Molecular structure and conformational preferences of 1-bromo-1-silacyclohexane, CH2(CH2CH2)2SiH-Br, as studies by gas-phase electron diffraction and quantum chemistry

The molecular structure of axial and equatorial conformer of the 1-bromo-1-silacyclohexane molecule, CH₂(CH₂CH₂)₂SiH-Br, as well as thermodynamic equilibrium between these species are investigated by means of gas-phase electron diffraction and quantum chemistry on the MP2(full)/SDB-AUG-cc-PVTZ level of theory. It is revealed that according to electron diffraction data, the compound exists in the gasphase as a mixture of conformers possessing the chair conformation of the six-membered ring and C _s symmetry and differing in the axial and equatorial position of the Si-Br bond (ax. = 80(5) mol %, eq. = 20(7) mol %) at 352 K, that corresponds to the value of A = (G _ax ^?? ? G _eq ^?? ) = ?0.82(32) kcal/mol. It is found that observed data agree well with theoretical ones. Using Natural Bond Orbital (NBO) analysis it is revealed that axial conformer of 1-bromo-1-silacyclohexane molecule is an example of the stabilization of the form that is unfavorable from the point of view of steric effects and effects of conjugations. It is concluded that stabilization is achieved due to electrostatic interactions.     

Conformational preferences of fluorocyclohexane and 1-fluoro-1-silacyclohexane molecules: ab initio study and NBO analysis

The molecular structure of the axial and equatorial conformers of fluorocyclohexane and 1-fluoro-1-silacyclohexane, H₂C(CH₂CH₂)₂XH–F (X = C or Si), as well as the thermodynamic equilibrium between these species were investigated by means of quantum chemical calculations up to MP2/aug-cc-pVTZ level of theory. According to MP2 data, these compounds consist of a mixture of conformers with chair conformation and C _s symmetry differing in the axial and equatorial position of the C–F/Si–F bonds (axial = 42/56 mol%, equatorial = 58/44 mol%) at T = 298 K. This corresponds to a free energy difference of A = (G _ax ? G _eq) = 0.19/?0.13 kcal mol^?1 for X = C/Si. NBO analysis revealed that the axial conformer of 1-fluoro-1-silacyclohexane is an example of stabilization of the form that is unfavorable in terms of conjugation effects; stabilization is achieved mainly due to steric interactions. The equatorial conformer of fluorocyclohexane is an example of stabilization of the form that is unfavorable in terms of electrostatic interactions; stabilization is achieved due to steric and conjugation effects.     

Radical–molecule reaction CH<Subscript>2</Subscript>Cl + NO<Subscript>2</Subscript>: a mechanistic study

The radical–molecule reaction mechanism of CH₂Cl with NO₂ has been explored theoretically at the B3LYP/6–311G(d,p) and MC–QCISD (single-point) levels of theory. Our results indicate that the title reaction proceeds mostly through singlet pathways, less go through triplet pathways. The initial association between CH₂Cl and NO₂ is found to be the carbon-to-nitrogen attack forming the adduct a H₂ClCNO₂ with no barrier, followed by isomerization to b ₁ H₂ClCONO-trans which can easily convert to b ₂ H₂ClCONO-cis. Subsequently, the most feasible pathway is the C–Cl and O–N bonds cleavage along with the N–Cl bond formation of b (b ₁ , b ₂ ) leading to product P ₁ CH₂O + ClNO, which can further dissociate to give P ₅ CH₂O + Cl + NO. The second competitive pathway is the 1,3-H-shift associated with O–N bond rupture of b ₁ to form P ₂ CHClO + HNO. Because the intermediates and transition states involved in the above two favorable channels all lie below the reactants, the CH₂Cl+NO₂ reaction is expected to be rapid, as is confirmed by experiment. The present results can lead us to understand deeply the mechanism of the title reaction and may be helpful for further experimental investigation of the reaction.     

The structures and stability of pentacoordinate germylenoid PhCH<Subscript>2</Subscript>(OH)CH<Subscript>3</Subscript>GeLiF

The structures and stability of pentacoordinate germylenoid PhCH₂(OH)CH₃GeLiF were first theoretically studied by density functional theory. Two equilibrium structures, the three-membered ring (1a) and the p-complex (1b) structures, were located. Their energy are in the order of 1b > 1a. The Ge-O coordination energies at the B3LYP/6-311+G(d, p) level are 13.6 and 0.2 kJ/mol in 1a and 1b, respectively. The insertion reactions with CH₃F indicate that germylenoid PhCH₂(OH)CH₃GeLiF is more stable than germylene PhCH₂(OH)CH₃Ge. The insertion barrier of 1a with CH₃F is only 3.1 kJ/mol higher than that of PhCH₃CH₃GeLiF, indicating that the oxygen coordination PhCH₂(OH)CH₃GeLiF has the same stability as PhCH₃CH₃GeLiF.     

Observation of zwitterion formation in the gas-phase H/D-exchange with CH<Subscript>3</Subscript>OD: Solution-phase structures in the gas phase

Infrared spectroscopy of gas-phase singly deuterated [Trp+K]⁺ (formed by H/D exchange with CH₃OD) shows that some (∼20%) kinetically stable zwitterionic (ZW) conformer is formed, based on the diagnostic antisymmetric CO stretch of the deprotonated carboxylate moiety, υ_as(CO₂⁻), at 1680 cm⁻¹. A majority of the deuterated [Trp+K]⁺ is found to be in the charge solvation (CS) conformation, with deuterium exchange occurring on both the acid and amino groups, which is consistent with H/D scrambling. Interestingly, H/D exchange with the more basic ND₃ reagent did not result in the stabilization of a kinetically stable zwitterion, although it is not clear yet what causes this observation. The result for CH₃OD shows that H/D exchange can in fact alter the structure of the analyte and, hence, care needs to be taken when interpreting gas-phase H/D exchange studies. Moreover, this result shows the possibility of forming solution-phase structures that are thermodynamically disfavored in the gas phase, thus opening a new area of study.     

Standard molar enthalpy of formation of CH<Subscript>3</Subscript>(CH<Subscript>3</Subscript>SCH<Subscript>2</Subscript>)SO,methyl methylthiomethyl sulfoxide

Summary The standard molar enthalpy of formation of methyl methylthiomethyl sulfoxide, CH₃(CH₃SCH₂)SO, at T=298.15 K in the liquid state was determined to be -199.4±1.5 kJ mol^-1 by means of oxygen rotating-bomb combustion calorimetry.     

Theoretical study on the reaction mechanism of the OH-initiated oxidation of CH<Subscript>2</Subscript>=C(CH<Subscript>3</Subscript>)CH<Subscript>2</Subscript>CH<Subscript>2</Subscript>OH

In the present work, the detailed reaction mechanism and possible products of the OH-initiated oxidation of CH₂=C(CH₃)CH₂CH₂OH (MBO331) have been revealed theoretically for the first time. The potential energy surfaces of various reaction channels both in the absence and presence of O₂ and NO are evaluated at the CCSD(T)/6−31++G(d,p)//MP2(full)/6−311G(d,p)+ZPE*0.95 level. The major products of HCHO + CH₃C(O)CH₂CH₂OH predicted for the title reaction in the presence of O₂ and NO are in agreement with those of similar reactions of unsaturated alcohols with OH radical.     

Computational study on the reaction of CH<Subscript>3</Subscript>SCH<Subscript>2</Subscript>CH<Subscript>3</Subscript> with OH radical: mechanism and enthalpy of formation

The reaction mechanism of CH₃SCH₂CH₃ with OH radical is studied at the CCSD(T)/6-311+G(3df,p)//MP2/6-31+G(2d,p) level of theory. Three hydrogen abstraction channels, one substitution process and five addition–elimination channels are identified in the title reaction. The result shows hydrogen abstraction is dominant. Substitution process and addition–elimination reactions may be negligible because of the high barrier heights. Enthalpies of formation [ \Updelta_f H_{(298.15\textK)}^o \Updelta_{f} H_{(298.15{\text{K}})}^{o} ] of the reactants and products are evaluated at the CBS-QB3, G3 and G3MP2 levels of theory, respectively. It is found that the calculated enthalpies of formation by the aforementioned three methods are in consistent with the available experimental data. Rate constants and branching ratios are estimated by means of the conventional transition state theory with the Wigner tunneling correction over the temperature range of 200–900 K. The calculation shows that the formations of P1 (CH₂SCH₂CH₃ + H₂O) and P2 (CH₃SCHCH₃ + H₂O) are major products during 200–900 K. The three-parameter expressions for the total rate constant is fitted to be k_\texttotal = 1.45 ×10 ^{- 21} T^3.24 exp( - 1384.54/T) k_{\text{total}} = 1.45 \times 10^{ - 21} T^{3.24} \exp ( - 1384.54/T) cm³ molecule⁻¹ s⁻¹ from 200 to 900 K.     

Crystal Structure of [UO<Subscript>2</Subscript>SO<Subscript>4</Subscript>{(CH<Subscript>3</Subscript>)HNCONH(CH<Subscript>3</Subscript>)}<Subscript>2</Subscript>]

The single crystals of [UO₂SO₄{(CH₃)HNCONH(CH₃)}₂] (I) were synthesized and studied by X-ray diffraction. The crystals are monoclinic, a = 6.847(1) Å, b = 14.259(3) Å, c = 14.297(3) Å, β = 93.451(4)°, space group P2₁/n, Z = 4. The main structural units of crystals I are ribbons whose composition coincides with the composition of the compound. The crystal chemical formula of the complex is AT³M ₂ ¹ (A = UO ₂ ²⁺ ).     

Reaction of the novel Ru<Subscript>3</Subscript>(CO)<Subscript>10</Subscript>[Ph<Subscript>2</Subscript>P(CH<Subscript>2</Subscript>)<Subscript>2</Subscript>Si(OEt<Subscript>3</Subscript>)]<Subscript>2</Subscript> complex on SBA-15 and MCM-41 mesoporous silicas

The reaction of Ru₃(CO)₁₂ with 2(diphenylphosphino)ethyl-triethoxysilane (DPTS) in hydrocarbons, leads to the functionalized Ru₃(CO)_12−n [Ph₂P(CH₂)₂Si(OEt₃)] _n (n = 1,2) complexes. The complex with two phosphine substituents was chemically anchored on mesoporous silicas, SBA-15 and MCM-41, in order to obtain two hybrid materials characterized by a different localization of the metal centre on the surface of the porous supports. A detailed investigation of the cluster, before and after chemical anchoring on the mesoporous silicas, was pursued. Particular attention was also devoted to the study of the morphological, structural and textural properties of the metal-functionalised silicas (Ru/SBA-15 and Ru/MCM-41) by infrared spectroscopy (FT-IR), scanning electron microscopy, X-ray diffraction and N₂ physisorption analysis.     

Anharmonic Effect in CH<Subscript>3</Subscript>CH<Subscript>2</Subscript>C(=O)OCH<Subscript>2</Subscript>CH<Subscript>3</Subscript> Decomposition

In this paper, using the B3LYP functional and CCSD(T) method with 6-311++G** basis set, the harmonic and anharmonic rate constants in the unimolecular dissociation of ethyl propanoate have been calculated using Rice–Ramsperger–Kassel–Marcus theory. The anharmonic rate constants of the title reaction have also been examined, the comparison shows that, the anharmonic effect especially in the case of high total energies and temperature for channels 3 to 6 is significant, so that the anharmonic effect cannot be neglected for unimolecular dissociation reaction of CH₃CH₂C(=O)OCH₂CH₃ both in microcanonical and canonical systems.     

Structure and some properties of [UO<Subscript>2</Subscript>CrO<Subscript>4</Subscript>{CH<Subscript>3</Subscript>CON(CH<Subscript>3</Subscript>)<Subscript>2</Subscript>}<Subscript>2</Subscript>]

A new complex [UO₂CrO₄{CH₃CON(CH₃)₂}₂] (I) was studied by thermal analysis, IR spectroscopy, and X-ray crystallography. The crystals are monoclinic: a = 13.8108(11) Å, b = 8.6804(7) Å, c = 13.0989(10) Å, β = 104.777(1)°, V = 1518.4(2) ų, space group P2₁/c, Z = 4, R = 2.39%. The structure of I contains infinite chains of the [UO₂CrO₄{CH₃CON(CH₃)₂}₂] composition running along [001]; the complex belongs to the AT¹¹M¹ ₂ crystal-chemical group (A = UO ₂ ²⁺ , T¹¹ = CrO ₄ ^2? , M¹ = CH₃CON(CH₃)₂) of uranyl complexes. The chains are linked into a three-dimensional framework due to hydrogen bonds between oxygen atoms of chromate ions and hydrogen atoms of methyl groups of the dimethylacetamide.     

New systems for classical nitrosohalogenation of alkenes 2. Generation of nitrosyl chloride in AgNO<Subscript>2</Subscript>-SOCl<Subscript>2</Subscript> and AgNO<Subscript>3</Subscript>-SOCl<Subscript>2</Subscript> systems

Study of the reactions of compounds of the norbornene series demonstrated that the AgNO₂-SOCl₂ and AgNO₃-SOCl₂ systems serve as nitrosochlorinating agents under the conditions of electrophilic addition. X-ray diffraction study showed that dimerization of cis-exo-2-chloro-3-nitrosobicyclo[2.2.1]heptane occurs heterostereospecifically. The origin of the active principle of the reagents is discussed. For Part 1, see Ref. 1. Dedicated to Academician N. S. Zefirov on the occasion of his 70th birthday. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 2081–2085, September, 2005.     

Quantum-chemical study of chlorophosphoranes: I. Structure of the (C<Subscript>6</Subscript>H<Subscript>5</Subscript>)<Subscript>2</Subscript>PCl<Subscript>3</Subscript> molecule in gaseous and crystalline states

The quantum-chemical calculations of the (C₆H₅)₂PCl₃ molecule were performed by the methods RHF/6-31G(d) and MP2/6-31G(d) with complete and partial optimization of its geometry. The results of calculations were used for evaluating the NQR frequencies of ³⁵Cl and the parameters of asymmetry of the of electric field gradient on the ³⁵Cl nuclei of this molecule. According to the results of calculations with the partial optimization of geometry and to the experimental data of ³⁵Cl NQR the bond lengths were found of central atom P in the solid state of this compound. The mutual influence of its axial and equatorial bonds was studied. It is shown that in chlorophosphoranes the ³⁵Cl NQR frequencies of the axial and equatorial chlorine atoms decrease with the decrease in the bond lengths of phosphorus atom.     

Hydrothermal synthesis,crystal structure and magnetic properties of a new one-dimensional polymer [{Cu(4,4′- bipy)(CH<Subscript>3</Subscript>COO)<Subscript>2</Subscript>}·3H<Subscript>2</Subscript>O]<Subscript>n</Subscript>

One new metal – organic coordination framework formulated as [{Cu(4,4′-bipy)(CH₃COO)₂}·3H₂O]_n (1) (where 4,4′-bipy=4,4′-bipyridine) has been hydrothermally synthesised and characterised by elemental analysis, IR and electronic spectroscopy, variable temperature magnetic moment measurement and single crystal X-ray diffraction study. Single crystal X-ray analysis reveals that 1 is one dimensional polymeric compound in which acetate ligand shows both mono- and bidentate bonding mode, and 4,4′-bipy acts as bridging ligand which supports the formation of infinite chains. The global feature of the χ _M T vs. T curve in 1 is characteristic of moderate antiferromagnetic interaction and the best fit parameters from 300 down to 2 K are found as J = −78.7 cm⁻¹.     

Structure of the Cu(Salen) molecule Cuo<Subscript>2</Subscript>N<Subscript>2</Subscript>C<Subscript>16</Subscript>H<Subscript>14</Subscript> according to gas-phase electron diffraction data and quantum chemical calculations

In the framework of synchronous gas-phase electron diffraction and mass spectrometry experiment, the saturated vapor of N,N′-ethylenebis(salicylaldiminate) copper(II) CuO₂N₂C₁₆H₁₄ is studied at a temperature T 574(5) K. It is found that evaporation is congruent and the saturated vapor consists of monomeric molecules. Electron diffraction data are proved to correspond to the geometric model for the CuO₂N₂C₁₆H₁₄ molecule of C ₂ symmetry with an almost planar structure of the CuN₂O₂ coordination fragment and internuclear distances \(r_{h_1 } \)(Cu-O) = 1.917(13) Å and \(r_{h_1 } \)(Cu-N) = 1.931(15) Å. The stuctural parameters obtained are compared to those quantum chemically calculated and molecular parameters in crystals.     

Theoretical studies on the pentacoordinate silylenoid PhCH<Subscript>2</Subscript>(NH<Subscript>2</Subscript>)CH<Subscript>3</Subscript>SiLiF

The structures of pentacoordinate silylenoid PhCH₂(NH₂)CH₃SiLiF were studied by density functional theory at the B3LYP/6-31G(d) level. Three equilibrium structures, the three-membered ring (1), the p-complex (2), and the σ-complex (3) structures, were located. Their energies are in the order of 2 > 1 > 3 both in vacuum and in THF. To exploit the stability of PhCH₂(NH₂)CH₃SiLiF, the insertion reactions of 1 and PhCH₂(NH₂)CH₃Si into C–F have been investigated, respectively. The results show that the insertion of PhCH₂(NH₂)CH₃Si is more favorable. To probe the influence of amine-coordination to the stability of PhCH₂(NH₂)CH₃SiLiF, the insertion reaction of PhCH₃CH₃SiLiF was also investigated. The calculations indicate that the insertion of PhCH₃CH₃SiLiF is more favorable than that of 1. So the N atom plays an important role on the stability of silylenoid PhCH₂(NH₂)CH₃SiLiF.     

Hydrolysis of coordinated aminoacetonitrile in a platinum(IV) complex. Crystal structure of [PtPy(NH<Subscript>2</Subscript>CH<Subscript>2</Subscript>COO)Cl<Subscript>3</Subscript>]

Heating of a hydrochloric acid solution of trans-PtPy(NH₂CH₂CN)Cl₄ results in the hydrolysis of coordinated aminoacetonitrile to aminoacetic acid with the formation of a five-membered chelate ring attached to platinum through the nitrogen atom of the amino group and the oxygen atom of the carboxy group. X-ray diffraction analysis of [PtPy(NH₂CH₂COO)Cl₃] is carried out. The crystals are monoclinic: space group C2/c, a = 21.704(2), b = 8.7027(7), c = 15.576(1) Å, β = 126.606(1)^o, V = 2361.8(3) ų, Z = 8; R _hkl = 0.057, wR = 0.141. In the neutral complex, the Pt atom has a distorted octahedral coordination. The equatorial plane is formed by a Cl atom (Pt-Cl, 2.284(3) Å), the N atom of the Py molecule (Pt-N, 2.062(8) Å), and the N and O atoms of the bidentate-chelating ligand (Pt-N, 2.039(8); Pt-O, 2.026(7) Å); two Cl atoms are arranged in the apical positions (Pt-Cl, 2.301(3) and 2.312(3) Å). The five-membered chelate ring has a flattened gauche conformation with an NCCO torsion angle of 19(1)°.     

Synthesis and structure of [UO<Subscript>2</Subscript>(C<Subscript>2</Subscript>O<Subscript>4</Subscript>){CONH<Subscript>2</Subscript>N(CH<Subscript>3</Subscript>)<Subscript>2</Subscript>}<Subscript>2</Subscript>]

The single crystals of [UO₂(C₂O₄){CONH₂N(CH₃)₂}₂] were synthesized and studied by X-ray diffraction. The crystals are monoclinic, a = 7.461(2) Å, b = 8.828(2) Å, c = 11.756(2) Å, β = 107.21(3)°, space group Pc, Z = 2, R = 2.94%. The structure comprises infinite chains [UO₂(C₂O₄){CONH₂N(CH₃)₂}₂] extended along [001] and corresponding to the AT¹¹M ₂ ¹ crystallochemical group (A = UO ₂ ²⁺ , T¹¹ = C₂O ₄ ^2? , M¹ = N,N-CONH₂N(CH₃)₂) of uranyl complexes. The chains are connected into a three-dimensional framework by hydrogen bonds involving the oxygen atoms of oxalate and uranyl ions and the N,N-dimethylcarbamide methyl groups.