超声诱导对家蝇幼虫基因组DNA影响的谱学研究

超声诱导3日龄家蝇幼虫后提取对照和处理组的基因组DNA,利用紫外光谱、荧光光谱、红外光谱、核磁共振谱对其结构进行分析,并利用PCR对基因组中attacin基因的3′端序列进行测序比较。结果表明,超声诱导能够影响家蝇幼虫基因组DNA的二级结构和碱基堆积状态,进而在DNA复制时造成碱基错配最终导致DNA序列发生改变,但是超声诱导对DNA的化学基团和化学键没有明显的影响。     

X射线和过氧化氢引起的Hela细胞染色质损伤的微区拉曼光谱研究

我们成功地用微区拉曼光谱探针技术获得了培养单个活体 Hela 细胞核中染色质的拉曼光谱。从光谱中我们看到正常 Hele 细胞核蛋白的二级结构为 a 螺旋,DNA 为 A 型构象。经10~(-3)moI/L 过氧化氢处理20分钟及8Gy x 射线照射后的 Hela 细胞核蛋白的二级结构出现反平行β折叠,DNA 出现 B 型构象。这种结果与我们的假设是相符合的。     

脱氧核糖核酸单链序列的预测

利用Langevin动力学方法模拟了脱氧核糖核酸(DNA)单链在电场力作用下穿越纳米孔道的动力学过程.研究表明,不同种类的单体对应着不同的居留时间,相邻单体的居留时间随着孔道长度的增大而减小.在简化模型的基础上,可以从居留时间图中一次性地推测出一条DNA链的嘌呤和嘧啶的分布.应用该方法对17条不同序列的DNA链进行了预测,平均准确率为951%.在此方法的基础上做一些改进,可以为DNA链的测序提供一种高效的低成本方法. 关键词： Langevin动力学 脱氧核糖核酸单链 序列预测     

高压对溶液中聚左旋乳酸单晶生长的影响

采用高压技术实现了500 MPa下聚左旋乳酸(PLLA)在稀薄二甲苯溶液中的单晶生长,采用透射电子显微镜、拉曼光谱和红外光谱对样品的结晶形态和结构进行了表征,考察了高压对聚左旋乳酸单晶生长行为的影响。结果表明,在相同的结晶温度和时间下,高压结晶PLLA的单晶仍为α-型晶体,但单晶尺寸明显大于常压样品;高压环境下PLLA分子链在晶核两端的生长扩散速率不同,容易形成非对称的菱晶形态;高压影响PLLA晶体中分子链的构象分布;在单晶生长期,高压诱导有利于PLLA晶体成核,但不利于单晶生长。     

单个人类端粒重复序列d(TTAGGG)对长链端粒DNA-d[AGGG(TTAGGG)_6]结构影响的研究（英文）

本文使用超速离心沉降速度法、聚丙烯酰胺凝胶电泳和圆二色光谱和紫外吸收检测熔融实验研究了长序列端粒DNA-d[AGGG(TTAGGG)_6](G_6-DNA)的结构以及单个重复序列DNA-d(TTAGGG)(G_(01)-DNA)对G_6-DNA结构的影响.结果表明G_6-DNA可以在水溶液中形成二聚体,并且G_(01)-DNA可以通过与G_6-DNA结合形成额外的G-四链体结构,从而改变单体与二聚体的平衡.然而,G_(01)-DNA对序列为d[AGGG(TTAGGG)_3](G_3-DNA)的结构没有影响.该研究为长序列单链端粒DNA的结构多样性提供了新的见解.     

基于19F化学标记磷酸化泛素的温度传感器开发

泛素是一种真核细胞信号分子,主要参与蛋白质降解和DNA修复等生命活动.泛素Ser65位被磷酸化之后,在溶液中呈现两个稳定的溶液构象,这两种构象的比例能够被pH调控,本研究利用NMR进一步发现它还受到温度影响.基于该发现,对磷酸化泛素进行了¹⁹F化学标记,利用¹⁹F NMR方法表征了不同温度下磷酸化泛素两种构象的比例,发现两者比例变化与温度之间的关系可以通过线性方程来描述,利用该方程可以通过构象比例计算样品内部温度,因此可以作为一种基于NMR检测的温度传感器.本文所开发的基于¹⁹F化学标记磷酸化泛素的温度传感器不仅能够作为体外样品温度检测的有力工具,还有望用于检测细胞内部的温度.从而有助于揭示生物学特性和功能.     

低聚核苷酸d(GGTATACC)2的1H和13C NMR研究

通过综合分析2D ¹H NOE谱(混合时间100ms),¹³C-¹H异核多量子化学位移相关谱和¹H双量子滤波化学位移相关谱归属了低聚脱氧核糖核酸片断d(GGTATACC)₂ ¹H和¹³C的化学位移.该8聚核苷酸在溶液中为双螺旋B型结构,各碱基相对于糖环呈反式构象,糖环本身则均以C2'-endo构象为主.     

利用液体核磁共振技术解析核酸四链体结构（英文）

富含G碱基的DNA和RNA序列能够形成四股的G-四链体.基于液体核磁共振波谱在G-四链体结构、动力学、相互作用研究中的核心地位,该综述详细回顾阐述了G-四链体结构和相互作用研究中的核磁共振方法、技术和进展.     

肿瘤细胞DNA样品基于二次谐波发生(SHG)的非线性光谱学成像

二次谐波的产生是一个二阶非线性光学过程,这个过程只发生在中心对称系数不为零的非中心对称区域。利用二次谐波显微技术可以对各种具有内源性信号的生物组织进行无损伤实时成像,如结缔组织的胶原纤维或肌细胞的肌动球蛋白。在生物化学和结构生物学中,虽然DNA是由脱氧核糖核苷酸构成而蛋白质是由氨基酸残基组成,但是DNA和蛋白质大分子高级结构的形成机制是相似的。利用光谱学成像技术对不同DNA样品进行检测,获取DNA样品的SHG信号并进行高解析度成像。这些DNA样品包括基因组DNA溶液、细胞核提取物以及培养细胞的细胞核。实验结果表明在常规条件下可以获得基因组DNA溶液和细胞核提取物的SHG信号,但几乎观测不到来自培养细胞核区的SHG信号。通过在培养基中添加少量无水乙醇(体积比小于5%),可以在培养细胞的细胞核区域检测到SHG信号。推测在培养细胞中乙醇和DNA相互作用引起DNA分子构象发生变化,这些变化可能导致了DNA分子非线性光学性质的改变。     

G-四链体结构及其应用的光谱学研究

G-四链体是指一种由富含G碱基核酸序列通过G平面的π—π堆积形成的一种特殊的核酸二级结构。本文介绍作者课题组利用光谱表征方法(紫外可见光吸收、圆二色、拉曼、核磁共振光谱等)在G-四链体结构研究领域的最新进展。同时,对本组利用这些光谱技术研究G-四链体DNA酶的相关工作也一并介绍。     

Noninvasive assessment of abdominal adipose tissues and quantification of hepatic and pancreatic fat fractions in type 2 diabetes mellitus

The purpose of this study was to evaluate adipose tissue distributions and hepatic and pancreatic fat contents using a 6-point Dixon MRI technique in type 2 diabetes mellitus (T2DM), and to assess associations between fat distributions and biochemical markers of insulin resistance. Intra-abdominal MRI was investigated in 14 T2DM patients, 13 age- and sex-matched healthy controls (HC) and 11 young HC using a 3 T Prisma MRI scanner. All T2DM subjects completed a fasting comprehensive metabolic panel, and demographic measurements were taken according to standardized methodologies. We observed excellent correlation (R² = 0.94) between hepatic fat fraction quantified using 6-point Dixon MRI and gold standard MRS, establishing the accuracy and reliability of the Dixon technique. Significantly increased visceral adipose tissue (VAT) volumes were found in T2DM patients compared to age-matched HC (1569.81 ± 670.62 cm³ vs. 1106.60 ± 566.85 cm³, p = .04). We also observed a trend of increasing subcutaneous adipose tissues (SAT), and total abdominal fat (TAT) volumes in T2DM compared to age-matched HC. Hepatic fat fraction percentage (HFF%) was 44.6% higher in T2DM compared to age-matched HC and 64.4% higher compared to young HC. Pancreatic fat fractions in the head and body/tail were higher in T2DM patients compared to both healthy cohorts. We also observed correlations between fat contents of the liver and pancreas in T2DM patients, and association between biochemical markers of T2DM with HFF, indicating a risk for non-alcoholic fatty liver disease among T2DM. In summary, this study provides evidence of T2DM patients having increased liver and pancreatic fat, as well as increased adipose tissues.     

3D 1H-13C-14N correlation solid-state NMR spectrum

Nitrogen-14 (spin I = 1) has always been a nucleus difficult to observe in solid-state NMR and until recently its observation was restricted to one-dimensional (1D) spectra. We present here the first 3D ¹H–¹³C–¹⁴N NMR correlation spectrum. This spectrum was acquired on a test sample l-histidine·HCl·H₂O using a recently developed technique, which consists in indirectly observing ¹⁴N nuclei via dipolar recoupling with an HMQC-type experiment.     

Stable isotope-enhanced two- and three-dimensional diffusion ordered C NMR spectroscopy (SIE-DOSY C NMR)

The feasibility of obtaining high quality homonuclear or heteronuclear diffusion-ordered ¹³C NMR data is shown to be greatly improved by using ¹³C isotopically-enriched samples. Stable isotope-enhanced diffusion ordered (SIE-DOSY) ¹³C NMR has been applied to ¹³C-enriched carbohydrates, and has been used to determine diffusion coefficients for pentose and hexose monosaccharides, and a disaccharide and trisaccharide. These 2D spectra were obtained with as little as 8 min of acquisition time. Fully resolved 3D DOSY-HMQC NMR spectra of [U-¹³C]xylose, [U-¹³C]glucose, and [1-¹³C^gal]lactose were obtained in 5 h. Sample derivatization with [carbonyl-¹³C]acetate (peracetylation) extends the usefulness of the technique to included non-labeled sugars; the ¹³C-carbonyl – carbohydrate ring proton ¹H–¹³C correlations also provide additional structural information, as shown for the 3-D DOSY-HMQC analysis of a mixture of maltotriose and lactose per-[carbonyl-¹³C]acetates.     

Methyl and t-butyl reorientation in an organic molecular solid

We have determined the molecular and crystal structure of 4,5-dibromo-2,7-di-t-butyl-9,9-dimethylxanthene and measured the ¹H spin–lattice relaxation rate from 87 to 270 K at NMR frequencies of ω/2π=8.50, 22.5, and 53.0 MHz. All molecules in the crystal see the same intra and intermolecular environment and the repeating unit is half a molecule. We have extended models developed for ¹H spin–lattice relaxation resulting from the reorientation of a t-butyl group and its constituent methyl groups to include these rotors and the 9-methyl groups. The relaxation rate data is well-fitted assuming that the t-butyl groups and all three of their constituent methyl groups, as well as the 9-methyl groups all reorient with an NMR activation energy of 15.8±1.6 kJ mol⁻¹ corresponding to a barrier of 17.4±3.2 kJ mol⁻¹. Only intramethyl and intra-t-butyl intermethyl spin–spin interactions need be considered. A unique random-motion Debye (or BPP) spectral density will not fit the data for any reasonable choice of parameters. A distribution of activation energies is required.     

射干中一个新异黄酮的核磁共振研究

从射干中分离得到一个新异黄酮及结构相似的两个异黄酮类化合物,即 5,7,3′-三羟基-6,2′,5′-三甲氧基异黄酮, 5,7,3′-三羟基-6,4′,5′-三甲氧基异黄酮（野鸢尾黄素）和它的苷（野鸢尾苷）. 它们的结构都通过¹H NMR, ¹³C NMR 确定. 新异黄酮的结构通过MS, HMBC, HSQC 和 NOESY进一步确定.     

Synthesis and Chiral Recognition Properties of Novel Fluorescent Chemosensors for Amino Acid

The charge neutral chiral optical sensors 1a∼d containing thiourea and amide groups were synthesized by simple steps in good yields and their structures were characterized by IR, ¹H NMR, ¹³C NMR, MS spectra and elemental analysis. The enantioselective recognition for α-phenylglycine and phenylglycinol was examined by fluorescence emission and UV-vis spectra. The fluorescence and UV-vis spectra changes of 1a were obvious when the enantiomers of α-phenylglycine anion were added, which exhibited that 1a has good enantioselective recognition ability towards α-phenylglycine. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Optimization and mechanism exploration for Escherichia coli transformed with plasmid pUC19 by the combination with ultrasound treatment and chemical method

As a basic technique of molecular cloning, bio-transformation has been successfully used in the fields of biomedicine and food processing. In this study, we established a transformation system of exogenous DNA into E. coli cells mediated by ultrasound. Under the optimal conditions (i.e. 35 °C, 40 W, 25 s, OD600 = 0.4–0.6) optimized by RSM, the transformation efficiency reached at 1.006 × 10⁷ CFU/μg DNA. The results of membrane permeability, macromolecular substance and cell structure analysis before and after ultrasound treatment showed that the damage of host cells induced by lower (40 W) ultrasound and shorter ultrasound time (25 s) was reversible, and the transformation efficiency and cell survival rate were not significantly affected under this condition. In brief, proper changes in cell membrane and cell wall were the basic conditions for host cells to uptake exogenous DNA, while, whether exogenous DNA could be replicated and expressed in cells depends on the viability of host cells.     

High-resolution solid-state NMR of anisotropically mobile molecules under very low-power H decoupling and moderate magic-angle spinning

We show that for observing high-resolution heteronuclear NMR spectra of anisotropically mobile systems with order parameters less than 0.25, moderate magic-angle spinning (MAS) rates of 11 kHz combined with ¹H decoupling at 1–2 kHz are sufficient. Broadband decoupling at this low ¹H nutation frequency is achieved by composite pulse sequences such as WALTZ-16. We demonstrate this moderate MAS low-power decoupling technique on hydrated POPC lipid membranes, and show that 1 kHz ¹H decoupling yields spectra with the same resolution and sensitivity as spectra measured under 50 kHz ¹H decoupling when the same acquisition times (50 ms) are used, but the low-power decoupled spectra give higher resolution and sensitivity when longer acquisition times (>150 ms) are used, which are not possible with high-power decoupling. The limits of validity of this approach are explored for a range of spinning rates and molecular mobilities using more rigid membrane systems such as POPC/cholesterol mixed bilayers. Finally, we show ¹⁵N and ¹³C spectra of a uniaxially diffusing membrane peptide assembly, the influenza A M2 transmembrane domain, under 11 kHz MAS and 2 kHz ¹H decoupling. The peptide ¹⁵N and ¹³C intensities at low-power decoupling are 70–80% of the high-power decoupled intensities. Therefore, it is possible to study anisotropically mobile lipids and membrane peptides using liquid-state NMR equipment, relatively large rotors, and moderate MAS frequencies.     

Laser micro-machined semi-slinky like MEMS structures: Novel interface coolers

Laser micro-machining has recently been considered a precision and reproducible manufacturing technique in MEMS fabrication because of the superior characteristics of a focused laser beam. It is not only a unique tool but also an invisible optical drill. The aim of the present paper is two-fold: to manufacture novel miniaturized titanium 3D MEMS surface structures in order to increase the cooling performance. Second is to find the behaviors of the operational parameters which controlling the laser-material interaction mechanisms and also suggest the best adjustments in order to achieve this novel semi-slinky like spiral MEMS surface structures with using a 20 W ytterbium fiber laser. Pure titanium micro-MEMS product which has novel interface coolers was manufactured using a ytterbium fiber laser (λ=1060 nm) with 40 ns pulse duration. Best adjustments were, respectively, the pulse duration: 40 ns, the pulse energy: 0.4 mJ, the laser scanning speed: 336.1 mm/s, the peak power density: 17.46 ? 10⁸ W/cm².     

High-resolution solid-state NMR spectroscopy of protons with homonuclear dipolar decoupling schemes under magic-angle spinning

High-resolution NMR spectroscopy of ¹H spins in the solid state is normally rendered difficult due to the strong homonuclear ¹H–¹H dipolar couplings. Even under very high-speed magic-angle spinning (MAS) at ca. 60–70 kHz, these couplings are not completely removed. An appropriate radiofrequency pulse scheme is required to average out the homonuclear dipolar interactions in combination with MAS to get high-resolution ¹H NMR spectrum in solid state. Several schemes have been introduced in the recent past with a variety of applications also envisaged. Development of some of these schemes has been made possible with a clear understanding of the underlying spin physics based on bimodal Floquet theory. The utility of these high-resolution pulse schemes in combination with MAS has been demonstrated for spinning speeds of 10–65 kHz in a range of ¹H Larmor frequencies from 300 to 800 MHz.