Band broadening of DNA fragments isolated by polyacrylamide gel electrophoresis in capillary electrophoresis

Polyacrylamide gel electrophoresis (PAGE) is used frequently for isolation and purification of DNA fragments. In the present study, DNA fragments extracted from polyacrylamide gels showed significant band broadening in capillary electrophoresis (CE). A pHY300PLK (a shuttle vector functioning in Escherichia coli and Bacillus subtilis) marker, which contained nine fragments ranging from 80 to 4870 bp, was separated by PAGE, and each fragment was isolated by phenol/chloroform extraction and ethanol precipitation. After extraction from the polyacrylamide gel, the peaks of the isolated DNA fragments exhibited band broadening in CE, where a linear poly(ethylene oxide) was used as a sieving matrix. The theoretical plate numbers of the DNA fragments contained in the pHY300PLK marker were >10⁶ for all the fragments before extraction. However, the DNA fragments extracted from the polyacrylamide gel showed decreased theoretical plate numbers (5–20 times smaller). The degradation of the theoretical plate number was significant for middle sizes of the DNA fragments ranging from 489 to 1360 bp, whereas the largest and smallest fragments (80 and 4870 bp) had no obvious influence. The band broadening was attributed to contamination of the DNA fragments by polyacrylamide fibers during the separation and extraction process.     

Extracolumn band broadening in capillary liquid chromatography

A commercially available capillary LC instrument was modified to investigate and control the contribution of different instrument components on extracolumn band broadening. Quantitative estimations of dispersion induced by several equipmental parts were carried out. Injection parameters could be optimized to achieve the theoretical value of 12 for a profile factor describing a rectangular sample profile. Additionally, an additive injector flow channel dependent dispersion effect was found. A practical approach for minimizing instrumental effects in capillary LC is suggested. The results were compared with those obtained with an HPLC instrument designed for conventional size columns.     

Band broadening evaluation by back-and-forth capillary electrophoresis

The purpose of this study is to develop a method for precise evaluation of band broadening in capillary electrophoresis. A capillary electrophoresis system with on-column twin detectors is constructed. Back-and-forth electrophoresis permits zones to make a round trip between the twin detectors placed at distant positions on the capillary. The system is capable of eliminating extra-column effects and discriminating between reversible and irreversible band-broadening mechanisms.     

Fluid mechanics of electroosmotic flow and its effect on band broadening in capillary electrophoresis

Electroosmotic flow (EOF) usually accompanies electrophoretic migration of charged species in capillary electrophoresis unless special precautions are taken to suppress it. The presence of the EOF provides certain advantages in separations. It is an alternative to mechanical pumps, which are inefficient and difficult to build at small scales, for transporting reagents and analytes on microfluidic chips. The downside is that any imperfection that distorts the EOF profile reduces the separation efficiency. In this paper, the basic facts about EOF are reviewed from the perspective of fluid mechanics and its effect on separations in free solution capillary zone electrophoresis is discussed in the light of recent advances.     

Peak broadening in capillary zone electrophoresis with electroosmotic flow: Dependence of plate number and resolution on charge number

Summary Based on the Einstein-Nernst equation, describing the relation between diffusion coefficient and ionic mobility, and expression for the plate height and plate number can be obtained which is independent of the diffusion coefficient. This approach was supported by experimental data, obtained from anionic and cationic solutes. An expression for the electrophoretic resolution is introduced that is also independent on diffusion coefficients. The effect of electro-osmotic flow on the separation of anions and cations based on the expressions derived for the plate number and the resolution is discussed.     

Mobilization of electroosmotic flow markers in capillary zone electrophoresis

UV-absorbing neutral substances are commonly used as markers of mean electroosmotic flow in capillary electrophoresis for their zero electrophoretic mobility in an electric field. However, some of these markers can interact with background electrolyte components and migrate at a different velocity than the electroosmotic flow. Thus, we tested 11 markers primarily varying in their degree of methylation and type of central atom in combination with five background electrolyte cations differing in their ionic radii and surface charge density, measuring the relative electrophoretic mobility using thiourea as a reference marker. Our results from this set of experiments showed some general trends in the mobilization of the markers based on the effects of marker structure and type of background electrolyte cation on the relative electrophoretic mobility. As an example, the effects of an inadequate choice of marker on analyte identification were illustrated in the electrophoretic separation of glucosinolates. Therefore, our findings may help electrophoretists appropriately select electroosmotic flow markers for various electrophoretic systems.     

Enantioselective separation of rivastigmine by capillary electrophoresis with cyclodextrines

Different beta-cyclodextrines (beta-cyclodextrin, heptakis (2,3,6-tri-O-methyl)-beta-cyclodextrin, hydroxypropyl-beta-cyclodextrin, and sulfated beta-cyclodextrin) were investigated as additives for the enantioselective separation of the R-form from rivastigmine ((S)-N-ethyl-3-[(1-dimethylamino) ethyl]-N-methyl-phenyl carbamate), contained as impurity in this drug, which is used for the treatment of Alzheimer's disease. Electrophoresis was performed in an acidic background electrolyte (triethanolammonium phosphate, 75 mM, pH 2.5) with various concentrations of the additives. The electrophoretic mobilities measured are typical functions of the additive concentrations, with complex constants (obtained by fitting the appropriate binding curve on the data) ranging between about 180 and 770 M(-1). Best separation was obtained with 7.5 mM beta-cyclodextrin, with the R-enantiomer as impurity migrating before the main S-compound. Intra- and interday reproducibility (n = 6 and 18, respectively) of migration time and peak area was in the low percentage range, linearity of the calibration line for the quantitation of the impurity in the range between 2.3 and 50 microg/ml, expressed by the linear correlation coefficient, was 0.9998. The limits of detection and quantitation, respectively, were 0.7 and 2.3 microg/ml, corresponding to 0.05 and 0.15%, m/m of the R- relative to the S-compound. Analysis can be carried out at 18 degrees C in less than 19 min.     

Determination of organic acids in air by capillary electrophoresis and ion-exclusion chromatography

Summary A capillary electrophoretic (CE) method for the determination of organic acids in the low ppm range is described. The buffer consisted of 5 mM 2,6-pyridinedicarboxylic acid and 0.5 mM cetyltrimethylammonium bromide, pH 5.6. The former served as background electrolyte for indirect UV detection at 200 nm, whereas the latter was used to reverse electroosmotic flow. In <5 min 8 low molecular mass organic acids (oxalic, formic, malonic, glutaric, glycolic, acetic, lactic and propanoic) and two inorganic acids (hydrochloric and sulphuric) were separated. Detection limits for anions tested were 0.04 mg L⁻¹ (lactic acid) to 0.6 mg L⁻¹ (malonic acid). The method was applied to the determination of organic acids in air samples. The CE results when compared with ion-exclusion chromatography (IEC) agreed well. The use of electrokinetic injection in CE proved beneficial for preconcentration of organic acids in real samples. Using electrokinetic injection, preconcentration factors ranging from 14 (hydrochloric acid) to 3 (propanoic acid) were obtained. Presented at Balaton Symposium on High-Performance Separation Methods, Siófok, Hungary, September 1–3, 1999     

Band broadening effects in capillary column recycle gas chromatography with valves

Sources leading to band broadening and peak distortion have been studied in a capillary column recycle system, based on a commercial microvalve. The ferrule system was a major contributor to band broadening. It was found that the quality of connections is very critical but the internal volume of the valve is not important. The pressure pulses resulting from each switching operation produced some band broadening with substances that had just been transferred through the valve but no adverse effects were noticed when they had travelled some distance into the column. Flow into valve cavities and through tees also produced a drop in efficiency. It is not clear whether this is solely due to problems in column connection or if changes in flow pattern also contribute. The activity of the valve toward polar substances was also assessed. No attempt was made to deactivate valve surfaces. The components of the Grob test mixture were almost unaffected but highly polar and acidic compounds such as nitrophenol showed severe losses. No evidence for catalysis was found.     

Analytical study of Joule heating effects on electrokinetic transportation in capillary electrophoresis

Electric fields are often used to transport fluids (by electroosmosis) and separate charged samples (by electrophoresis) in microfluidic devices. However, there exists inevitable Joule heating when electric currents are passing through electrolyte solutions. Joule heating not only increases the fluid temperature, but also produces temperature gradients in cross-stream and axial directions. These temperature effects make fluid properties non-uniform, and hence alter the applied electric potential field and the flow field. The mass species transport is also influenced. In this paper we develop an analytical model to study Joule heating effects on the transport of heat, electricity, momentum and mass species in capillary-based electrophoresis. Close-form formulae are derived for the temperature, applied electrical potential, velocity, and pressure fields at steady state, and the transient concentration field as well. Also available are the compact formulae for the electric current and the volume flow rate through the capillary. It is shown that, due to the thermal end effect, sharp temperature drops appear close to capillary ends, where sharp rises of electric field are required to meet the current continuity. In order to satisfy the mass continuity, pressure gradients have to be induced along the capillary. The resultant curved fluid velocity profile and the increase of molecular diffusion both contribute to the dispersion of samples. However, Joule heating effects enhance the sample transport velocity, reducing the analysis time in capillary electrophoretic separations.     

Band-broadening in capillary zone electrophoresis with axial temperature gradients

It is widely accepted that Joule heating effects yield radial temperature gradients in capillary zone electrophoresis (CZE). The resultant parabolic profile of electrophoretic velocity of analyte molecules is believed to increase the band-broadening via Taylor-Aris dispersion. This typically insignificant contribution, however, cannot explain the decrease in separation efficiency at high electric fields. We show that the additional band-broadening due to axial temperature gradients may provide the answer. These axial temperature variations result from the change of heat transfer condition along the capillary, which is often present in CZE with thermostating. In this case, the electric field becomes nonuniform due to the temperature dependence of fluid conductivity, and hence the induced pressure gradient is brought about to meet the mass continuity. This modification of the electroosmotic flow pattern can cause significant band-broadening. An analytical model is developed to predict the band-broadening in CZE with axial temperature gradients in terms of the theoretical plate height. We find that the resultant thermal plate height can be very high and even comparable to that due to molecular diffusion. This thermal plate height is much higher than that due to radial temperature gradients alone. The analytical model explains successfully the phenomena observed in previous experiments.     

Numerical analysis of the thermal effect on electroosmotic flow and electrokinetic mass transport in microchannels

Joule heating is present in electrokinetically driven flow and mass transport in microfluidic systems. Nowadays, there is a trend of replacing costly glass-based microfluidic systems by the disposable, cheap polymer-based microfluidic systems. Due to poor thermal conductivity of polymer materials, the thermal management of the polymer-based microfluidic systems may become a problem. In this study, numerical analysis is presented for transient temperature development due to Joule heating and its effect on the electroosmotic flow (EOF) and mass species transport in microchannels. The proposed model includes the coupling Poisson-Boltzmann (P-B) equation, the modified Navier-Stokes (N-S) equations, the conjugate energy equation, and the mass species transport equation. The results show that the time development for both the electroosmotic flow field and the Joule heating induced temperature field are less than 1 s. The Joule heating induced temperature field is strongly dependent on channel size, electrolyte concentration, and applied electric field strength. The simulations reveal that the presence of the Joule heating can result in significantly different characteristics of the electroosmotic flow and electrokinetic mass transport in microchannels.     

Temperature effects in capillary electrophoresis. 1: Internal capillary temperature and effect upon performance

Summary In isothermal CE the migration velocity of analytes and the number of theoretical plates delivered are expected to be proportional to the field strength. In reality ohmic heating of the capillary causes distortions: the migration velocity increases more rapidly while the plate count increases less rapidly, and may even fall at high values of the field. These distortions are worse the larger the bore of the capillary and the higher the concentration of buffer. A detailed investigation of these effects using capillaries cooled by natural convection has confirmed that self heating of the capillary is indeed largely responsible. The extent of self heating has been determined by three independent methods and to a first approximation is proportional to the power dissipation in the capillary. Decreasing viscosity with temperature is responsible for the nonlinearity of the dependence of velocity upon field strength while increase in the diffusion coefficient of analytes is responsible for the poorer than expected performance at high field strengths.     

Band broadening arising from stepwise alterations in mobile phase composition in micellar electrokinetic chromatography

Summary Gradient elution in micellar electrokinetic chromatography has been proposed as a technique for extending the elution range and adjusting retention factors for optimum values. It is shown that this approach in practice has not only to be evaluated for adjustment of retention factors but also for the reduced efficiency of the chromatographic system arising from alterations in the separation buffer during the run. Stepwise gradient elution, feasible with commercial instrumentation, results in marked peak broadening attributable to effects of the border zone passing the solute zone.     

Rapid separation of acetophenone and its monohydroxy isomers by capillary electrophoresis

This work describes the development of a capillary electrophoresis(CE)method for the simultaneous separation of acetophenone(AP),2-hydroxyacetophenone(2-HAP),3-hydroxyacetophenone(3-HAP)and 4-hydroxyacetophenone(4-HAP)in synthetic mixtures using 10 mmol/L of sodium tetraborate buffer(pH 9.5).The aim of this work is to demonstrate the effectiveness of CE to separate AP and its monohydroxy isomers and to defne how the separations are affected by buffers,buffer pH,sample matrices and separation voltage.This method was successfully used for the trace level separation and determination of 2-HAP,3-HAP and 4-HAP in synthetic mixture and 4-HAP in spiked plasma samples.     

Numerical simulation of electrokinetic injection techniques in capillary electrophoresis microchips

The effective design and control of a capillary electrophoresis (CE) microchip requires a thorough understanding of the electrokinetic transport phenomena associated with its microfluidic injection system. The present study utilizes a numerical simulation approach to investigate these electrokinetic transport processes and to study the control parameters of the injection process. Injection systems with a variety of different configurations are designed and tested, including the cross-form, T-form, double-T-form, variable-volume focused flow cross-form, and variable-volume triple-T-form configuration. Each injection system cycles through a predetermined series of steps in which the magnitudes and distributions of the applied electric field are precisely manipulated in order to effectuate a virtual valve. This study investigates the sample leakage effect associated with each of the injection configurations and applies the double-L, pullback, and focusing injection techniques to minimize the sample leakage effect. The injection methods presented in this paper have the exciting potential for use in high-quality, high-throughput chemical analysis applications and throughout the micro-total-analysis systems field.     

Separation of binaphthyl enantiomers by capillary zone electrophoresis and electrokinetic chromatography

The capillary electrophoretic (CE) separation of the enantiomers of three binaphthyl compounds is investigated. Several CE modes such as cyclodextrin (CD) modified capillary zone electrophoresis (CZE) (CD-CZE), micellar electrokinetic chromatography (MEKC), cyclodextrin electrokinetic chromatography (CD-EKC), etc. are employed for the simultaneous enantiomer separation of the three solutes. The successful separation was achieved by combining two modes, in other words by using more than two chiral selectors. A development of the CE enantiomer separation is demonstrated for the binaphthyl compounds. The enantioselectivity of binaphthyl compounds is alo briefly discussed.     

The application of spline wavelet transform to the determination of electroosmotic mobility in capillary electrophoresis

The rule of current change was studied during capillary electrophoresis (CE) separation process while the conductivity of the sample solution was different from that of the buffer. Using a quadratic spline wavelet of compact support, the wavelet transforms (WTs) of capillary electrophoretic currents were performed. The time corresponding to the maximum of WT coefficients was chosen as the time of current inflection to calculate electroosmotic mobility. The proposed method was suitable for different CE modes, including capillary zone electrophoresis, nonaqueous CE and micellar electrokinetic chromatography. Compared with the neutral marker method, the relative errors of the developed method for the determination of electroosmotic mobility were all below 2.5%.