Photofragmentation of Isoleucine by Vacuum Ultraviolet Photoionization

Vacuum ultraviolet photon-induced ionization and dissociation of isoleucine are investi-gated with synchrotron radiation photoionization mass spectroscopy and theoretical cal-culations. The main fragment ions at m/z=86, 75, 74, 69, 57, 46, 45, 44, 41, 30, 28, and 18 from isoleucine are observed in the mass spectrum at the photon energy of 13 eV. From the photoionization e±ciency curves, appearance energies for the principal fragment ions C₅H₁₂N⁺ (m/z=86)、C₂H₅NO₄⁺ (m/z=75)、C₅H₉⁺ (m/z=69)、C₄H₉⁺(m/z=57), and CH₄N⁺(m/z=30) are determined to be 8.84±0.07, 9.25±0.06, 10.20±0.12, 9.25±0.10, and 11.05±0.07 eV, respectively, and possible formation pathways are established in detail by the calculations at the B3LYP/6-31++G(d, p) levels. These proposed channels include simple bond cleavage reactions as well as reactions involving intermediates and transition structures. The experimental and computational appearance energies or barriers are in good agreement.     

Experiments and Calculations on Photoionization and Dissociative Photoionization of CH2CO

The dissociative photoionization of molecular‐beam cooled CH₂CO in a region of ?10–20 eV was investigated with photoionization mass spectrometry using a synchrotron radiation as the light source. Photoionization efficiency curves of CH₂CO⁺ and of observed fragment ions CH₂⁺, CHCO⁺, HCO⁺, C₂O⁺, CO⁺, and C₂H₂⁺ were measured to determine their appearance energies. Relative branching ratios as a function of photon energy were determined. Energies for formation of these observed fragment ions and their neutral counterparts upon ionization of CH₂CO are computed with the Gaussian‐3 method. Dissociative photoionization channels associated with six observed fragment ions are proposed based on comparison of determined appearance energies and predicted energies. The principal dissociative processes are direct breaking of C=C and C‐H bonds to form CH₂⁺ + CO and CHCO⁺ + H, respectively; at greater energies, dissociation involving H migration takes place.     

Effects of stereoisomerism in the mass spectra of 2,4-disubstituted thiacyclohexanes

The mass spectra of cis- (Ia-c) and trans-2-methyl-4-R-thiacyclohexanes (IIa-c; a R = n-C₄H₉, b R = n-C₅H₁₁, c R = Ph) were studied. It was established that [M-CH₃]⁺ ions, which correspond to the loss of a methyl group from the 2 position, are formed more readily in the case of the less stable trans isomers IIa-c than in the case of cis isomers Ia-c. The three-dimensional structures of the substances have no effect on the degree of elimination of the R substituent. The relative ionization energies (RIE) for Ia,b and IIa,b and the relative appearance energies (RAE) of the [M-CH₃]⁺ ions were measured by the electron impact method. It was found that the RIE are almost 0.05 eV lower and that the RAE of the [M-CH₃]⁺ ions are 0.1 eV lower for trans isomers IIa,b than for cis isomers Ia,b.Communication 4 from the series Ionization and appearance energies in organic chemistry, See [1] for Communication 3.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 3, pp. 333–338, March, 1981.     

The distonic ions HO+CHCH2C˙H2 and CH3C(O+H)CH2C˙H2

The distonic ions HO⁺?CHCH₂C^˙H₂ (1) and CH₃C(?O⁺H)CH₂C^˙H₂ (2) were directly generated, their decompositions characterized and their appearance energies determined by photoionization. Heats of formation derived from the appearance energies were 757 kJ mol^?1 for 1 and 692 kJ mol^?1 for 2. Deuterium labeling demonstrates that both ions decompose at low energies in the same ways as their isomers with the same skeletal structures, consistent with proposals that 1 and 2 are intermediates in the decompositions of those systems. Surprisingly, the values of the translational energy releases accompanying the formation of CH₃CO⁺ and C₂H₅CO⁺ from 2 appear to be inversely proportional to the available excess energy. The 1,2-H-shift RC(?O⁺H)CH₂C˙H₂ → RC(?O₊H)C˙HCH₃ is compared to the corresponding, non-occurring 1,2-H-shift in alkyl free radicals.     

Collisionally activated dissociation of 2,4,6-triphenylpyridinium cations

Thresholds for the appearance of fragment ions allowed the estimation of threshold fragmentation energies (TFE) for the collisionally activated dissociation (CAD) in the gas phase of laser-desorbed pyridine-ring substituted N-benzylpyridinium cations to form pyridine and a carbocation. p-Methylbenzylpyridinium cation underwent an alternative CAD into pyridinium cation and the p-quinodimethane. The TFE are discussed in comparison with the energy differences (ΔΔH_f = ΔH_f(Py) + ΔH_f(R⁺) ? ΔH_f(Py ⁺R) calculated by the AM1 method to provide strong evidence for benzyl to tropylium cation rearrangement in an ion-molecule pair.     

A thermochemical study of dissociative ionization of 4,4-dimethyl-1-thia-4-silacyclohexane and 2,3,3-trimethyl-1-thia-3-silacyclopentane. Decomposition pathways to produce a dimethylsilanethione ion-radical [Me2SiS]+•

The dissociative ionization of 4,4-dimethyl-1-thia-4-silacyclohexane (I) and 2,3,3-trimethyl-1-thia-3-silacyclopentane(II) has been studied by electron photoionization (PI) mass spectrometric methods. The molecular ion fragmentation is mainly related to the loss of ethylene and results in a [Me₂SiSC₂H₄]^+? (m/z 118) ion-radical (A). Further loss of ethylene from A produces a dimethylsilanethione [Me₂SiS]^+? (m/z 90) ion-radical (B). The latter is the most abundant ion in the mass spectra of I and II at 70 eV.The ionization energies (IE) of I (8.22 ± 0.07 eV) and II (8.06 ± 0.03 eV) and the appearance energies (AE) of ion-radicals A and B have been determined. Also, the following heats of formation were calculated (kJ/mol): ΔH_f⁰(I) = ?31.1; ΔH_f⁰(II) = ?65.8; ΔH_f⁰(M_I^+?) = 762.0; ΔH_f⁰(M_II^+?)= 712.1; ΔH_f⁰(A)_aver = 780.2; ΔH_f⁰(B)_aver = 847.7.     

Electron impact ionization of unstable enols: H2CCHOH,H2CC(OH)?CH3 and H2CC(OH)?C2H5

Ethenol, 2-hydroxypropene and 2-hydroxybutene-1 were prepared by low-pressure pyrolysis of cyclobutanol, 1-methylcyclobutanol and 1-ethylcyclobutanol, respectively. Mass spectra, ionization energies, appearance energies of metastable ions and kinetic energy releases were determined on a reverse Nier-Johnson double-focusing mass spectrometer. Mercury and CH₃ radicals from the pyrolysis of dimethylmercury were employed for calibration of the energy scale. The ionization energy of 2-hydroxybutene-1 is 8.55 ± 0.1 eV and the appearance energies of [C₂H₅CO]⁺ and [CH₃CO]⁺ from that molecule are 10.25 ± 0.1 and 10.40 ± 0.1 eV, respectively. Changes observed in metastable peak shapes for certain fragmentation reactions upon pyrolysis are discussed.     

Potential energy profiles for the unimolecular reactions of [C3H7S]+ Ions

Appearance energies were measured for several types of [C₃H₇S]⁺ ions. From these appearance energy values the heats of formation of the ions were calculated. For the isomeric ions that could not be generated in the mass spectrometer, the heats of formation were estimated by means of the isodesmic substitution method. Transition state energies for the decomposition to C₂H₄ and [CH₃S]⁺ along two pathways were determined from the appearance energies of these ions. Using the energy values, potential energy diagrams were constructed for the rearrangements and decompositions of the [C₃H₇S]⁺ ions. A supplementary ¹³C Clabelling experiment is described for the determination of the rearrangement pathway of [CH₃CH₂CH?SH]⁺ ions prior to decomposition.     

Processes of hydrogenation of trifluoromethylfullerenes in the mass spectrometer ion source

The processes of hydrogenation of a mixture of trifluoromethylfullerenes was studied in situ by means of positive-and negative-ion mass spectrometry. The effective addition of 1, 5, and 11 hydrogen atoms was revealed. The appearance energies of positive trifluoromethylfullerene ions C ₆₀ (CF₃) _n ⁺ (n = 1–8) and C₆₀(CF₃) _n H⁺ (n = 1, 3, 5, 7) were determined.     

Dissociative photoionization of isoprene: experiments and calculations

Vacuum ultraviolet (VUV) dissociative photoionization of isoprene in the energy region 8.5–18 eV was investigated with photoionization mass spectroscopy (PIMS) using synchrotron radiation (SR). The ionization energy (IE) of isoprene as well as the appearance energies (AEs) of its fragment ions C₅H₇⁺, C₅H₅⁺, C₄H₅⁺, C₃H₆⁺, C₃H₅⁺, C₃H₄⁺, C₃H₃⁺ and C₂H₃⁺ were determined with photoionization efficiency (PIE) curves. The dissociation energies of some possible dissociation channels to produce those fragment ions were also determined experimentally. The total energies of C₅H₈ and its main fragments were calculated using the Gaussian 03 program and the Gaussian‐2 method. The IE of C₅H₈, the AEs for its fragment ions, and the dissociation energies to produce them were predicted using the high‐accuracy energy model. According to our results, the experimental dissociation energies were in reasonable agreement with the calculated values of the proposed photodissociation channels of C₅H₈. Copyright © 2009 John Wiley & Sons, Ltd.     

Ab initio calculations on the clustering energies and stable structures of H(M)+ + M → H(M)2+ (M = CO and N2)

The clustering energies of the reactions, H(M)⁺+ M → H(M)⁺₂ (M = CO and N₂), were calculated by ab initio single configuration LCAO SCF MO and SCEP methods. The calculated energies are in good agreement with the experimental enthalpies.     

Photoelectron emission spectroscopy of liquid water

The threshold energy E_t = 10.06 eV (0.002 eV standard deviation) is determined for photoelectron emission by liquid water and is correlated with E_t = 8.45 eV for OH^? (aq). Free energy changes and standard reduction potentials are calculated for both emission processes. Reorganization free energies are correlated to solvation free energies for H₂O⁺(aq) and OH^?(aq).     

Vacuum Ultraviolet Photoionization and Dissociative Photoionization of Capecitabine, 50-Deoxy-5-'uorocytidine,and 50-Deoxy-5-'uorouridine

Vacuum ultraviolet (VUV) photoionization and dissociative photoionization of capecitabine and its metabolites, 5'-deoxy-5-fluorocytidine (5'-DFCR) and 50-deoxy-5- fluorouridine (5'-DFUR), were investigated with infrared laser desorption/tunable synchrotron VUV pho-toionization mass spectrometry. Molecular ions (M+) with small amounts of fragments can be found for these compounds at relatively low photon energies, while more fragment ions would be produced by increasing the photon energies. (M-H₂O)⁺, (base+H)⁺, (base+2H)⁺,(base+30)⁺, (base+60)⁺, and sugar moiety were proposed for these nucleoside drugs with similar backbones. Decomposition channels for the major fragments were discussed in de-tail. Moreover, ab initio calculations were introduced to study the dehydration pathways of three fluoro-nucleosides. Corresponding appearance energies for the (M-H₂O)⁺ ions were computed.     

Cations of halogenated methanes: adiabatic ionization energies, potential energy surfaces, and ion fragment appearance energies

The DFT-B3LYP and G3X model chemistry were used to predict the cation structures and energetics of fluorinated, chlorinated, and brominated methanes. Ion–complex structures between methylene cations and HX (X = F, Cl, Br) were found for all H-containing cations, and [CHF–FH]⁺, [CF₂–FH]⁺, [CCl₂–ClH]⁺, and [CCl₂–FH]⁺ structures are more stable than their normal tetravalent structures. Several cations should also be better described as ion–complex structures between methyl cations and halogen atoms, e.g., [CF₃–Br]⁺. Transition states connecting normal and ion–complex structures were also located, and potential energy diagrams were constructed for decomposition of methane cations and to predict the fragmentation pathways. The G3X energies were used to predict the adiabatic ionization energies (IE_as) and ion fragment appearance energies (AEs) from methanes. Many of the experimental AEs correspond to the energies of transition states instead of the thermodynamic dissociation limits. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

The effect of basis set superposition error on the convergence of interaction energies

 For the intermolecular interaction energies of ion-water clusters [OH⁻(H₂O) _n (n=1,2), F⁻(H₂O), Cl⁻(H₂O), H₃O⁺(H₂O) _n (n=1,2), and NH₄ ⁺(H₂O) _n (n=1,2)] calculated with correlation-consistent basis sets at MP2, MP4, QCISD(T), and CCSD(T) levels, the basis set superposition error is nearly zero in the complete basis set (CBS) limit. That is, the counterpoise-uncorrected intermolecular interaction energies are nearly equal to the counterpoise-corrected intermolecular interaction energies in the CBS limit. When the basis set is smaller, the counterpoise-uncorrected intermolecular interaction energies are more reliable than the counterpoise-corrected intermolecular interaction energies. The counterpoise-uncorrected intermolecular interaction energies evaluated using the MP2/aug-cc-pVDZ level is reliable. Received: 14 March 2001 / Accepted: 25 April 2001 / Published online: 9 August 2001     

RELATIVE GROUND AND EXCITED STATE ENERGIES OF CH3(CH=CH)5CH=NC4H9, ITS HYDROGEN-BONDED AND PROTON-TRANSFERRED SPECIES,AND CHARGE PARTITIONING AND DISTRIBUTION IN THE PROTONATED SCHIFF BASE OF RETINAL*

Abstract— CH₃(CH=CH)₅CH=NC₄H₉ (compound 1) is structurally related to the Schiff base of retinal, the prosthetic group in visual pigments. Dilute solutions of a weak acid (phenol) and 1 in a hydrocarbon solvent, when subjected to decreasing temperature, show striking changes in electronic absorption spectra. Initially only the spectrum of compound 1 is present, but as the temperature is lowered, the absorbance of 1 decreases, and the spectrum of the H-bonded form of 1 appears and increases. Continued temperature lowering then causes a decrease in absorption of the H-bonded form and an appearance and rise in absorption of the proton-transfcrred form of 1. Concentrations of the various species are measured as a function of temperature, and by standard procedures, the thermodynamic constants for both reaction steps are computed. Values of Δ⁰ are taken as relative energies among the three ground states, and the λ_max value of each species yields relative energies among excited states. By employing data from electronic absorption spectroscopy, nuclear magnetic resonance (NMR) and theoretical calculations for retinal Schiff base, charge partitioning between nitrogen and the polyene chain and charge distribution among the carbon atoms of the polyene chain are calculated.     

Plenary lecture: Ion enthalpies and their application in mass spectrometry

The experimental determination of ionization and appearance energies is discussed, together with the calculation of heats of formation of ions. Results are presented for the ions [C_nH_2n+1]⁺, [C_nH_2n+2N]⁺ and [C_nH_2n+1O]⁺. The low temperature (～350K), low energy (12.1eV) mass spectra of some alkanes, amines and alcohols are presented and discussed.     

Electronic structures of NbGen−/0/+ (n = 1–3) clusters from multiconfigurational CASPT2 and density matrix renormalization group-CASPT2 calculations

Density functional theory and multiconfigurational CASPT2 and density matrix renormalization group DMRG-CASPT2 have been employed to study the low-lying states of NbGe_n^−/0/+ (n = 1–3) clusters. With the DMRG-CASPT2 method, the active spaces are extended to a size of 20 orbitals. For most of the states, the CASPT2 relative energies are comparable with the DMRG-CASPT2 results. The leading configuration, bond distances, vibrational frequencies, and relative energies of the low-lying states of these clusters were calculated. The ground states of these clusters were computed to be ³Δ, ⁴Φ, and ⁵Φ of NbGe^−/0/+; ³A₂, ⁴B₁, and ³B₁ of cyclic-NbGe₂^−/0/+; and ¹A′, 1²A″ and 1²A′′ (²E), and ³A″ of tetrahedral-NbGe₃^−/0/+ isomers. For NbGe cluster, our calculations proposed that the ⁶∑ is almost degenerate with the ⁴Φ with the CASPT2 and DMRG-CASPT2 relative energies of 0.05 and 0.06 eV. The adiabatic detachment energies of NbGe_n⁻ (n = 1–3) clusters were estimated to be 1.46, 1.55, and 2.18 eV by the CASPT2 method. The relevant detachment energies of the anionic ground state and the ionization energies of the neutral ground states are evaluated at the CASPT2 level.     

Heat of formation for sec-butyl cation in the gas phase

The ionization energies and [C₄H₉]⁺ appearance energies for several 2-substituted butanes have been measured by photoionization mass spectrometry. Using the stationary electron convention, a 298 K heat of formation of 771±3 kJ mol^?1 is derived for the sec-butyl cation in the gas phase. A value of 747±3 kJ mol^?1 is calculated for the proton affinity of trans-2-butene.     

Structural dependencies of pyramidal inversion at sulphur and selenium in thio- and seleno- ether complexes of palladium(II) and platinum(II): A nuclear magnetic resonance study

Total NMR band shape fitting methods have provided accurate energy data for inversion barriers at sulphur and selenium in complexes of types cis-[MX₂L] (M = Pd^II, Pt^II; X = Cl, Br, I; L = MeS(CH₂)₂SMe, MeS(CH₂)₃SMe, o-(SMe)₂C₆H₃Me, cis-MeSCH=CHSMe) and [PtXMe{MeE(CH₂)₂E′Me}] (E= E′= S or Se and E = S, E′= Se; X = Cl, Br, I). Barrier energies were found to decrease by 10–12 kJ mol^?1 in going from aliphatic through aromatic to olefinic ligand back-bone. This can be explained in terms of (3p - 2p) π conjugation between the inverting centre and the ligand back-bone. The effects of ligand ring size, nature of halogen atom and the metal oxidation state on the barrier energies are discussed.