Complete NMR analysis of oxytocin in phosphate buffer

Complete NMR analysis of oxytocin (OXT) in phosphate buffer was elucidated by one‐dimensional (1D)‐ and two‐dimensional (2D)‐NMR techniques, which involve the assignment of peptide amide NH protons and carbamoyl NH₂ protons. The ¹H? ¹⁵N correlation of seven amide NH protons and three carbamoyl NH₂ protons were also shown by HSQC NMR of OXT without ¹⁵N enrichment. Copyright © 2009 John Wiley & Sons, Ltd.     

Nature of acidic protons in metallosilicate molecular sieves as studied by variable temperature 1H MAS NMR

The dynamic properties of protons in H-[Ga]-ZSM-5, H-[B]-ZSM-5 and H-[Al-B]-ZSM-5 were compared with that of protons in H-[Al]-ZSM-5 by temperature dependence of ¹H MAS NMR in the range of 298 k and 473 K. The temperature dependence of the line width of ¹H MAS NMR reveals that protons in H-[Ga]-ZSM-5 were more mobile than those in H-[Al]-ZSM-5 at temperature as low as 373 K. The protons in H-[B]-ZSM-5 were not mobile at 473 K and fixed in the zeolite frame work as the bridging hydroxyl groups, ≡B-OH-Si≡. The thermal motion of protons in ≡Al-OH-Si≡ was suppressed by introducing B³⁺ cations into the framework of H-[Al]-ZSM-5.     

Charakterisierung der Protonen in polykristallinen Parawolframaten durch 1H‐MAS‐NMR‐Untersuchungen

Characterization of the Protons in Polycrystalline Paratungstates using ¹H MAS NMR Investigations ¹H MAS NMR experiments are used to characterize the non‐acid protons of the anions in polycrystalline paratungstates by means of the measured isotropic chemical shift values. The investigation of various hydrates of ammonium paratungstate allows a direct proof of protons in NH₄ ions and in water molecules while protons of the anions are not detectable. However, for both the potassium and the sodium paratungstates ¹H MAS NMR investigations detected the protons of water molecules and the non‐acid protons of the paratungstate anions. Additional ¹H broad‐line NMR experiments at 173 K support the interpretation of the results obtained by the ¹H MAS NMR investigations. For the NMR signal of the non‐acid protons of the paratungstate anion in the ¹H MAS NMR spectra of the potassium salt line‐splitting appears. This refers to the existence of two nonidentical positions of the protons in the crystal lattice and is in agreement with the results of the X‐ray structural analysis.     

An investigation of the hydrogen-bonding structure in bilirubin by 1H double-quantum magic-angle spinning solid-state NMR spectroscopy.

The complex hydrogen-bonding arrangement in the biologically important molecule bilirubin IXalpha is probed by using 1H double-quantum (DQ) magic-angle spinning (MAS) NMR spectroscopy. Employing fast MAS (30 kHz) and a high magnetic field (16.4 T), three low-field resonances corresponding to the different hydrogen-bonding protons are resolved in a 1H MAS NMR spectrum of bilirubin. These resonances are assigned on the basis of the proton-proton proximities identified from a two-dimensional rotor-synchronized 1H DQ MAS NMR spectrum. An analysis of 1H DQ MAS spinning-sideband patterns for the NH protons in bilirubin allows the quantitative determination of proton-proton distances and the geometry. The validity of this procedure is proven by simulated spectra for a model three-spin system, which show that the shortest distance can be determined to a very high degree of accuracy. The distance between the lactam and pyrrole NH protons in bilirubin is determined to be 0.186 +/- 0.002 nm (corresponding to a dominant dipolar coupling constant of 18.5 +/- 0.5 kHz). The analysis also yields a distance between the lactam NH and carboxylic acid OH protons of 0.230 +/- 0.008 nm (corresponding to a perturbing dipolar coupling constant of 9.9 +/- 1.0 kHz) and an H-H-H angle of 122 +/- 4 degrees. Finally, a comparison of 1H DQ MAS spinning-sideband patterns for bilirubin and its dimethyl ester reveals a significantly longer distance between the two NH protons in the latter case.     

四取代酞菁金属配合物异构体~1HNMR的表征

概述了近年来用1 HNMR表征一些四取代酞菁金属配合物异构体的研究进展情况。四取代酞菁配合物存在 4种异构体和 8种磁不等价的异吲哚基。这些磁不等价的异吲哚基对苯环上以及取代基的质子的1 HNMR谱均有所影响 ,因此可以通过测定这些质子的1 HNMR谱来确定异构体。     

M(S)2(I)2 (M=Zn,Cd) and Hg(S)3I Coordination Environment of Transition Metal Complexes – Synthesis,Spectral, and Single Crystal X‐ray Structural Investigations

Three new transition metal complexes [Zn(bipyrtds)I₂]( 1 ), [Cd(bipyrtds)I₂] ( 2 ) and [Hg(pipdtc)I]( 3 ) (where bipyrtds = bipyrrolidine thiuamdisulfide and pipdtc = piperidinecarbodithioate) were prepared by the reaction of the corresponding biscarbodithioates with iodine and were characterized by elemental analysis, IR and NMR spectra. The structures of all the three complexes were determined by single crystal X‐ray crystallography. Compounds 1 and 2 contain four coordinated metal atoms and both Zn^II and Cd^II complexes are isostrucutral. Interestingly, complex 3 was found to contain effectively four coordinated mercury atom as a dimer with a relatively long Hg‐S (3.084Å) bond. The IR studies are in keeping with the observed thioureide distances. ¹H NMR spectra of 1 and 2 show clear differences in environments of α‐ and β‐CH₂ protons. However, in 1 a broad signal was observed at 4.02 ppm for α‐protons and a multiplet at 2.10 for β‐protons. For 2 , two triplets appeared at 4.26 and 4.03 ppm for α‐protons and two quintets appeared in the range of 2.18 and 2.28 ppm for β‐protons. Complex 3 gave three sets of signals. Variation of stereochemical environment with respect to α and β protons of the rings is very clearly observed in the NMR spectra.     

Why 1-NH and 3-NH protons of D-biotin exhibit different activities in aqueous solution

Quantum chemical calculations, combined with the molecular dynamics results, have been employed to explain why the 1- and 3-NH protons of biotin exhibit different activities in aqueous solution. They suggested that the relative proportion of the three different conformations of biotin in the solution was responsible for different activities of the two amide protons of biotin. The relative activity of the two amide protons calculated by theoretical work here is 6, which is in good agreement with the experimental data, which is 5, reinforcing the viewpoint that biotin jumps between the three conformations in aqueous solution and the relative proportion of extended, semifolded, and folded biotin in water is 24:3.6:1. The method for computing the relative activity of the two amide protons of biotin in water here may be used to predict the relative activity in other solutions. The behavior of biotin in aqueous solution may be helpful for better understanding the unusual strong biotin-(strept)avidin binding.     

A new NMR method for determining the particle thickness in nanocomposites, using T2,H-selective X{1H} recoupling

A new nuclear magnetic resonance approach for characterizing the thickness of phosphate, silicate, carbonate, and other nanoparticles in organic-inorganic nanocomposites is presented. The particle thickness is probed using the strongly distant-dependent dipolar couplings between the abundant protons in the organic phase and X nuclei (31P, 29Si, 13C, 27Al, 23Na, etc.) in the inorganic phase. This approach requires pulse sequences with heteronuclear dephasing only by the polymer or surface protons that experience strong homonuclear interactions, but not by dispersed OH or water protons in the inorganic phase, which have long transverse relaxation times T2,H. This goal is achieved by heteronuclear recoupling with dephasing by strong homonuclear interactions of protons (HARDSHIP). The pulse sequence alternates heteronuclear recoupling for approximately 0.15 ms with periods of homonuclear dipolar dephasing that are flanked by canceling 90 degrees pulses. The heteronuclear evolution of the long-T2,H protons is refocused within two recoupling periods, so that 1H spin diffusion cannot significantly dephase these coherences. For the short-T2,H protons of a relatively immobile organic matrix, the heteronuclear dephasing rate depends simply on the heteronuclear second moment. Homonuclear interactions do not affect the dephasing, even though no homonuclear decoupling is applied, because long-range 1H-X dipolar couplings approximately commute with short-range 1H-1H couplings, and heteronuclear recoupling periods are relatively short. This is shown in a detailed analysis based on interaction representations. The algorithm for simulating the dephasing data is described. The new method is demonstrated on a clay-polymer nanocomposite, diamond nanocrystals with protonated surfaces, and the bioapatite-collagen nanocomposite in bone, as well as pure clay and hydroxyapatite. The diameters of the nanoparticles in these materials range between 1 and 5 nm. Simulations show that spherical particles of up to 10 nm diameter can be characterized quite easily.     

NMR study of molecular complexes of 1-, 2- and 3-substituted indole donors with polynitroaromatic acceptors2

The stability of electron donor-acceptor complexes formed, in CDCl₃ solutions, between differently-substituted indoles (1-, 2- and 3-Me, Et, i.Pr, t.Bu, OMe, SMe, COOEt) and 1,3,5-trinitrobenzene, 1,3-dinitroben-zene and their derivatives was investigated by NMR of the acceptor's protons. From magnetically non-equivalent protons of the acceptor, different association constants K for one complex formation could be measured in many cases, but only aromatic protons led to reliable' K values.     

Donor-Acceptor Complexes in Copolymerization. IV. Alternating Tendency in Free Radical Copolymerization. NMR Analyses of Alternating and Random Copolymers

An NMR investigation was carried out on variable composition, random and equimolar, alternating copolymers of acrylonitrile (A) with styrene (S), isoprene (I), and butadiene (B). The NMR spectra of the SA copolymers contained peaks at 3 τ (aromatic ring protons), 7.2-7.5 τ (CH protons of A), and 8.1 -8.5 τ (CH and CH₂ protons of S and CH₂ protons of A). All NM R peaks of the alternating SA copolymer were shifted to the higher field due to the shielding effect of S. The NMR spectra of the IA copolymers contained peaks at 4.72-4.91 τ (?CH protons of I), 7.27-7.4 τ (CH protons of A), 7.71-7.93 τ (CH₂ protons of I), and 8.35 τ (CH₃ protons of I and CH₂ protons of A). The peaks at 4.72 τ (?CH) and 7.72 τ (CH₂) were assigned to I in the I-A diad and the peaks at 4.91 τ (?CH) and 7.93 τ (CH₂) were assigned to I in the I-I diad. The NMR spectra of the BA copolymers contained peaks at 4.4-4.6 τ (?CH protons of B), 7.2-7.5 τ (CH protons of A), 7.71-7.97 T (CH₂ protons of B), and 8.0-8.4 τ (CH₂ protons of A). The peaks at 4.42 τ (?CH) and 7.71 τ (CH₂) were assigned to B in the B-A diad and the peaks at 4.6 τ (?CH) and 7.9 τ(CH₂) were assigned to B in the B-B diad. The alternating structure of the copolymers prepared through metal halide-activated complexes was confirmed by NMR analysis. The random copolymers prepared by free radical initiation contain a high concentration of alternating sequences, as anticipated from the values of r₁ and r₂ where r₁(S, I, and B) is 6-10 times higher than r₂ (A).     

Molecular modeling (MM2 and PM3) and experimental (NMR and thermal analysis) studies on the inclusion complex of salbutamol and beta-cyclodextrin

The inclusion complex of salbutamol and beta-cyclodextrin (beta-CD) is studied by computational (MM2 and PM3) and experimental techniques. Molecular modeling calculations predict two different orientations of salbutamol in the beta-CD cavity in vacuo and in aqueous solution. In vacuo calculations show that the introduction of the aromatic ring of salbutamol is preferred to the introduction of the tert-butyl group into the beta-CD cavity. However, in aqueous solution both computational methods predict the introduction of the alkyl chain instead of the aromatic ring in the beta-CD cavity contrary to experimental results published previously. These quantitative predictions were experimentally confirmed here by studying the inclusion complex in solution by NMR. A 1:1 stoichiometry was found by (1)H NMR studies for this complex. A 2D ROESY (rotating-frame Overhauser enhancement spectroscopy) experiment shows that there are no cross-peaks between the aromatic protons of salbutamol and any of the protons of beta-CD. Cross-peaks for the protons of the tert-butyl group and protons inside the cavity of beta-CD demonstrate the full involvement of this group in the complexation process and confirm the orientation of the complex predicted by molecular modeling. The solid-state complex was prepared and its stoichiometry (beta-CD.C(13)H(21)NO(3).8H(2)O) and dissociation process studied by thermogravimetric analysis.     

Computational and NMR analyses for the identification of bound water molecules in ribonuclease T1.

A structural characterization of bound water molecules in ribonuclease T1 (RNase T1) was carried out by nuclear magnetic resonance spectroscopy and molecular dynamics simulation. Amide protons of residues Trp59, Leu62, Tyr68 and Phe100 were found to cross-relax with protons of bound waters. Molecular dynamics simulations of the 120 water molecules observed in the free form of the crystal structure indicate that these amide protons donate hydrogen bonds to the less mobile water molecules. Hydrogen-bonded chains of the water molecules that are identified in the simulation study are located in the hairpin-like loop of RNase T1, comprising residues 62 to 76. The temperature factors of the observed water molecules in the crystal structure are very low, indicating that these bound waters are intrinsic components of RNase T1.     

1H NMR spectra part 31: 1H chemical shifts of amides in DMSO solvent

The ¹H chemical shifts of 48 amides in DMSO solvent are assigned and presented. The solvent shifts Δδ (DMSO‐CDCl₃) are large (1–2 ppm) for the NH protons but smaller and negative (?0.1 to ?0.2 ppm) for close range protons. A selection of the observed solvent shifts is compared with calculated shifts from the present model and from GIAO calculations. Those for the NH protons agree with both calculations, but other solvent shifts such as Δδ(CHO) are not well reproduced by the GIAO calculations. The ¹H chemical shifts of the amides in DMSO were analysed using a functional approach for near ( ≤ 3 bonds removed) protons and the electric field, magnetic anisotropy and steric effect of the amide group for more distant protons. The chemical shifts of the NH protons of acetanilide and benzamide vary linearly with the π density on the αN and βC atoms, respectively. The C=O anisotropy and steric effect are in general little changed from the values in CDCl₃. The effects of substituents F, Cl, Me on the NH proton shifts are reproduced. The electric field coefficient for the protons in DMSO is 90% of that in CDCl₃. There is no steric effect of the C=O oxygen on the NH proton in an NH…O=C hydrogen bond. The observed deshielding is due to the electric field effect. The calculated chemical shifts agree well with the observed shifts (RMS error of 0.106 ppm for the data set of 257 entries). Copyright © 2014 John Wiley & Sons, Ltd.     

Complexation and self-association of methyl aryl ethers

Previous evidence for complexation between 1-methoxynaphthalene and n-butyllithium involving changes in the chemical shift of the ether protons has been shown to be the result of solvent effects on a self-association of the ether. The characteristics of this association have been determined. Evidence for a complex and its stoichiometry has been obtained by observation of the n-butyllithium protons.     

Complete 1H and 13C NMR assignment of trans,trans-2,3-divinylfuran derivatives

1H and 13C NMR spectra of trans, trans-2,3-divinylfuran derivatives (1-4) in CDCl3 were fully assigned using one- and two-dimensional NMR techniques. The 1H NMR resonances of ethylenic protons in position 2 with regard to the corresponding protons in position 3 of the furan ring are discussed.     

Analysis of the 1H NMR spectrum of α-tetralone

An analysis of both the aromatic and aliphatic portions of the ¹H NMR spectrum of α-tetralone has been carried out. Two deuterated derivatives, 2,2-dideuterio- and 4,4-dideuterio-α-tetralone, were prepared to facilitate unambiguous assignment of chemical shifts for the aliphatic protons. The conformation of the 6-membered alicyclic ring of the molecule is defined by the coupling constants among the aliphatic protons. Benzylic coupling was the only detectable long range interaction between the aliphatic and aromatic protons of the molecule. The magnitude and sign of these coupling constants agree with previous calculations of Wasylishen and Schaefer.     

Coulometric generation of H+ ions by oxidation of thiols at a platinum anode and by oxidation of mercury in acetic acid—acetic anhydride

The coulometric generation of hydrogen ions by anodic oxidation of propane-1-thiol, butane-1-thiol, 2-mercaptopropionic acid, heptane-1-thiol, 2-mercaptoethanol, methyl and ethyl thioglycollate and p-thiocresol in acetic acid—acetic anhydride (1 + 6 v/v) is described, together with the possibility of coulometric generation of protons by mercury oxidation in the presence of p-thiocresol in the same solvent system.Current-potential curves for the solvent, indicator, titrated bases, mercury and the investigated thiols showed that in acetic acid—acetic anhydride (5 + 95, v/v), mercury and the investigated thiols are oxidized at potentials which are much more negative than those of the titrated bases and other components present in the solution.Titration of potassium hydrogenphthalate and sodium acetate with protons generated by the oxidation of thiols, and of sodium acetate, lithium acetate and pyridine with protons generated by the oxidation of mercury, demonstrated that the oxidation of both thiols and mercury proceeds quantitatively with 100% current efficiency.     

Observation of delocalized states of the proton in carboxylic acid dimers in condensed matter

We report fluorescence line-narrowing experiments on low-temperature molecular crystals composed of hydrogen bonded dimers of benzoic acid. The results indicate that the acid protons are distinctly delocalized in nearly symmetric double-well potentials. The tunneling frequency is 4.8 × 10⁹ s⁻¹, a quantity not previously measured for acid protons. This is the first observation of delocalized protons of acid dimers in the condensed phase.     

Interaction between PEO-PPO-PEO copolymers and a hexapeptide in aqueous solutions

Interaction between PEO-PPO-PEO copolymers and a hexapeptide, growth hormone releasing peptide-6 (GHRP-6), was investigated by NMR to study the potential use of the copolymers in peptide drug delivery. (1)H NMR and nuclear Overhauser effect spectroscopy (NOESY) measurements determined that PO methyl protons interacted with methyl protons of the Ala moiety, aromatic protons of the Trp moiety, and some of the Phe aromatic protons. The Lys moiety and part of the Phe moiety entered the hydrophilic EO environment via hydrogen bonding. PEO-PPO-PEO copolymers and the peptide formed a complex in 1:1 stoichiometry. Binding constants between copolymers and GHRP-6 were determined, and it was indicated that the copolymers containing more EO and PO units will lead to greater affinity with the peptide. Isothermal titration calorimetry (ITC) measurements confirmed the results of NMR experiments. This study indicates that PEO-PPO-PEO copolymers have great potential in delivering peptide drugs.