The formation mechanism of Mo-methylidene species over Mo/HBeta catalysts for heterogeneous olefin metathesis: A density functional theory study

Density Functional Theory (DFT) calculations were performed to optimize the Mo active sites in HBeta zeolite catalysts as well as to locate the reaction pathways to form the Mo-methylidene species. Two different Mo active sites, i.e., the oxidized Mo^VIO₂ and its reduced form Mo^VO(OH), were developed and incorporated into HBeta zeolites by replacing a pair of Brønsted acidic sites. The Mo-methylidene species were found to be produced through two elementary reaction steps, and the Mo-oxametallacyclobutanes were identified as the intermediates. The activation barriers of the decompositions of the oxametallacyclobutane intermediates (Step 2) were estimated to be higher than those of the ethene addition on the Mo active sites (Step 1). The oxidation states of the Mo centers exerted marked influences on the stabilities of the intermediates as well as on the activation barriers and reaction heats of Steps 1 and 2, which were elucidated by the electronic properties of the O_b-ligands directly bonded to the Mo centers. Both free energy barriers and reaction heats have indicated that the whole processes of generating the Mo-methylidene species were preferred over the Mo(VI) rather than Mo(V) active site. Accordingly, the Mo(VI) active site was more efficient in catalyzing the formation of Mo-methylidene species in the heterogeneous Mo/HBeta catalytic systems.     

VO3/CeO2(111)催化剂上丙烷氧化脱氢反应活性和选择性的密度泛函理论研究

低碳烯烃一直以来都是化工行业非常重要的基础原料,一般采用烷烃直接热裂解制得,但该方法耗能很大,经济价值有限.近年来,人们开始尝试利用氧化脱氢反应(ODH)方法制备低碳烯烃,并取得了巨大的研究进展,其中稀土氧化物负载钒氧化物催化剂具有良好的低碳烷烃氧化脱氢性能.本文分析了前人对于钒氧化物负载在CeO2表面的计算研究结果,并选取了最具代表性的VO3/CeO2(111)作为烷烃ODH制烯烃的模型催化剂,详细研究了丙烷在该催化剂体系中发生ODH反应机理.通过使用密度泛函理论,对丙烷在VO3/CeO2(111)催化剂上断裂第一根和第二根碳氢键的反应过程进行了理论模拟,并对比了丙烷制丙烯中碳氢键断裂先后的活化能及VO3/CeO2(111)催化剂材料自身的电子性质.结果表明,该催化剂的电子结构在丙烷氧化脱氢反应中扮演关键角色.在丙烷分子断裂第一根碳氢键的反应过程中,会产生两个自由电子,对其电子结构分析发现,其中的一个自由电子会局域在由VO3/CeO2(111)催化剂中五个相关氧原子的2p轨道所形成的新发生局域空轨道(NELS)上,这个独特的新发生局域空轨道只能接受一个电子,另一个电子则会通过丙基在CeO2表面发生吸附将电子传递到CeO2表面的Ce原子上;当丙烷分子进一步发生第二根碳氢键断裂反应时,同样会产生两个新的局域电子,其中一个电子局域在Ce的4f轨道上,此时CeO2表面存在两个局域电子,相互排斥,导致该催化剂上丙烷断裂第二根碳氢键所需的活化能远高于第一根碳氢键.综上,本文对VO3/CeO2(111)催化剂上低碳烷烃ODH反应独特的催化活性和选择性给出了较为细致的分析和解释.     

Screening performance of methane activation over atomically dispersed metal catalysts on defective boron nitride monolayers:A density functional theory study

Methane(CH_4) controllable activation is the key process for CH_4 upgrading,which is sensitive to the surface oxygen species.The high thermal conductivity and superb thermal stability of the hexagonal boron nitride(h-BN) sheet makes a single transition metal atom doped hexagonal boron nitride monolayer(TM-BN) possible to be a promising material for catalyzing methane partial oxidation.The performances of 24 TM-BNs for CH_4 activation are systematically investigated during the CH_4 oxidation by means of first-principles computation.The calculation results unravel the periodic va riation trends for the stability of TM-BN,the adsorption strength and the kind of O_2 species,and the resulting CH_4 activation performance on TM-BNs.The formed peroxide O_2~(2-)of which the O-O bond could be broken and O-anions are found to be reactive oxygen species for CH_4 activation under the mild conditions.It is found that the redox potential of TM center,including its valence electron number,coordination environment,and the work function of TM-BN,is the underlying reason for the formation of different oxygen species and the resulting activity for CH_4 oxidative dehydrogenation.     

Analysis of vibrational spectra of 2 and 3-methylpiperidine based on density functional theory calculations

The experimental and theoretical vibrational spectra of 2 and 3-methylpiperidine (abbreviated as 2-MP and 3-MP) were studied. The FT-Infrared spectra of 2-MP and 3-MP molecules were recorded in the liquid phase. The structural and spectroscopic analysis of the title molecules were made by using density functional harmonic calculations. For the title molecules, only one form was found most stable structure by using B3LYP level with the 6-311G (d,p) basis set. Selected experimental bands were assigned and characterized based on the scaled theoretical wave numbers by their total energy distribution (TED).     

Mechanism(s) of thermal decomposition of N-Nitrosoamides: A density functional theory study

The thermal decomposition of N-nitrosoamides has experimentally been demonstrated to depend on several factors, such as temperature, solvent and the substituents on the substrate. Consequently, a number of reaction mechanisms have been proposed for this process in the literature. In this work, we present a comprehensive computational investigation in which we examine the detailed reaction mechanisms for two N-nitrosoamides (with aliphatic and aromatic substituents) in two different solvents (mesitylene and methanol). It is shown that the reaction mechanism can change dramatically with the nature of the substrate and the choice of solvent. Importantly, it is found that the polar solvent stabilizes ion-pairs that are unstable in the non-polar solvent, which can play a key role in the mechanism.     

HZSM-5催化甲苯和甲醇烷基化反应机理的密度泛函理论研究

对二甲苯(PX)是重要的有机化工原料,主要用于生产对苯二甲酸(PTA)和对苯二甲酸二甲酯(DMT), PTA和 DMT可经缩聚生产化纤、合成树脂和塑料等聚酯产品. PX主要通过甲苯歧化、二甲苯异构化或甲苯与 C9芳烃烷基转移等方式生产.由于三种二甲苯和乙苯的沸点接近,需要经过吸附分离或深冷分离才能得到高纯度的 PX,传统工艺物料循环量大,设备庞大,操作费用高.而通过甲苯和甲醇烷基化反应直接高选择性生成 PX,可大大降低成本,具有非常高的经济效益和研究价值.自1970年代以来,国内外众多科研院所对甲苯和甲醇烷基化催化剂进行了广泛研究,但催化剂选择性和稳定性仍需进一步提高.为了加深对甲苯和甲醇烷基化反应的认识,指导催化剂开发,有必要对甲苯和甲醇烷基化生成二甲苯的反应机理进行深入研究.当前甲苯和甲醇烷基化机理研究主要存在以下问题：(1)计算得到的能量多为电子能,而非自由能;(2)所采用的模型多为团簇模型,使用 ONIOM方法,对长程作用力描述不充分;(3)认为甲苯只有一种吸附状态;(4)没有考虑偕烷基化反应.本文采用周期性模型,通过密度泛函理论研究了 HZSM-5分子筛上甲苯和甲醇烷基化反应机理,通过计算熵得到了反应自由能,并考虑了偕烷基化反应.由于甲基的存在,在甲苯的吸附态中,甲基会伸向孔道的不同方向,因此我们认为甲苯有多种吸附态,而不同的吸附态会生成不同的二甲苯.结果表明,甲苯可以在对位、间位、邻位和偕位上通过协同机理或分步机理发生烷基化反应.在协同机理中,甲苯在对位、间位、邻位和偕位发生烷基化反应的自由能垒分别为167,138,139和183 kJ/mol.在分步机理中,甲醇脱水生成甲氧基的自由能垒为145 kJ/mol,是决速步骤;而甲苯和甲氧基对位、间位、邻位和偕位烷基化的自由能垒分别为127,105,106和114 kJ/mol.两种机理中 PX的生成能垒均比 MX和 OX高,与文献报道的结果不同.文献均认为, PX的生成能垒最低.一方面这可能是由于所采用模型的不同,本文采用周期性模型,能更充分考虑长程作用力的影响;另一方面可能是由于对甲苯吸附态的不同处理,我们认为甲苯有多种吸附态,不同的吸附态会生成不同的二甲苯,而文献均只考虑了一种甲苯吸附态.但是,在实验中, PX选择性最高.这可能是由于：(1) PX在 HZSM-5孔道的扩散速率比 MX和 OX高2–3个数量级;(2)甲苯和甲醇烷基化生成的 MX和OX迅速发生异构化反应生成 PX,异构化反应速率高于甲苯烷基化速率.两种机理中, C8H11+都是重要的中间物种,它可以反馈一个质子给分子筛骨架,生成二甲苯;也可以脱烷基生成甲烷和乙烯等气相产物.研究发现,甲烷的生成是由于 C8H11+物种中的一个 H质子从苯环上的碳原子转移到甲基上的碳原子造成的,计算得到的对位、间位和邻位 C8H11+生成甲烷的能垒分别为136,132和134 kJ/mol.由于十元环孔道的限制, HZSM-5孔道中很难通过甲苯歧化反应生成苯;偕烷基化生成的碳正离子有可能脱烷基生成乙烯和乙烷等产物,进而生成苯.碳正离子脱烷基反应生成了大量气相产物,造成反应液收降低.碳正离子脱烷基反应与甲醇制烯烃过程的烃池机理相一致,因此甲苯和甲醇烷基化反应也遵循烃池机理.     

Theoretical Investigation on Photoionization and Dissociative Photoionization of Toluene

The photoionization and dissociation photoionization of toluene have been studied using quantum chemistry methods.The geometries and frequencies of the reactants,transition states and products have been performed at B3LYP/6-311++G (d,p) level,and single-point energy calculations for all the stationary points were carried out at DFT calculations of the optimized structures with the G3B3 level.The ionization energies of toluene and the appearance energies for major fragment ions,C₇H₇⁺,C₆H₅⁺,C₅H₆⁺,C₅H₅⁺,are determined to be 8.90,11.15 or 11.03,12.72,13.69,16.28 eV,respectively,which are all in good agreement with published experimental data.With the help of available published experimental data and theoretical results,four dissociative photoionization channels have been proposed:C₇H₇⁺+H,C₆H₅⁺+CH₃,C₅H₆⁺+C₂H₂,C₅H₅⁺+C₂H₂+H.Transition structures and intermediates for those isomerization processes are determined in this work.Especially,the structures of C₅H₆⁺ and C₅H₅⁺ produced by dissociative photoionization of toluene have been defined as chain structure in this work with theoretical calculations.     

On the NH3+HCO3H→HCOOH+H3NO mechanism: a density functional theory study

The B1LYP, B3LYP and MPW1PW91 density functional theory methods combined with the 6-311G(2d, 2p) basis set were used to carry out a density functional theory study of the NH₃+HCO₃H→HCOOH+H₃NO reaction. The purpose of this work is to study the reaction mechanism from the viewpoint of bond order transformations throughout the course of the reaction, and propose the reasons for the apparent differences in activation barriers.     

Au_n团簇催化水煤气变换反应机理的密度泛函理论研究

利用密度泛函理论(DFT)研究了Au10、Au13和Au20三类团簇的稳定性和对水煤气变换(WGSR)反应的催化活性,考察了各物质在Aun团簇上的吸附行为和微观反应机理。结果表明,三类Aun团簇的稳定性顺序为Au10Au13Au20,而Aun团簇中电子离域性及吸附能力大小趋势为Au13Au10Au20。在三类Aun团簇上,水煤气变换反应的控速步骤均为H2O的解离,但其反应机理路径有所不同。Au10团簇上为羧基机理,COOH*中间体直接解离;Au13团簇上为氧化还原机理,两个OH*发生歧化反应;Au20团簇上为羧基机理,COOH*和OH*发生歧化反应。通过对三类团簇上的最佳反应路径进行比较发现,Au13团簇在低温下具有较好的催化活性。     

Oxygenolysis reaction mechanism of copper-dependent quercetin 2,3-dioxygenase: A density functional theory study

The mechanism of the action of copper-dependent quercetin 2,3-dioxygenase(2,3QD) has been investigated by means of hybrid density functional theory.The 2,3QD enzyme cleaves the O-heterocycle of a quercetin by incorporation of both oxygen atoms into the substrate and releases carbon monoxide.The calculations show that dioxygen attack on the copper complex is energetically favorable.The adduct has a possible near-degeneracy of states between [Cu 2+-(substrate-H +)] and [Cu +-(substrate-H).],and in addition the pyramidalized C 2 atom is ideally suited for forming a dioxygen-bridged structure.In the next step,the C 3-C 4 bond is cleaved and intermediate Int 5 is formed via transition state TS 4.Finally,the O a-O b and C 2-C 3 bonds are cleaved,and CO is released in one concerted transition state(TS 5) with the barrier of 63.25 and 61.91 kJ/mol in the gas phase and protein environments,respectively.On the basis of our proposed reaction mechanism,this is the rate-limiting step of the whole catalytic cycle and is strongly driven by a relatively large exothermicity of 100.86 kJ/mol.Our work provides some valuable fundamental insights into the behavior of this enzyme.     

Density functional theory study of the mechanism for Ni(NHC)2 catalyzed dehydrogenation of ammonia-borane for chemical hydrogen storage

The mechanism for catalytic dehydrogenation of ammonia-borane (AB = H₃N-BH₃), a promising candidate for chemical hydrogen storage, by the Ni(NHC)₂ complexes was studied by using density functional theory at the non-empirical meta-GGA level, Tao-Perdew-Staroverov-Scuseria (TPSS) functional, with all-electron correlation-consistent polarized valence double-zeta (cc-pVDZ) basis set. The mechanism for both the first and the second H₂ release from AB was studied for the first time. Several unusual aspects of this catalytic mechanism were revealed through our calculations. First, the first H₂ release begins with proton transfer from nitrogen to the Ni bound carbene carbon, forming a new C-H bond, instead of the previously hypothesized direct B-H or N-H bond activation. Second, this new C-H bond is activated by the metal, transferring the H to Ni, then forming the H₂ molecule by transferring another H from B to Ni, rather than β-H transfer. Third, the second H₂ release from H₂N-BH₂ begins with the breaking of a 3-center, 2-electron Ni-H-B bridging structure with the assistance of the unsaturated carbene carbon atom to form a B-C bond. Fourth, a nearly rhombic N₂B₂H₆ structure is formed to help the regeneration of the catalyst Ni(NHC)₂. These reaction pathways explain the importance of NHC ligands in this catalytic process and yield lower energy barriers than those mechanisms that begin with N-H or B-H activations catalyzed by the metal atoms. The predicted reaction mechanism which features unexpected ligand participation points the way to finding new catalysts with higher efficiency, as partial unsaturation of the M-L bond may be essential for low energy H transfers.     

A density functional theory investigation on the mechanism and kinetics of dimethyl carbonate formation on Cu2O catalyst

A theoretical analysis about the mechanism and kinetics of dimethyl carbonate (DMC) formation via oxidative carbonylation of methanol on Cu₂O catalyst is explored using periodic density functional calculations, both in gas phase and in solvent. The effect of solvent is taken into account using the conductor‐like screening model. The calculated results show that CO insertion to methoxide species to produce monomethyl carbonate species is the rate‐determining step, the corresponding activation barrier is 161.9 kJ mol^?1. Then, monomethyl carbonate species reacts with additional methoxide to form DMC with an activation barrier of 98.8 kJ mol^?1, above reaction pathway mainly contributes to the formation of DMC. CO insertion to dimethoxide species to form DMC is also considered and analyzed, the corresponding activation barrier is 308.5 kJ mol^?1, suggesting that CO insertion to dimethoxide species is not competitive in dynamics in comparison with CO insertion to methoxide species. The solvent effects on CO insertion to methoxide species involving the activation barriers suggest that the rate‐determining step can be significantly affected by the solvent, 70.2 kJ mol^?1 in methanol and 63.9 kJ mol^?1 in water, which means that solvent effect can reduce the activation barrier of CO insertion to methoxide species and make the reaction of CO insertion to methoxide in solvents much easier than that in gas phase. Above calculated results can provide good theoretical guidance for the mechanism and kinetics of DMC formation and suggest that solvent effect can well improve the performance of DMC formation on Cu₂O catalyst in a liquid‐phase slurry. © 2012 Wiley Periodicals, Inc.     

左旋葡聚糖热解机理的密度泛函理论研究

采用密度泛函理论B3LYP/6-31++G(d,p)方法,对纤维素热解的主要产物左旋葡聚糖的热解反应机理进行了理论计算分析,设计了四种可能的热解反应途径, 对各种反应的反应物、产物和过渡态的结构进行了能量梯度全优化。计算结果表明,左旋葡聚糖开环成链状中间体时,首先,左旋葡聚糖中的两个半缩醛键C(1)-O(7)和C(6)-O(8)断裂,经过渡态TS₁形成中间体IM₁,同时,C(6)-O(7)结合成键使C(5)-C(6)-O(7)形成环状结构,该反应的能垒较高,为296.53 kJ/mol,然后IM₁经过渡态TS₂转变为中间体IM₂,该反应的能垒为234.09 kJ/mol;对IM₂设计了四条可能的反应路径,反应路径2和3能垒较低,是IM₂最可能的热解反应途径;在反应路径1和4中都包含了脱羰基反应,其反应能垒较高,不易发生。     

Insight into the reaction mechanism of CH2SH with HO2: A density functional theory study

Density functional theory was adopted in this work to reveal the reaction mechanism of CH₂SH with HO₂. Reaction rate constants were computed from 200 to 2000 K using the transition state theory combined with Wigner and Eckart tunneling correction. Moreover, localized orbital locator, atoms in molecules and Mayer bond order analyses were used to study the essence of chemical bonding evolution. Eleven singlet paths and three triplet ones are located on the potential surface (PES). The results show that the main products on the singlet PES are ¹CH₂S and H₂O₂, whereas on the triplet PES they are CH₃SH + ³O₂, which are coincident with the similar reaction of CH₃S and HO₂. This conclusion is also supported by rate constant calculation results. Interestingly, all the possible paths are involved in the hydrogen transfer. The results have provided underlying insights to the analogous reactions and further experimental studies.     

A density functional theory study of a concerted mechanism for proton exchange between amino acid side chains and water

 A concerted mechanism for proton exchange between water and the amino acid side chains of cysteine, serine, arginine and glutamic acid has been investigated with hybrid density functional theory. The models used include, besides the amino acid side chain, a number of water molecules ranging from one to five in some cases. The modeling of the amino acids without their backbones is shown to be an excellent approximation. Long-range polarization effects were incorporated through a dielectric cavity method allowing a better comparison to existing measurements for free amino acids in water. The barriers converge rather fast with the number of water molecules for all the present amino acids and the converged values are in reasonable agreement with experiments with discrepancies in the range 2–6 kcal/mol. The dielectric effects were found to be small for all systems except cysteine, where there is a lowering of the barrier by 3–5 kcal/mol. The transition states for these concerted pathways form rings in which the separated charges can be stabilized. Received: 25 October 1999 / Accepted: 5 April 2000 / Published online: 21 June 2000     

Hydride abstraction of methylamine with Cu(S) in the gas phase: A density functional theory study

The gas-phase hydride abstraction of methylamine with Cu⁺(¹S) is theoretically investigated by using density functional theory. Geometries for all the stationary points involved are fully optimized at both the B3LYP/6-311++G(d,p) and B3LYP/6-311++G(3df,2p) levels and the reaction is analyzed in terms of the topology of potential energy surface. Approach of Cu⁺ towards methylamine could form either “classical” N or “nonclassical” η¹-methyl-H attached complex with the former being the global minimum. Both complexes are found to be key intermediates for the hydride abstraction, which could transfer into each other via two parallel routes, i.e., concerted metal movement and stepwise C-H activation-rearrangement. A charge-transfer process is detected for the “nonclassical” complex converting to a precursor species (CuH-NH₂CH₂⁺), which accounts for the final products by a nonreactive dissociation.     

A density functional theory study on the electrocyclization of 1,2,4,6-heptatetraene analogues: converting a pericyclic to a pseudopericyclic reaction

A comprehensive B3LYP/6-31+G* study on the electrocyclization of 1,2,4,6-heptatetraene analogues was conducted. Starting from the cyclization of (2Z)-2,4,5-hexatrienal, a pericyclic disrotatory process favored by the assistance of a electron lone pair, we incorporated small modifications in its molecular structure to obtain a truly pseudopericyclic process. To this purpose electronegative atoms (fluorine and nitrogen) were added to give a more electrophilic character on the carbon atom which is attacked by the electron lone pair of the oxygen atom. The complete pathway for each reaction was determined, and changes in magnetic properties were monitored with a view to estimating the aromatization associated with each process. This information, together with the energetic and structural results, allowed us to classify the reactions as pseudopericyclic or pericyclic. Among all studied reactions only one was a truly pseudopericyclic process and another was a borderline case. The features of this unequivocally pseudopericyclic case were analyzed in depth.     

Solvent effects on isomerization equilibria: An energetic analysis in the framework of density functional theory

Summary We have analyzed equilibrium solvent effects on some isomerization reactions, chosen as the most representative of this wide class of reaction in organic and inorganic chemistry. Solvent effects were modeled by the self-consistent reaction field approach, in the framework of the density functional computational scheme, as implemented in the ADF package. We have investigated as organic reactions the formamide/formamidic acid and 2-pyridone/2-hydroxypyridine tautomerization reactions, whereas the linkage isomerization of pentaamminenitro cobalt(II) to pentaamminenitrito cobalt(II) was chosen as representative of inorganic isomeric equilibria.The three examples point out three different limiting behaviors deriving from the interplay of electrostatic and polarization contributions to the total energy.