Near infrared analysis of blends of sulfonated polystyrene ionomers and poly(ε‐caprolactam)

Near infrared spectroscopy (NIR) was used to characterize the nature of specific interactions in blends of lightly sulfonated polystyrene ionomers (M‐SPS where M = Zn⁺², Mn⁺², or Li⁺) and polycaprolactam (PA6). The assignments of the NIR overtone bands that arise due to the interactions between the cation of the ionomer, and the amide groups were made using spectra of model compounds. The relative populations of the different environments of the N? H groups were qualitatively determined by deconvoluting the NIR spectra into five absorbances representing hydrogen‐bonded N? H in crystalline and amorphous phases and an ion‐amide complex. The ion‐amide complex was specific for the blends. The interpolymer interactions were sensitive to composition and temperature, but qualitatively the behavior was the same for all three ionomer salts investigated. © 2008 Wiley Periodicals, Inc. JPolym Sci Part B: Polym Phys 46: 1602–1610, 2008     

Self‐Assembled Multimetallic/Peptide Complexes: Structures and Unimolecular Reactions of [Mn(GlyGly−H)2n−1]+ and Mn+1(GlyGly−H2n]2+ Clusters in the Gas Phase

The unimolecular chemistry and structures of self‐assembled complexes containing multiple alkaline‐earth‐metal dications and deprotonated GlyGly ligands are investigated. Singly and doubly charged ions [M_n(GlyGly?H)_n‐1]⁺ (n=2–4), [M_n+1(GlyGly?H)_2n]²⁺ (n=2,4,6), and [M(GlyGly?H)GlyGly]⁺ were observed. The losses of 132 Da (GlyGly) and 57 Da (determined to be aminoketene) were the major dissociation pathways for singly charged ions. Doubly charged Mg²⁺ clusters mainly lost GlyGly, whereas those containing Ca²⁺ or Sr²⁺ also underwent charge separation. Except for charge separation, no loss of metal cations was observed. Infrared multiple photon dissociation spectra were the most consistent with the computed IR spectra for the lowest energy structures, in which deprotonation occurs at the carboxyl acid groups and all amide and carboxylate oxygen atoms are complexed to the metal cations. The N?H stretch band, observed at 3350 cm^?1, is indicative of hydrogen bonding between the amine nitrogen atoms and the amide hydrogen atom. This study represents the first into large self‐assembled multimetallic complexes bound by peptide ligands.     

Clusters of Ammonium Cation—Hydrogen Bond versus σ‐Hole Bond

MP2/6‐311++G(d,p) calculations were performed on the NH₄⁺ ??? (HCN)_n and NH₄⁺ ??? (N₂)_n clusters (n=1–8), and interactions within them were analyzed. It was found that for molecules of N₂ and HCN, the N centers play the role of the Lewis bases, whereas the ammonium cation acts as the Lewis acid, as it is characterized by sites of positive electrostatic potential, that is, H atoms and the sites located at the N atom in the extension of the H?N bonds. Hence, the coordination number for the ammonium cation is eight, and two types of interactions of this cation with the Lewis base centers are possible: N?H ??? N hydrogen bonds and H?N ??? N interactions that are classified as σ‐hole bonds. Redistribution of the electronic charge resulting from complexation of the ammonium cation was analyzed. On the one hand, the interactions are similar, as they lead to electronic charge transfer from the Lewis base (HCN or N₂ in this study) to NH₄⁺. On the other hand, the hydrogen bond results in the accumulation of electronic charge on the N atom of the NH₄⁺ ion, whereas the σ‐hole bond results in the depletion of the electronic charge on this atom. Quantum theory of “atoms in molecules” and the natural bond orbital method were applied to deepen the understanding of the nature of the interactions analyzed. Density functional theory/natural energy decomposition analysis was used to analyze the interactions of the ammonium ion with various types of Lewis bases. Different correlations between the geometrical, energetic, and topological parameters were found and discussed.     

Quantitative study on hydrogen bonding between urethane compound and ethers by infrared spectroscopy

A quantitative infrared spectroscopic study of a model urethane-type compound was carried out in order to obtain basic data on hydrogen bonding in polyurethanes. First, the absolute intensity of free N? H groups of N-phenylurethane, which was adopted as the model urethane, was determined by Wilson-Wells' method to be 3.59 × 10³l./mole-cm.². The free N? H of this urethane absorbed at 3447 cm.^?1, and hydrogen-bonded N? H absorbed near 3300 cm.^?1. Then, the extents of hydrogen bonding of the urethane at various concentrations were determined, and the hydrogen bonding between the urethane and ethers was studied by using the above-mentioned absolute intensity. For comparison, diphenylamine was also used as proton donor. Di-n-butyl ether and poly-(oxyethylene glycol) were examined and proved to be able to act as proton acceptors. The frequency shifts of N? H stretching vibration of diphenylamine and N-phenylurethane caused by hydrogen bonding with di-n-butyl ether were 96 cm.^?1 and 150 cm.^?1, respectively. The equilibrium constants were 4.8 × 10^?1l./mole for the former system 4.6 × 10^?1l./mole for the latter.     

catena‐Poly­[[di­aqua­lithium(I)]‐μ‐[9H‐purine‐2,6(1H,3H)‐dionato‐O2:N7]]

In the title compound, [Li(C₅H₃N₄O₂)(H₂O)₂]_n, the coordinate geometry about the Li⁺ ion is distorted tetrahedral and the Li⁺ ion is bonded to N and O atoms of adjacent ligand mol­ecules forming an infinite polymeric chain with Li—O and Li—N bond lengths of 1.901 (5) and 2.043 (6) Å, respectively. Tetrahedral coordination at the Li⁺ ion is completed by two cis water mol­ecules [Li—O 1.985 (6) and 1.946 (6) Å]. The crystal structure is stabilized both by the polymeric structure and by a hydrogen‐bond network involving N—H?O, O—H?O and O—H?N hydrogen bonds.     

Molecular Structure,Vibrational Spectra,and Hydrogen Bonding of the Ionic Liquid 1‐Ethyl‐3‐methyl‐1H‐imidazolium Tetrafluoroborate

The IR and Raman spectra and conformations of the ionic liquid 1‐ethyl‐3‐methyl‐1H‐imidazolium tetrafluoroborate, [EMIM] [BF₄] ( 6 ), were analyzed within the framework of scaled quantum mechanics (SQM). It was shown that SQM successfully reproduced the spectra of the ionic liquid. The computations revealed that normal modes of the EMIM⁺?BF ion pair closely resemble those of the isolated ions EMIM⁺ and BF , except for the antisymmetric BF stretching vibrations of the anion, and the out‐of‐plane and stretching vibrations of the H? C(2) moiety of the cation. The most plausible explanation for the pronounced changes of the latter vibrations upon ion‐pair formation is the H‐bonding between H? C(2) and BF . However, these weak H‐bonds are of minor importance compared with the Coulomb interactions between the ions that keep them closely associated even in dilute CD₂Cl₂ solutions. According to the ‘gas‐phase’ computations, in these associates, the BF anion is positioned over the imidazolium ring of the EMIM⁺ cation and has short contacts not only with the H? C(2) of the latter, but also with a proton of the Me? N(3) group.     

An analytic potential energy function for the amide–amide and amide–water intermolecular hydrogen bonds in peptides

An analytic potential energy function is proposed and applied to evaluate the amide–amide and amide–water hydrogen‐bonding interaction energies in peptides. The parameters in the analytic function are derived from fitting to the potential energy curves of 10 hydrogen‐bonded training dimers. The analytic potential energy function is then employed to calculate the N? H…O?C, C? H…O?C, N? H…OH₂, and C?O…HOH hydrogen‐bonding interaction energies in amide–amide and amide–water dimers containing N‐methylacetamide, acetamide, glycine dipeptide, alanine dipeptide, N‐methylformamide, N‐methylpropanamide, N‐ethylacetamide and/or water molecules. The potential energy curves of these systems are therefore obtained, including the equilibrium hydrogen bond distances R(O…H) and the hydrogen‐bonding energies. The function is also applied to calculate the binding energies in models of β‐sheets. The calculation results show that the potential energy curves obtained from the analytic function are in good agreement with those obtained from MP2/6‐31+G** calculations by including the BSSE correction, which demonstrate that the analytic function proposed in this work can be used to predict the hydrogen‐bonding interaction energies in peptides quickly and accurately. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2009     

Three‐dimensional hydrogen‐bonded structures in the hydrated proton‐transfer salts of isonipecotamide with the dicarboxylic oxalic and adipic acid homologues

The structures of the 1:1 hydrated proton‐transfer compounds of isonipecotamide (piperidine‐4‐carboxamide) with oxalic acid, 4‐carbamoylpiperidinium hydrogen oxalate dihydrate, C₆H₁₃N₂O⁺·C₂HO₄⁻·2H₂O, (I), and with adipic acid, bis(4‐carbamoylpiperidinium) adipate dihydrate, 2C₆H₁₃N₂O⁺·C₆H₈O₄²⁻·2H₂O, (II), are three‐dimensional hydrogen‐bonded constructs involving several different types of enlarged water‐bridged cyclic associations. In the structure of (I), the oxalate monoanions give head‐to‐tail carboxylic acid O—H...O_carboxyl hydrogen‐bonding interactions, forming C(5) chain substructures which extend along a. The isonipecotamide cations also give parallel chain substructures through amide N—H...O hydrogen bonds, the chains being linked across b and down c by alternating water bridges involving both carboxyl and amide O‐atom acceptors and amide and piperidinium N—H...O_carboxyl hydrogen bonds, generating cyclic R₄³(10) and R₃²(11) motifs. In the structure of (II), the asymmetric unit comprises a piperidinium cation, half an adipate dianion, which lies across a crystallographic inversion centre, and a solvent water molecule. In the crystal structure, the two inversion‐related cations are interlinked through the two water molecules, which act as acceptors in dual amide N—H...O_water hydrogen bonds, to give a cyclic R₄²(8) association which is conjoined with an R₄⁴(12) motif. Further N—H...O_water, water O—H...O_amide and piperidinium N—H...O_carboxyl hydrogen bonds give the overall three‐dimensional structure. The structures reported here further demonstrate the utility of the isonipecotamide cation as a synthon for the generation of stable hydrogen‐bonded structures. The presence of solvent water molecules in these structures is largely responsible for the non‐occurrence of the common hydrogen‐bonded amide–amide dimer, promoting instead various expanded cyclic hydrogen‐bonding motifs.     

The structure of a valinomycin–hexaaquamagnesium trifluoromethanesulfonate compound

Valinomycin is a naturally occurring cyclic dodecadepsipeptide with the formula cyclo‐[d ‐HiVA→l ‐Val →l ‐LA→l ‐Val]₃ (d ‐HiVA is d ‐α‐hydroxyisovaleic acid, Val is valine and LA is lactic acid), which binds a K⁺ ion with high selectively. In the past, several cation‐binding modes have been revealed by X‐ray crystallography. In the K⁺, Rb⁺ and Cs⁺ complexes, the ester O atoms coordinate the cation with a trigonal antiprismatic geometry, while the six amide groups form intramolecular hydrogen bonds and the network that is formed has a bracelet‐like conformation (Type 1 binding). Type 2 binding is seen with the Na⁺ cation, in which the valinomycin molecule retains the bracelet conformation but the cations are coordinated by only three ester carbonyl groups and are not centrally located. In addition, a picrate counter‐ion and a water molecule is found at the center of the valinomycin bracelet. Type 3 binding is observed with divalent Ba²⁺, in which two cations are incorporated, bridged by two anions, and coordinated by amide carbonyl groups, and there are no intramolecular amide hydrogen bonds. In this paper, we present a new Type 4 cation‐binding mode, observed in valinomycin hexaaquamagnesium bis(trifluoromethanesulfonate) trihydrate, C₅₄H₉₀N₆O₁₈·[Mg(H₂O)₆](CF₃SO₃)₂·3H₂O, in which the valinomycin molecule incorporates a whole hexaaquamagnesium ion, [Mg(H₂O)₆]²⁺, via hydrogen bonding between the amide carbonyl groups and the hydrate water H atoms. In this complex, valinomycin retains the threefold symmetry observed in Type 1 binding, but the amide hydrogen‐bond network is lost; the hexaaquamagnesium cation is hydrogen bonded by six amide carbonyl groups. ¹H NMR titration data is consistent with the 1:1 binding stoichiometry in acetonitrile solution. This new cation‐binding mode of binding a whole hexaaquamagnesium ion by a cyclic polypeptide is likely to have important implications for the study of metal binding with biological models under physiological conditions.     

(S,S)‐4′′‐Cyano‐7,7′′‐dimethoxy‐3′,6′‐dioxodispiro[indane‐2,2′‐piperazine‐5′,2′′‐indane]‐4‐carboxamide methanol solvate: interrupting the amide‐to‐amide hydrogen‐bonded tape

The title methanol solvate, C₂₄H₂₂N₄O₅·CH₃OH, forms an extended three‐dimensional hydrogen‐bonded structure, assisted by the presence of several good donor and acceptor sites. It shows none of the crystal packing features typically expected of piperazinediones, such as amide‐to‐amide R₂²(8) hydrogen bonding. In this structure the methanol solvent appears to play only a space‐filling role; it is not involved in any hydrogen bonding and instead is disordered over several sites. This study reports, to the best of our knowledge, the first crystal structure of an indane‐containing piperazinedione compound which exhibits a three‐dimensional hydrogen‐bonded structure formed by classical (N—H...O and N—H...N) hydrogen‐bonding interactions.     

Fourier transform infrared/attenuated total reflectance analysis of water diffusion in poly[styrene‐b‐isobutylene‐ b‐styrene] block copolymer membranes

A Fourier transform infrared/attenuated total reflectance technique was used to study the diffusion of water through poly(styrene‐b‐isobutylene‐b‐styrene) block copolymers (BCPs), as well as sulfonated (H⁺) and Na⁺‐sulfonated ionomer versions. Diffusion data were collected and interpreted for these membranes versus polystyrene block composition, degree of sulfonation, Na⁺ ion content in the ionomers, and the effect of initially dry versus prehydrated conditions. An “early time” diffusion coefficient, D, decreased with increasing percent polystyrene for a series of unmodified BCPs. D decreased with increasing degree of sulfonation, and with increasing ion content for the Na⁺‐exchanged samples and this was interpreted in terms of diffusion limitations caused by a strong tendency for ion hydration. The method also yielded information relating to the time evolution of water structure from the standpoint of degree of intermolecular hydrogen bonding. Membrane prehydration causes profound increases in D for both the unmodified BCP and sulfonated samples, as in plasticization. The simultaneous acquisition of information relating to interactions between water molecules and interactions of water molecules with functional groups on the host polymer matrix offers more information than conventional diffusion measurement techniques that simply count transported molecules. © 2005 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 43: 764–776, 2005     

2,3‐Dihydro‐1,3‐benzothiazol‐2‐iminium monohydrogen sulfate and 2‐iminio‐2,3‐dihydro‐1,3‐benzothiazole‐6‐sulfonate: a combined structural and theoretical study

The 2‐aminobenzothiazole sulfonation intermediate 2,3‐dihydro‐1,3‐benzothiazol‐2‐iminium monohydrogen sulfate, C₇H₇N₂S⁺·HSO₄⁻, (I), and the final product 2‐iminio‐2,3‐dihydro‐1,3‐benzothiazole‐6‐sulfonate, C₇H₆N₂O₃S₂, (II), both have the endocyclic N atom protonated; compound (I) exists as an ion pair and (II) forms a zwitterion. Intermolecular N—H...O and O—H...O hydrogen bonds are seen in both structures, with bonding energy (calculated on the basis of density functional theory) ranging from 1.06 to 14.15 kcal mol⁻¹. Hydrogen bonding in (I) and (II) creates DDDD and C(8)C(9)C(9) first‐level graph sets, respectively. Face‐to‐face stacking interactions are observed in both (I) and (II), but they are extremely weak.     

Chlor­amine‐B sesquihydrate

In the title compound, sodium N‐chloro­benzene­sulfon­amide sesquihydrate, Na⁺·C₆H₅ClNO₂S^?·1.5H₂O, the sodium ion exhibits octahedral coordination by O atoms from three water mol­ecules and by three sulfonyl O atoms of three different N‐­chloro­benzene­sulfon­amide anions. A two‐dimensional polymeric layer consists of units, each comprising two face‐sharing octahedra which share four corners with four other such units, the layer running parallel to the ab plane. The water mol­ecules participate in hydrogen bonds of the types O—H?O, O—H?N and O—H?Cl.     

Poly[diaqua[μ4‐4‐(isonicotinamido)phthalato]nickel(II)] displaying an sra topology

In the title compound, [Ni(C₁₄H₈N₂O₅)(H₂O)₂]_n, the Ni^II cation is six‐coordinate with a slightly distorted octahedral coordination geometry and the 4‐(isonicotinamido)phthalate ligand links the Ni^II centres into a three‐dimensional structure with sra topology. The structure is also stabilized by N—H...O hydrogen bonding between the uncoordinated amide groups of the ligand and extensive O—H...O hydrogen bonding between the two coordinated water molecules. The magnetic and thermal stability properties of the title compound are also discussed.     

(15N) acetamide in polar solvents: Hindered internal rotation and intermolecular interactions

The ¹H spectrum of (¹⁵N)acetamide has been measured in dimethyl sulphoxide (DMSO), methyl propyl ketone (MPK), 1,3-dioxane, 1,4-dioxane, D₂O, acetonitrile and pyridine-d₅ at various temperature intervals within the range of 278–343 K. From the temperature dependence of the NMR spectra of the amide protons, the free energy of activation, ΔG^≠, for hindered rotation about the central C? N bond was determined by means of total line shape analysis in the four solvents DMSO, MPK and the two dioxanes. Observed values of ΔG^≠ (298 K) (72.7 in DMSO, 70.1 in MPK, 70.0 in 1,3-dioxane and 70.1 kJ mol¹ in 1,4-dioxane) were not very sensitive to the choice of solvent or concentration. The concentration dependence of the internal chemical shift between the amide protons was studied in MPK, D₂O, acetonitrile and pyridine-d₅. The free energy of activation and the internal chemical shift are discussed on the basis of solvent-amide and amide–amide specific hydrogen bonding interactions, and in comparison to the results of molecular orbital calculations.     

Ortho effects in organic molecules on electron impact: XI—the interesting ortho effect of the methoxy group in o-methoxy aromatic thioamides

It has been noticed that the major part of the loss of ?H from the molecular ion of most of the o-methoxythioamides results from an ortho effect of the methoxy group. Comparison of the MIKE spectra of the [M? SH]⁺ of 1-(2-methoxyphenylthioxomethyl)piperidine and 1-(2-methoxyphenylthioxomethyl)pyrrolidine with the MIKE spectra of [M? SH]⁺ of the corresponding unsubstituted compounds, reported earlier, indicated two parallel pathways for the formation of [M? SH]⁺ in the o-methoxy compounds. In the first pathway, as has been noticed in thioamides in general, the loss of ?H involves the migration of either the α-hydrogen in the amine moiety or the hydrogen attached to nitrogen. In the second pathway, the migration of a hydrogen from the o-methoxy group to the sulphur atom followed by ejection of SH from the molecular ion leads to a stable cyclized ion. Interesting secondary fragmentations as a consequence of this ortho effect have also been noticed.     

Zoledronate complexes. I. Poly[[μ2‐aqua[μ3‐1‐hydroxy‐2‐(1H,3H‐imidazol‐3‐ium‐1‐yl)ethylidenediphosphonato]potassium(I)] monohydrate]

The title compound, {[K(C₅H₉N₂O₇P₂)(H₂O)]·H₂O}_n, is polymeric and consists of layers parallel to (001) interconnected by hydrogen‐bonding and π–π interactions. The K⁺ cation is eightfold coordinated in a KO₈ environment by O atoms from three different chelating zoledronate units and two coordinated water molecules. The zoledronate group presents its usual zwitterionic character, with negative charges in the singly protonated phosphonate groups and a positive charge at the protonated imidazole N atom. The anion binds to three different K⁺ cations in a (so far unreported) triply chelating manner. Intra‐ and interplanar interactions are enhanced by a variety of hydrogen bonds involving all available O—H and N—H donors. A strong imidazole–phosphonate C—H...O interaction is present in the structure.     

Acet­amidoxime

The oxime of acet­amide, viz. N‐hydroxy­ethanimid­amide, C₂H₆N₂O, has a complex hydrogen‐bonding arrangement in its crystal structure, featuring one strong O—H⋯N hydrogen bond together with weaker hydrogen bonding involving the amide groups. Conjugation effects lead to atypical distances and angles.     

Sulfonate salts of the therapeutic agent dapsone: 4‐[(4‐aminophenyl)sulfonyl]anilinium benzenesulfonate monohydrate and 4‐[(4‐aminophenyl)sulfonyl]anilinium methanesulfonate monohydrate

Dapsone, formerly used to treat leprosy, now has wider therapeutic applications. As is the case for many therapeutic agents, low aqueous solubility and high toxicity are the main problems associated with its use. Derivatization of its amino groups has been widely explored but shows no significant therapeutic improvements. Cocrystals have been prepared to understand not only its structural properties, but also its solubility and dissolution rate. Few salts of dapsone have been described. The title salts, C₁₂H₁₃N₂O₂S⁺·C₆H₅O₃S⁻·H₂O and C₁₂H₁₃N₂O₂S⁺·CH₃SO₃⁻·H₂O, crystallize as hydrates and both compounds exhibit the same space group (monoclinic, P2₁/n). The asymmetric unit of each salt consists of a 4‐[(4‐aminophenyl)sulfonyl]anilinium monocation, the corresponding sulfonate anion and a water molecule. The cation, anion and water molecule form hydrogen‐bonded networks through N—H…O=S, N—H…O_water and O_water—H…O=S hydrogen bonds. For both salts, the water molecules interact with one sulfonate anion and two anilinium cations. The benzenesulfonate salt forms a two‐dimensional network, while the hydrogen bonding within the methanesulfonate salt results in a three‐dimensional network.