A DFT study of model complexes of zinc hydrolases and their inhibition by hydroxamic acids

DFT calculations carried out on zinc acetate and zinc hydroxamates using the Hartree-Fock and B3LYP methods with the 6-311+G basis set give a series of stable pseudotetrahedral chelates (ZnL(2)) (L = OAc, FA, AA, NMeAA, GA, SA). Addition of a water molecule to these chelates gives the hydrates, ZnL(2).H(2)O, which in all cases are energetically more stable than the corresponding chelate. Hydrates formed from O,O coordinated hydroxamate species with a five-membered chelate ring contain water molecules occupying vacant coordination sites of the zinc atom. In contrast, those formed from zinc chelates with four-membered chelate rings contain a water molecule inserted into the chelate ring to give a six-membered ring in which one hydrogen of the water molecule is H-bonded to an oxygen atom of the zinc chelate with the water oxygen strongly bonded to the zinc. A slight lengthening of the H-bonded O-H bond suggests incipient hydroxide activation of water by zinc. In contrast, the O,O bonded hydroxamates do not incorporate water into the chelate ring nor activate the water in accordance with the ability of hydroxamic acids to inhibit zinc containing metalloenzymes.     

Photochemistry of hydroxamic acids

Photochemical reactions of hydroxamic acids have been studied. The intermediacy of a RCONH radical is postulated, based on oxidations achieved with DCA under photochemical conditions.     

The HNO donor ability of hydroxamic acids upon oxidation with cyanoferrates(III)

The hydroxamic acids (RC(O)NHOH, HA) exhibit diverse biological activity, including hypotensive properties associated with formation of nitroxyl (HNO) or nitric oxide (NO). Oxidation of two HAs, benzohydroxamic and acetohydroxamic acids (BHA, AHA) by [Fe(CN)₅NH₃]^2? or [Fe(CN)₆]^3? was analyzed by spectroscopic, mass spectrometric techniques, and flow EPR measurements. Mixing BHA with both Fe(III) reactants at pH 11 allowed detecting the hydroxamate radical, (C₆H₅)C(O)NO˙^?, as a one-electron oxidation product, as well as N₂O as a final product. Successive UV–vis spectra of mixtures containing [Fe(CN)₅NH₃]^2? (though not [Fe(CN)₆]^3?) at pH 11 and 7 revealed an intermediate acylnitroso-complex, [Fe(CN)₅NOC(O)(C₆H₅)]^3? (λ_max, 465 nm, very stable at pH 7), formed through ligand interchange in the initially formed reduction product, [Fe(CN)₅NH₃]^3?, and characterized by FTIR spectra through the stretching vibrations ν_(CN), ν_(CO), and ν_(NO). Free acylnitroso derivatives, formed by alternative reaction paths of the hydroxamate radicals, hydrolyze forming RC(O)OH and HNO, postulated as precursor of N₂O. Minor quantities of NO are formed only with an excess of oxidant. The intermediacy of HNO was confirmed through its identification as [Fe(CN)₅(HNO)]^3? (λ_max, 445 nm) as a result of hydrolysis of [Fe(CN)₅(NOC(O)(C₆H₅)]^3? at pH 11. The results demonstrate that hydroxamic acids behave predominantly as HNO donors.     

Non-aqueous titration of hydroxamic acids

Benzohydroxamic acid is titrated with 0.1M tetrabutyl-anunonium hydroxide in nine non-aqueous solvents with three different indicating electrodes. The best results are obtained using dimethylformamide as solvent and platinum-platinum electrodes. Four monoprotic and three diprotic hydroxamie acids and iron(III) benzohydroxamate have been successfully titrated with this system. The effect of quantitative additions of carbon dioxide to the titrant on its apparent molarity are found to be dependent on the amount added, the strength and sample size of acid titrated and the solvent used.     

First O-glycosylation of hydroxamic acids

The first O-glycosylation of hydroxamic acids is reported. This process involves the use of glycosyl N-phenyl trifluoroacetimidates as glycosyl donors in the presence TMSOTf and 4 A molecular sieves in dichloromethane. Under such conditions, a wide range of new glycosyl donors including glucosyl, galactosyl, mannosyl, glucuronyl, and ribosyl hydroxamates were prepared in good to high yields. This procedure appears to be an advantageous alternative for the synthesis of glycosyl hydroxamates of biological interest.     

Mass spectroscopy of hydroxamic acids: Fragmentation by the loss of the hydroxylamino oxygen

The mass spectra of three dihydroxamic acids have shown in each case prominent [M – 16]^+· and [M – 32]^+· ions. The spectrum of biosynthetically labeled rhodotorulic acid indicates that these ions arise from the sequential, specific loss of the hydroxylamino oxygens.     

Synthesis of the intermediate for fumimycin: a natural peptide deformylase inhibitor

Synthetic efforts toward the potential bacterial peptide deformylase inhibitor fumimycin are reported. The synthetic approach features a tandem Friedel–Crafts alkylation/lactonization access as key reaction to the α, α-disubstituted amino acid unit, and results in the synthesis of an advanced racemic intermediate with an Z configuration propenyl group starting from vanillin with 18 % total yield in five steps.     

Cyclic hydroxamic acids of the indole series

A convenient method was developed for obtaining 2-N-hydroxy-3-keto-1-phenyl-1,3-dihydropyrrolo[3,4-b]indoles by reaction of indole-2-hydroxamic acid with substituted benzaldehydes. Complex compounds of trivalent iron salts with cyclic hydroxamic acids were isolated.Khimiya Geterotsiklicheskikh Soedinenii, No. 2, pp. 227–229, February, 1985.     

Inhibition of urease activity by dipeptidyl hydroxamic acids.

A series of dipeptidyl hydroxamic acids (H-X-Gly-NHOH: X = amino acid residues) was synthesized, and the inhibitory activity against Jack bean and Proteus mirabilis ureases [EC 3.5.1.5] was examined. A number of H-X-Gly-NHOH inhibited Jack bean urease with an I50 of the order of 10(-6) M and inhibited Proteus mirabilis urease with an I50 of the order of 10(-5) M. The inhibition against Jack bean urease was more potent than that with the corresponding aminoacyl hydroxamic acids (H-X-NHOH).     

Fumimycin: a peptide deformylase inhibitor with an unusual skeleton produced by Aspergillus fumisynnematus

Fumimycin, an unusual metabolite incorporating an unusual alanine unit linked to a phenyl group at the alpha-carbon with both lactone and amide moieties, was isolated from cultures of Aspergillus fumisynnematus. Its structure was established by spectral analysis. Fumimycin was found to inhibit Staphylococcus aureus peptide deformylase with an IC50 value of 4.1 microM and also showed antibacterial activity against S. aureus.     

Acidity of hydroxamic acids and amides

The relatively strong acidity of hydroxamic acids was analyzed by means of isodesmic reactions in which this acid or its anion is formed from simpler precursors. Acidity of amides was analyzed in the same way. Energies of all compounds involved in the reactions were calculated at the B3LYP/AUG-cc-pVTZ//B3LYP/6-311 + G(d,p) level; at this level a good agreement was reached with the sparse experimental data. Interpretation of the results was the same as in the recent discussion of the acidity of carboxylic acids, and the conclusions were similar: both amides and hydroxamic acids are stabilized with respect to simpler reference molecules of amines or N-alkylhydroxylamines, respectively. However, their anions are stabilized still more and are responsible for the acidity. This effect is stronger in hydroxamic acids or amides than in carboxylic acids. The problem of whether it is due to resonance depends on the definition of this term. Semiquantitative comparison suggests that resonance in hydroxamic acids is more important than in amides and still more than in carboxylic acids. The stronger acidity of hydroxamic acids compared to amides is due to the destabilizing inductive effect of the hydroxyl group in the acid molecule, not to any effect in the anion.     

Conformational behavior of some hydroxamic acids

The conformational preferences of a few hydroxamic acids are investigated by the density functional B3LYP/6-311++G**//B3LYP16-31G* and semiempirical AM1 and PM3 methods in this work. It is found that both semiempirical methods give satisfactory results in comparison with sophisticated DFT and ab initio calculations, except for the activation barriers, which are overestimated. Of the two semiempirical methods, while the PM3 method gives better results for relative stabilities, AM1 geometries are in slightly better agreement with the experiments. The keto forms are found to be most stable and the reaction pathways for the interconversion between the keto and enol forms have been deduced. The effect of solvation on the reaction has also been investigated, as has the effect of methyl substitution at the carbon and nitrogen atoms. All the investigated acids exhibit N-acid behavior.     

Colorimetric determination of organic compounds by formation of hydroxamic acids

Carboxylic acids, their chlorides, anhydrides, esters, lactones, amides, lactams and imides react with hydroxylamine to give hydroxamic acids which are then treated with iron(III). Other compounds or groups of compounds can also be determined after a prior conversion into hydroxylamine-reactive derivatives. The calorimetric applications of these reactions are reviewed. The effect of various factors is discussed. A selective procedure for determination of acid chlorides and anhydrides and an improved procedure for determination of carboxylic esters and lactones are presented.     

N-amidation by copper-mediated cross-coupling of organostannanes or boronic acids with o-acetyl hydroxamic acids

A general nonoxidative N-amidation of organostannanes and boronic acids has been developed. Under nonbasic conditions a wide variety of aryl, alkenyl, and heteroaryl organostannanes and boronic acids couple efficiently with O-acetyl hydroxamic acids in the presence of Cu(I) sources.