphyrin catalyzed luminol chemiluminescence reaction

The metalloporphyrin (M-P) catalyzed luminol-H₂O₂ chemiluminescence (CL) system can be significantly enhanced in the presence of serum albumins. The enhancement may be explained in terms of the formation of a molecular complex between M-P and serum albumin. The hydrophobic and coordination interactions between M-P and serum albumin were confirmed by comparing the degree of enhancement by the protein on different types of M-P catalyzed CL reactions and by comparing the catalytic activity of M-P/bovine serum albumin (BSA) and M-P/BSA/anti-BSA complexes. Only the non-ionic M-P catalyzed CL reaction was significantly enhanced, and the enhanced CL reaction was inhibited by an immunoreaction. The optimum conditions of the M-P/albumin complex catalyzed CL reaction were evaluated by using a flow-injection system, which was very similar to that using hemoglobin as the catalyst. A brief prospective on the general applicability of the enhanced CL reaction for the determination of serum albumin (2.5–500 μg/ml) is given.     

Supramolecular peapods composed of a metalloporphyrin nanotube and fullerenes

An acyclic dimer of a dendritic zinc porphyrin bearing six carboxylic acid functionalities (1acid) interacts with fullerenes, such as C60 and C70, to form "supramolecular peapods", composed of a hydrogen-bonded zinc porphyrin nanotube and fullerenes (3). According to TEM, the peapods are very long (>1 mum) and have a uniform diameter of 15 nm. Without fullerenes, the zinc porphyrin dimer forms only a heavily entangled, irregular assembly. In contrast with 1acid, an ester version of the acyclic dimer without hydrogen-bonding capability (1ester) hardly interacts with fullerenes.     

Chemical synthesis of Ub-AMC via ligation of peptide hydrazides

The C-terminal conjugate of ubiquitin with 7-amino-4-methylcoumarin (Ub-AMC) is an important probe for fluorescencebased analysis of deubiquitinating enzyme (DUB) activity. It is important to develop more efficient methods for the preparation of Ub-AMC because the currently available technology is still expensive for scaled-up production. In the present work we report an efficient strategy for total chemical synthesis of Ub-AMC through ligation of peptide hydrazides. Three peptide segments are assembled via N-to-C sequential ligation and the resulting product is converted to Ub-AMC via TCEP-mediated desulfurization. The synthetic Ub-AMC is shown to have expected biological functions throug     

多肽酰肼连接法合成C端香豆素修饰的泛素

C端用香豆素修饰的泛素分子（Ub-AMC）是研究蛋白质泛素化过程的重要探针.该探针分子的制备目前主要依靠生物表达结合化学修饰的方法,合成效率较低.本文使用多肽酰肼连接反应,发展出化学全合成Ub-AMC分子的新路线.该方法通过N到C顺序两次连接实现了目标分子的组装,再通过自由基脱硫反应得到天然结构的Ub-AMC分子,有望实现较大量的合成.通过酶学活性实验,证实了通过新方法合成的Ub-AMC具有预期的生物活性.