‘O-Acyl isopeptide method’ for the efficient synthesis of difficult sequence-containing peptides: use of ‘O-acyl isodipeptide unit’

A novel ‘O-acyl isodipeptide unit’, Boc-Thr(Fmoc-Val)-OH 5 has been successfully used for the efficient synthesis of a difficult sequence-containing pentapeptide based on the ‘O-acyl isopeptide method’, in which racemization-inducible esterification could be omitted, suggesting that the use of O-acyl isodipeptide units allows the application of this method to fully automated protocols for the synthesis of long peptides or proteins.     

Novel and efficient synthesis of difficult sequence-containing peptides through O-N intramolecular acyl migration reaction of O-acyl isopeptides

A novel and efficient method for the synthesis of difficult sequence-containing peptides has been developed based on the synthesis of O-acyl isopeptides followed by an O-N intramolecular acyl migration reaction, resulting in a remarkable improvement of the yields.     

Synthesis and reactivity of O-acyl selenophosphates

The synthesis of several new O-acyl selenophosphates were investigated. The stability and reactivity of the products were studied and related to their structure.     

"Click peptide" based on the "o-acyl isopeptide method": control of A beta1-42 production from a photo-triggered A beta1-42 analogue

A clear understanding of the dynamic events of amyloid beta peptide (Abeta) 1-42, such as the folding, self-assembly, and aggregation processes, would be of great significance in Alzheimer's disease (AD) research. However, elucidation of these Abeta1-42 dynamic events is a difficult issue due to uncontrolled polymerization, which also poses a significant obstacle for establishing an experimental system that clarifies the pathological function of Abeta1-42. On the basis of the O-acyl isopeptide method, we herein developed a novel photo-triggered "click peptide" of Abeta1-42, for example, 26-N-Nvoc-26-AIAbeta42, in which the photocleavable 6-nitroveratryloxycarbonyl (Nvoc) group was introduced at the alpha-amino group of Ser26 in 26-O-acyl isoAbeta1-42 (26-AIAbeta42). From the results, (1) the click peptide did not exhibit the self-assembling nature under physiological conditions due to one single modified ester; (2) photoirradiation of the click peptide and subsequent O-N intramolecular acyl migration afforded the intact Abeta1-42 with a quick and one-way conversion reaction (so-called "click"), while the click peptide was stable under nonphotolytic or storage conditions. In addition, it is advantageous that no additional fibril inhibitory auxiliaries were released during conversion to Abeta1-42. This method provides a novel system useful for investigating the dynamic biological functions of Abeta1-42 in AD by inducible activation of Abeta1-42 self-assembly.     

Reaction of O-acyl derivatives of polynitroalkanes with electrophilic reagents

Conclusions The O-acyl derivatives of polynitroalkanes (trinitromethane, dinitromethane and 1,1-dinitroethane) react with various electrophilic reagents to give the corresponding trinitro- and dinitromethyl derivatives.Translated from Izvestiya Akademiya Nauk SSSR, Seriya Khimicheskaya, No. 2, pp. 344–350, February, 1973.     

Kinetics of acyl exchange of series of N- and O-acyl salts with 4-(p-dimethylamino)styrylpyridine-N-oxide

A study has been mode of the reaction of acyl exchange between a series of N- or O-acyl salts and 4-(p-dimethylamino)styrylpyridine-N-oxide in acetonitrile solution. Values of the rate constant (k₂) and activation characteristics (E_a, G, S, and H) have been obtained for these systems.Translated from Teoreticheskaya i éksperimental'naya Khimiya, Vol. 31, No. 2, pp. 86–89, March–April, 1995.This work was performed with financial support from the State Committee of the Ukraine for Matters of Science and Technology.     

Benzenoid-quinoid tautomerism of azomethines and their structural analogs. 41. Photo- and thermochromic transformations of acylated N-alkylimines of 3-hydroxybenzo[b]thiophene-2-carbaldehyde and 3-hydroxy-1-methylindole-2-carbaldehyde

O- and N-Acylated alkylimines of 3-hydroxybenzo[b]thiophene-2-carbaldehyde and 3-hydroxy-1-methylindole-2-carbaldehyde were synthesized. Their Z E isomerizations and NO-acyl photo- and thermotransformations were investigated by means of electronic and IR spectroscopy. On irradiation N-acyl-N-methyl(or benzyl)amino-methylene derivatives of benzo[b]thiophen-3-one and 1-methylindol-3-one undergo only Z E isomerization. The introduction of bulkier alkyl substituants (isopropyl, cyclohexyl) relative to the amino nitrogen atom increases the stability of the O-acyl isomers and their conjugate acids and leads to irreversible photoinitiated or acid-catalyzed N O-acyl rearrangements. Exclusively the O-acyl isomer is realized for compounds with the most bulky N-tert-butyl substituent.See [1] for Communication 40.Translated from Khimika Geterotsiklicheskikh Soedinenii, No. 4, pp. 466–471, April, 1988.     

A novel synthesis of 4H-chromen-4-ones via intramolecular wittig reaction

The acylphosphoranes formed in a sequential manner from the reaction of the silyl ester of O-acyl(aroyl)salicylic acids and (trimethylsilyl)methylenetriphenylphosphorane undergo intramolecular Wittig cyclization on the ester carbonyl to afford the 4H-chromen-4-ones in good to excellent yields.     

4- And 5-hydroxylaminothiazolidine-2-thiones. Acylation,synthesis, and structural investigation of new 6-thioxo(oxo) derivatives of 4,5-dihydro-6H-1,2,5-thiadiazine

The treatment of 4- and 5-hydroxylaminothiazolidine-2-thiones as well as 5-hydroxylaminothiazolidin-2-one with acetic anhydride or benzoyl chloride is accompanied, as a rule, by the formation of O-acyl derivatives. The 4-(O-acyl) derivatives are thereby either stable to thermal or alkaline treatment, or are converted to 4-iminothiazolidine-2-thione; the 5-(O-acetyl)-hydroxylamines rearrange to 6-thioxo(oxo) derivatives of 4,5-dihydro-6H-1,2,5-thiadiazine.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 9, pp. 1280–1284, September, 1987.     

Enhanced Detection of Ubiquitin Isopeptides Using Reductive Methylation

Identification of ubiquitination (Ub) sites is of great interest due to the critical roles that the modification plays in cellular regulation. Current methods using mass spectrometry rely upon tryptic isopeptide diglycine tag generation followed by database searching. We present a novel approach to ubiquitin detection based upon the dimethyl labeling of isopeptide N-termini glycines. Ubiquitinated proteins were digested with trypsin and the resulting peptide mixture was derivatized using formaldehyde-D2 solution and sodium cyanoborohydride. The dimethylated peptide mixtures were next separated by liquid chromatography and analyzed on a quadrupole-TOF based mass spectrometer. Diagnostic b2′ and a1′ ions released from the isopeptide N-terminus upon collision-induced dissociation (CID) were used to spectrally improve the identification of ubiquitinated isopeptides. Proof of principle was established by application to a ubiquitinated protein tryptic digest spiked into a six-protein mix digest background. Extracted ion chromatograms of the a1′ and b2′ diagnostic product ions from the diglycine tag resulted in a significant reduction in signal complexity and demonstrated a selectivity towards the identification of diglycine branched isopeptides. The method was further shown to be capable of identifying diglycine isopeptides resulting from in-gel tryptic digests of ubiquitin enriched material from a His-Ub transfected cell line. We envisage that these ions may be utilized in global ubiquitination studies with post-acquisition MS/MS (or MSe) data interrogation on high resolution hybrid mass spectrometers.

‘O-Acyl isopeptide method’: racemization-free segment condensation in solid phase peptide synthesis

We disclosed a novel ‘racemization-free segment condensation’ based on the ‘O-acyl isopeptide method’ in which an N-segment including C-terminal O-acyl isopeptide structure with urethane-protected Ser/Thr residue was employed for the segment condensation, suggesting that the use of this method contributes to the effective convergent synthesis of long peptides/proteins.     

Short and practical synthesis of O-(p-biphenoyl)-N-tosyl-allo-threonine-derived oxazaborolidinone catalyst

O-(p-Biphenoyl)-N-tosyl-(L)-allo-threonine methyl ester is synthesized in three steps (65% overall yield) starting from commercially available (L)-allo-threonine methyl ester hydrochloride by N-acylation followed by N,O-acyl migration with inversion of the beta carbinol carbon and N-tosylation. Treatment of the methyl ester with dibromophenylborane gives oxazaborolidinone 1, which can be used as a Lewis acid catalyst for the asymmetric Michael and Diels-Alder reactions.     

N-->O-Acyl shift in Fmoc-based synthesis of phosphopeptides

Synthetic phosphopeptides are frequently used as chemical probes to explore protein-protein interactions involved in cellular signal transduction. Most commonly, the solid-phase synthesis of phosphotyrosine-containing peptides is performed by applying the Fmoc-strategy and N-Fmoc-protected tyrosine derivatives bearing acid-labile phospho protecting groups. We observed a side-reaction, the isomerisation at threonine, which furnishes depsipeptides. It is shown that the rate of N-->O-acyl migration depends on the sequence context. Depsipeptides were formed most rapidly when the phosphotyrosine was located in the +2 position. Furthermore, different phosphotyrosine building blocks were compared and a suitable method that provides phosphopeptides in enhanced purity and yield is suggested.     

Acid-sensitive auxiliary assisted atypical diubiquitin synthesis exploiting thiol-ene coupling

Atypical ubiquitin (Ub) chains are generally involved in intracellular physiological processes, while the molecular mechanisms underlying their regulation remain unclear. In this work, we report an acid-sensitive auxiliary group based bifunctional handle that can prepare Lys27-, Lys29- and Lys33-diUb analogs by thiol-ene coupling (TEC) in combination with native chemical ligation (NCL). A prominent advantage of this method is the rapid and effective removal of acid-sensitive auxiliary groups after the formation of the isopeptide bond mimic. Collectively, this work illustrates the utility of the new strategy in the simple and efficient production of homogeneous atypical diUb analogs for biochemical and biophysical studies.     

A combined mechanistic and computational study of the gold(I)-catalyzed formation of substituted indenes

Substituted indenes can be prepared after a sequence [1,3] O-acyl shift-hydroarylation-[1,3] O-acyl shift. Each step is catalyzed by a cationic NHC-Gold(I) species generated in situ after reaction between [(IPr)AuOH] and HBF(4)·OEt(2). This interesting silver-free way is fully supported by a computational study justifying the formation of each intermediate.     

Click synthesis of ubiquitin dimer analogs to interrogate linkage-specific UBA domain binding

A new route to the synthesis of triazole-linked ubiquitin dimers (diUbs) as structural analogs of the seven diUbs is reported. Binding studies with the Lys48-specific UBA domain of the Mud1 protein suggest that they represent functionally suitable surrogates of their native counterparts linked by an isopeptide bond.     

Synthesis of the sphingolipid activator protein, saposin C, using an azido-protected O-acyl isopeptide as an aggregation-disrupting element

In order to achieve an efficient synthesis of highly hydrophobic proteins by the native chemical ligation (NCL) reaction, we examined to incorporate the O-acyl isopeptide method, which is known to improve the solubility of the segment, to the NCL reaction: a peptide thioester having O-acyl isopeptide structures is prepared by the Boc mode solid-phase method using an azido group as a protecting group for the isopeptide site, and then ligated with C-terminal segment with an in situ reduction of the azido group followed by an O- to N-acyl shift. This method was successfully applied to the synthesis of the sphingolipid activator protein, saposin C.     

4-Alkoxy-2-hydroxybenzaldehyde (AHB): a versatile aldehyde linker for solid-phase synthesis of C-terminal modified peptides and peptidomimetics

[reaction: see text] A new and versatile 4-alkoxy-2-hydroxybenzaldehyde (AHB) linker for solid-phase syntheses is described. Acylation of the polymer-bound secondary amine obtained from reductive amination of the aldehyde in the AHB linker showed good reactivity. Following acylation of the phenolic hydroxyl group, the resulting carboxamide resin was stable to treatment with 95% TFA. The O-acyl functional group was removed with 20% piperidine and the desired compound was cleaved from the resin by TFA treatment.     

Solid-phase synthesis of asymmetrically substituted "AB3-type" phthalocyanines

Synthesis of phthalocyanines with asymmetrical substitution on the periphery is often difficult due the problems in purification of the phthalocyanine mixtures obtained. Using a poly(ethylene glycol) (PEG)-based support with a Wang-type linker, we have developed the synthesis of monohydroxylated, oligoethylene glycol substituted phthalocyanines utilizing an amidine-base-promoted phthalonitrile tetramerization reaction. The use of a hydrophilic support allows symmetrical phthalocyanine product formed in solution to be readily and completely removed by washing while leaving the "AB3" product on the support. Acid cleavage with 10% trifluoroacetic acid provides the pure unsymmetrically substituted Pc. This method was applied to several metallo Pcs. Additionally, methods to avoid premature reactions on-resin that give A2B2 products are provided.     

Copper-catalyzed electrophilic amination of diorganozinc reagents

The copper-catalyzed electrophilic amination of diorganozinc reagents employing O-acyl N,N-dialkyl hydroxylamine derivatives as aminating agents is described. This reaction offers a general method for the preparation of tertiary amines in high yields and is noteworthy for its convenience both in terms of reaction conditions employed (room temperature, 相似文献