Density functional theory study of the rotational barriers,conformational preference,and vibrational spectra of 2-formylfuran and 3-formylfuran

The torsional potentials, molecular structures, conformational stability, and vibrational wavenumbers for the rotational isomers of 2-formylfuran and 3-formylfuran are computed using the density functional theory (B3LYP) method with the 6-31+G* basis set. All structures are fully optimized and the optimized geometries, rotational constants, dipole moments, and energies are presented. From the computations, both 2-formylfuran and 3-formylfuran are predicted to exist predominantly in trans conformation with a cis–trans rotational barrier of 11.19 kcal/mol and 8.10 kcal/mol, respectively. The vibrational wavenumbers and the corresponding vibrational assignments of the molecules in the C _s symmetry are examined and the infrared spectra of the molecules are simulated using the wavenumbers and the corresponding intensities obtained from the computations. The effect of solvents on the conformational stability of all the molecules in nine different solvents (heptane, chloroform, tetrahydrofuran, dichloroethane, acetone, ethanol, methanol, dimethylsulfoxide, and water) is investigated. The integral equation formalism in the polarizable continuum model (IEF-PCM) is used for all solution phase computations.     

Density functional theory studies of conformational stabilities and rotational barriers of 2- and 3-thiophenecarboxaldehydes

The molecular structures, conformational stabilities, and infrared vibrational wavenumbers of 2-thiophenecarboxaldehyde and 3-thiophenecarboxaldehyde are computed using Becke-3–Lee–Yang–Parr (B3LYP) with the 6-311++G** basis set. From the computations, cis-2-thiophenecarboxaldehyde is found to be more stable than the transfer conformer with an energy difference of 1.22 kcal/mol, while trans-3-thiophenecarboxaldehyde is found to be more stable than the cis conformer by 0.89 kcal/mol. The computed dipole moments, structural parameters, relative stabilities of the conformers and infrared vibrational wavenumbers of the two molecules coherently support the experimental data in the literature. The normal vibrational wavenumbers are characterized in terms of the potential energy distribution using the VEDA4 program. The effect of solvents on the conformational stability of the molecules in nine different solvents is investigated using the polarizable continuum model.     

Synthesis of Tetrahydrothiophene 1,1-Dioxides Fused to Oxazolidin-2-one and Morpholin-2-one Fragments

While developing methods of synthesis of sulfolanes fused through the C³–C⁴ bond to oxazolidin-2- one and morpholin-2-one fragments, the reactivity of cis- and trans-isomeric amino alcohols of the sulfolane series toward a number of cyclizing agents was studied. The cis isomers reacted with dimethyl acetylenedicarboxylate and triphosgene to afford the corresponding morpholin-2-ones and oxazolidin-2-ones, whereas the trans isomers gave rise to open-chain aminofumarates and urea derivatives, respectively. The reactions of both cis- and trans-amino alcohols with oxalic acid derivatives (diethyl oxalate, oxalyl chloride) led to the formation of exclusively acyclic mono- and/or diamides.     

Thermodynamic activation parameters of hindered rotation of the CF<Subscript>3</Subscript> group in the 4-nitrophenyltrifluoromethylsulfone radical anion in DMF

The thermodynamic activation parameters of hindered rotation of the CF₃ group in the 4-nitrophenyltrifluoromethylsulfone radical anion in DMF were determined from the temperature dependence of the EPR line widths and spin density distributions calculated by the U-B3LYP method in the 6-31+G* basis set. In the range 293 > T > 199 K, the activation energy of hindered rotation E _F depends on the temperature and changes in the range 9.67 < E _F < 18.95 kJ·mol^?1; the changes in the activation enthalpy and entropy are 7.23 < ΔH ^≠ < 17.30 kJ·mol^?1 and ?53.45 < ΔS ^≠ < ?11.37 J·(mol·K)^?1, respectively. Based on the suggested method for evaluating the inner product of the g tensor and the tensor of anisotropic hfi with the ¹⁴N nucleus for nitrobenzene radical anions in the liquid state we calculated the correlation time and determined the activation energy of rotational diffusion of the 4-nitrophenyltrifluoromethylsulfone radical anion in DMF, E _r = 20.175±0.54 kJ·mol^?1.     

An analysis of the vibrational structure of the UV absorption spectrum of methacryloyl chloride vapor

An analysis of the vibrational structure of the UV spectrum of methacryloyl chloride vapor was performed. The spectrum contained unique information about the torsional vibration levels of the trans and cis isomers in the ground (S ₀) and excited (S ₁) electronic states. 136 absorption bands were revealed, and ～85% of them were assigned. The 0-0 transition frequencies of the trans and cis isomers were found. Several Deslandres tables were constructed for torsional vibrations from 0-0 transition frequencies and “local origins” corresponding to fundamental and combined frequencies of both isomers. Systems of torsional levels up to high quantum number values (v ≈ 6–8) were determined, and the ω_e harmonic frequencies and χ ₁₁ anharmonicity coefficients were calculated for both isometric forms in the ground (S ₀) and excited (S ₁) states. The results were substantially different from those obtained in an analysis of Fourier-transform IR spectra.     

Modeling the structure,absorption spectra,and cis-trans isomerization of thiacarbocyanine dyes

The relative stability of the trans-and cis-isomers of 3,3′-diethylthiacarbocyanine (Dye1) and 3,3′-diethyl-9-methylthiacarbocyanine (Dye2)¹, as well as sections of the potential energy surfaces along the internal coordinate of the isomerization reaction, were studied using the density functional theory. Calculation of the minimum energy pathway for the isomerization reaction showed that the barrier for rotation about the C₈–C₉ bond is higher for Dye1 than for Dye2. Local minimums were found for the singlet excited state of the 8,9-cis-and trans-isomers of the dyes. In the case of the trans-isomers, substantial changes in the dye structure do not occur and the local minimum of the excited state corresponds to the geometry of the starting trans-isomers, which favors efficient fluorescence. A search for the nearest local minimum of the singlet excited state of the 8,9-cis-isomers leads to structures, which differ significantly from the starting structures, and the intensity of the S₁ → S₀ transition in those structures appears to be practically zero. The results are in agreement with experimental data on the absorption, fluorescence, and fluorescence excitation spectra of the dyes.     

Internal rotation potential functions of the acryloyl chloride molecule in the ground (<Emphasis Type="Italic">S</Emphasis><Subscript>0</Subscript>) and excited (<Emphasis Type="Italic">S</Emphasis><Subscript>1</Subscript>) electronic states

The internal rotation potential function of the acryloyl chloride molecule in the S ₀ and S ₁ electronic states was reproduced using systems of torsional vibration levels obtained for its trans and cis isomers by analyzing the vibrational structure of the UV spectrum of the molecule. The kinematic factor F in the S ₀ ground state was calculated including geometric parameter relaxation as a function of internal rotation angle. The torsional potential parameters in the S ₀ state obtained in this work were substantially different from those determined from the infrared Fourier-transform spectrum ignoring the resonance perturbation of the level with v = 3. The form of the internal rotation potential function and the higher stability of the trans isomer (the main isomer) were substantiated by high-level quantum-mechanical calculations.     

Potential function of the internal rotation of a methacrolein molecule in the ground (<Emphasis Type="Italic">S</Emphasis> <Subscript>0</Subscript>) electronic state

The structural parameters of s-trans- and s-cis-isomers of a methacrolein molecule in the ground (S₀) electronic state are determined by means of MP2 method with the cc-pVTZ basis set. Kinematic factor F(φ) is expanded in a Fourier series. The potential function of internal rotation (PFIR) of methacrolein in this state is built using experimental frequencies of transitions of the torsional vibration of both isomers, obtained from an analysis of the vibrational structure of the high-resolution UV spectrum with allowance for the geometry and difference between the energy (ΔH) of the isomers. It is shown that the V_n parameters of the potential function of internal rotation of the molecule, built using the frequencies of the transition of the torsional vibrations of s-trans- and s-cis-isomers of the methacrolein molecule, determined from vibrational structure of the high-resolution UV spectrum and the FTIR spectrum, are close.     

Synthesis and structure of 1-(buta-1,3-dien-2-yl)pyrazoles and their behavior in Diels-Alder reactions

A convenient procedure has been developed for the synthesis of cis-and trans-isomeric 1-(buta-1,3-dien-1-yl)-1H-pyrazoles by reaction of the corresponding pyrazoles with β-methylacrolein diethyl acetal and subsequent 1,4-cleavage of the nucleophilic substitution products. The behavior of the title compounds in Diels-Alder reactions with maleic anhydride has been studied. According to the ¹H NMR data, 1-(buta-1,3-dien-1-yl)-1H-pyrazole is a mixture of cis and trans isomers. Butadienylpyrazoles having methyl groups in the pyrazole ring do not react with maleic anhydride.     

The internal rotation potential functions of the methacryloyl chloride molecule in the ground and excited electronic states

The systems of torsional vibration levels of the trans and cis methacryloyl chloride isomers in the ground (S ₀) and excited (S ₁) electronic states obtained by analyzing the vibrational structure of the gas-phase UV spectrum were used to reproduce the internal rotation potential functions of the molecule in both electronic states. The kinematic F factor in the S ₀ and S ₁ electronic states was calculated taking into account the relaxation of geometric parameters depending on the internal rotation angle. The internal rotation potential function parameters in the S ₀ state are substantially different from the parameters obtained using the torsional levels of the IR Fourier transform spectrum; at the same time, they are substantiated by quantum-mechanical calculations.     

Structural features of monomeric octahedral <Emphasis Type="Italic">d</Emphasis><Superscript>2</Superscript>-rhenium(V) monooxo complexes with oxygen atoms of bidentate-chelating neutral and acidic ligands (O,P)

The structural features of 38 mononuclear d ²-Re(V) octahedral monooxo complexes (I–XXXVIII) with oxygen atoms of bidentate-chelating (O, P) ligands (L ⁿ ) are considered. The atoms O(L ⁿ ) are mostly in trans positions to O(oxo) ligands. In three compounds of general formula [ReO(L_mono)(L ⁿ )₂] (XXXVI–XXXVIII), the O atoms of two L ⁿ ligands occupy both trans and cis positions to oxo ligands. In one complex, namely, in [ReO(L ⁿ )(L _tri ¹¹ )], n = 3 (XXXV), the atom O(L³) is in the cis position to the oxo ligand; the trans position to O(oxo) is occupied by the atom O(L _tri ¹¹ ).     

Calculations of the intrinsic constants of the complexation between Cu(II) and halide ions in solution

Experimental curves of spectrophotometric titration for systems containing mononuclear homoleptic complexes were interpreted in an alternative way involving calculation of the intrinsic constants of binding of the ligand by a central ion with fixed coordination sites. This matrix approach allows one to reduce the number of variables in least-squares optimization of titration curves, describing the formation of complexes [MX _n ] (n = 1–4) via three independent variables (\(\bar K\), ω _cis and ω _trans ) for a square planar geometry and via two variables (\(\bar K\) and ω) for a tetrahedral geometry. Differences in the mutual cis-and trans-influences of coordinated ligands were quantitatively estimated for labile complexes in solution. The method proposed was used to calculate the intrinsic constants of complexation between Cu²⁺ and the chloride ion in methanol from spectrophotometric titration data.     

Trans-cis photoisomerization and photoinduced electron transfer as competitive reactions of 9-etylthiacarbocyanine in binary mixtures

The effect of the composition of the dioxane-water mixture on the ability of 9-ethylthiacarbocyanine to participate in competitive reactions of trans-cis photoisomerization and photoinduced electron transfer was studied. An increase in the dioxane content in the range 0–50 vol % leads to a shift of the equilibrium between the dye dimers and monomers toward the monomers (cis-monomers), which is accompanied by a drop in the yield of the triplet dimer molecules, which appear under the action of a laser flash, and electron-transfer products that are formed via the triplet state of dimers in the presence of methylviologen. With growing the dioxane content in the range 50–80 vol %, a shift of the equilibrium between the cis-and trans-monomers toward the trans-monomers occurs, which is accompanied by an increase in the fluorescence intensity. At the dioxane content above 80 vol %, a further shift of the equilibrium toward the trans-monomers occurs, which is accompanied by a substantial increase in the fluorescence intensity and an appearance under the action of a laser flash of the band of the triplet-triplet absorption of the trans-monomer and the absorption band of the cis-monomer as a result of trans-cis photoisomerization. The trans-monomers in the triplet state participate in the electron-transfer reaction with methylviologen. The intersystem crossing process competes with fluorescence and the trans-cis isomerization reaction, which occurs via the excited singlet state of the trans-monomers.     

Dithiophosphorylation of nerol and geraniol trimethylsilyl derivatives

Reaction of tetraphosphorus decasulfide with О-(cis- and trans-3,7-dimethylocta-2,6-dien-1-yl)-trimethylsilanes affords О,О-bis(cis- and trans-3,7-dimethylocta-2,6-dien-1-yl) S-(trimethylsilyl)dithiophosphates.     

Ro-vibrating energy states of a diatomic molecule in an empirical potential

An approximate analytical solution of the Schrödinger equation is obtained to represent the rotational–vibrational (ro-vibrating) motion of a diatomic molecule. The ro-vibrating energy states arise from a systematical solution of the Schrödinger equation for an empirical potential (EP) V _±(r) = D _e {1 ? (?/δ)[coth (ηr)]^±1/1 ? (?/δ)}² are determined by means of a mathematical method so-called the Nikiforov–Uvarov (NU). The effect of the potential parameters on the ro-vibrating energy states is discussed in several values of the vibrational and rotational quantum numbers. Moreover, the validity of the method is tested with previous models called the semiclassical (SC) procedure and the quantum mechanical (QM) method. The obtained results are applied to the molecules H₂ and Ar₂.     

Synthesis and Isomer Composition of 2-Polyfluoroalkoxy-1,3,2-dioxaphospholanes and -phosphinanes

Polyfluoroalkanols readily reacted with 2-chloro-1,3,2-dioxaphospholanes and 2-chloro-1,3,2-dioxaphosphinanes in hexane in the presence of triethylamine (–10 to 25°C, 5 h) to give 2-polyfluoroalkoxy-1,3,2- dioxaphospholanes and 2-polyfluoroalkoxy-1,3,2-dioxaphosphinanes in 48–72% yield. The products were found to exist as mixtures of cis and trans isomers with the trans isomer predominating for the phospholanes and cis isomer predominating for the phosphinanes according to the ¹H, ¹³C, ¹⁹F, and ³¹P NMR data.     

Analysis of the Vibrational Structure of the <Emphasis Type="Italic">n</Emphasis>–π* Transition in the High-Resolution UV Absorption Spectrum of Methacryloyl Fluoride in the Gas Phase

The UV absorption spectrum of methacryloyl fluoride molecule in the gas phase is obtained in the wavenumber range of 32300–35900 cm^?1. The resolved vibrational structure of this spectrum consists of 153 absorption bands. The assignment of all bands has been made for the first time. Values ν_00trans = 35670.0 сm^?1 and ν_00cis = 35371.1 cm^?1 are determined. The fundamental frequencies for isomers in the S₀ and S₁ states are found. Several Deslandres Tables (DTs) are constructed for the torsional vibration of the s-trans- and s-cis-isomers of the investigated molecule using the NONIUS program. The origins in these DTs correspond to bands attributed to ν₀₀, and to the fundamental frequencies of each isomer in states S₀ and S₁. These DTs are used to determine harmonic frequencies ω_e, anharmonicity coefficients х₁₁, and the frequencies of torsional vibration 0–v transitions up to high values of vibrational quantum number v for s-trans- and s-cis-isomers in both electronic states. The frequencies of torsional vibrations for the s-trans-isomer and the s-cis-isomer in the S₀ state are ν″₁ = 80.9 сm^?1 and ν″₁ = 59.8 сm^?1, respectively. The frequencies for the s-trans- isomer and the s-cis-isomer in the S₁ state are ν′₁ = 134.1 сm^?1 and ν′₁ = 103.6 cm^?1, respectively.     

Determination of astaxanthin and astaxanthin esters in the microalgae <Emphasis Type="Italic">Haematococcus pluvialis</Emphasis> by LC-(APCI)MS and characterization of predominant carotenoid isomers by NMR spectroscopy

The oily product ZANTHIN® consists of natural astaxanthin, which is manufactured from the microalgae Haematococcus pluvialis by supercritical CO₂ extraction. An HPLC method was developed to separate all of the components of the complex astaxanthin extract using a C₃₀ column. The separation resulted in different isomers of astaxanthin accompanied by two other carotenoids. The main component consisted of astaxanthin singly esterified with several different fatty acids. C18:3, C18:2, C18:1 and C16:0 were identified as the most commonly occurring fatty acids. Doubly esterified astaxanthin was also found, although in lower concentrations compared to singly esterified astaxanthin. After performing a detailed fatty acid analysis by GC-MS, the peaks from the extract were assigned via HPLC-MS. A trans to cis transmutation of the all-trans compound was performed by thermal treatment in order to obtain an enrichment of cis isomers as the basis for unambiguous identification via NMR experiments. The all-trans as well as the 9- and 13-cis isomers of astaxanthin were characterized in detail by UV/Vis, ¹H, and ¹H,¹H COSY NMR spectroscopy.     

Binding interaction and conformational changes of human serum albumin with ranitidine studied by spectroscopic and time-resolved fluorescence methods

This study was designed to examine the interaction of histamine H₂-receptor antagonist drug ranitidine (RTN) with human serum albumin by multi-spectroscopic methods. The experimental results showed the involvement of dynamic quenching mechanism which was further confirmed by lifetime spectral studies. The binding constants (K _a) at three temperatures (288, 298, and 308 K) were 2.058 ± 0.020, 4.160 ± 0.010 and 6.801 ± 0.011 × 10⁴ dm³ mol^?1, respectively, and the number of binding sites (m) were 1.169, respectively; thermodynamic parameters ΔH ⁰ (44.152 ± 0.047 kJ mol^?1), ΔG ⁰ (?26.214 ± 0.040 kJ mol^?1), and ΔS ⁰ (236.130 ± 0.025 J K^?1 mol^?1) were calculated. The distance r between donor and acceptor was obtained (r = 3.40 nm) according to the Förster theory of non-radiative energy transfer. Synchronous fluorescence, CD, AFM and 3D fluorescence spectral results revealed the changes in secondary structure of the protein upon interaction with RTN. A molecular modeling study further confirmed the binding mode obtained by the experimental studies.