Fluorine Substitution Effects on Flexibility and Tunneling Pathways: The Rotational Spectrum of 2‐Fluorobenzylamine

The effect of ring fluorination on the structural and dynamical properties of the flexible model molecule 2‐fluorobenzylamine has been studied by rotational spectroscopy in free‐jet expansion and quantum chemical methods. The complete potential energy surface originating from the flexibility of the aminic side chain has been calculated at the B3LYP/6‐311++G** level of theory and the stable geometries were also characterized with MP2/6‐311++G**. The rotational spectra show the presence of two of the predicted four stable conformers: the global minimum (I), in which the side chain’s dihedral angle with the phenyl plane is almost perpendicular, is stabilized by an intramolecular hydrogen bond between the fluorine atom and one hydrogen of the aminic group; and a second conformer II (E_II?E_I≈5 kJ mol^?1) in which the dihedral angle is smaller and the amino group points towards the aromatic ortho hydrogen atom. This conformation is characterized by a tunneling motion between two equivalent positions of the amino group with respect to the phenyl plane, which splits the rotational transition. The ortho fluorination increases, with respect to benzylamine, the tunneling splitting of this motion by four orders of magnitude. The motion is analyzed with a one‐dimensional flexible model, which allows estimation of the energy barrier for the transition state as approximately 8.0 kJ mol^?1.     

He I photoelectron spectroscopy and theoretical investigation on diaceto disulfide, CH3C(O)OSSOC(O)CH3

A novel species, diaceto disulfide (CH3C(O)OSSOC(O)CH3), has been generated through the heterogeneous reaction between sulfur monochloride (S2Cl2) and silver acetate (AgOC(O)CH3). Photoelectron spectroscopy (PES) and theoretical calculations are performed to investigate its electronic and geometric structures. This molecule exhibits gauche conformation with both C=O groups syn to the S-O bond. The dihedral angle around the S-S bond is calculated to be -93.1 degrees at the B3LYP/6-311++G(3df,3pd) level. After structural optimizations of the most stable conformer, a theoretical study involving the calculation of the ionization energies using orbital valence Green's functional (OVGF) was performed. The ionization energies of different bands in the photoelectron spectrum are in good agreement with the calculated values from the OVGF method. The first vertical ionization energy of CH3C(O)OSSOC(O)CH3 is determined to be 9.83 eV by photoelectron spectroscopy, which corresponds to the ionization of an electron mainly localized on the sulfur 3p lone pair molecular orbital.     

Synthesis and vibrational study of platinum(II) and palladium(II) complexes of glyoxilic acid oxime

New platinum(II) and palladium(II) complexes of glyoxilic acid oxime (gao) have been prepared and characterised by infrared (4000–150 cm⁻¹) and Raman (4000–200 cm⁻¹) spectra. The gao acts as bidentate ligand bonding through the oxime nitrogen and carboxyl oxygen atoms to form neutral bis-chelate square-planar complexes. The lowest energy conformer of the gao ligand (ectt) was selected among 16 theoretically possible conformers on the basis of ab initio calculations at HF/3-21G*, HF/6-31G* and HF/6-311** levels of the theory from which structural parameters and conformational stabilities have been obtained. A complete vibrational assignment of the gao was performed for the lowest energy ectt conformer on the basis of ab initio optimised parameters and normal coordinate analysis calculations (PED). NCA calculations of the complexes studied were also performed.     

Quantum chemical and experimental studies on the structure and vibrational spectra of substituted 2-pyranones

A systematic study on the structural characteristics of the 2-pyranone ring containing molecules with bromine, nitrile, and amide substituents at the C-3 position in the ring is conducted in the electronic ground (S ₀) state by DFT calculations using the B3LYP/6-311++G** method. The geometrical structure of the bromine substituted compound, which shows potent hepatoprotective activity, is studied both in the ground (S ₀) and first excited singlet (S ₁) states using RHF/6-311++G** and CIS/6-311++G** methods respectively. The molecules are found to exist in two isomeric forms gauche and trans that have the enthalpy difference of less than 3.32 kcal/mol; the latter is the preferred orientation in the gaseous phase. The S ₁ state is a ¹(π,π*) state that arises π-electron transfer from the region of a double bond in the pyranone ring to the region of the internuclear bond connecting the 2-pyranone and benzene rings. A complete vibrational analysis is conducted for the 3-bromo-6-(4-chlorophenyl)-4-thiomethyl-2H-pyran-2-one molecule based on the experimental infrared spectra in the 50–4000 cm⁻¹ region and DFT/6- 311++G** computations of vibrational frequencies for the gauche and trans isomeric forms. Spectral assignments based on the potential energy distribution along the internal coordinates confirm the nonplanar structure of the molecule.     

Study of the temperature‐dependent conformational averaging of 1H NMR resonances in vinylcyclopropane through the use of ab initio methodology and Boltzmann statistics

The temperature dependence of the ¹ H NMR resonance of the C‐4 olefinic proton in vinylcyclopropane was investigated through a combination of ab initio calculations and Boltzmann statistics. A torsional energy profile as a function of the 〈?〉 dihedral angle was obtained using HF methodology with a 6–311G** basis set, while the corresponding ¹ H chemical shift profiles for the C‐4 proton were computed using the GIAO approach and either HF, DFT (B3LYP) or MP2 methods at the 6–311G** level of theory. Chemical shifts at different temperatures calculated as canonical ensemble averages in which the different ab initio ¹ H chemical shift profiles and a Boltzmann factor defined by the HF/ 6–311G** energy function are employed reproduce remarkably well the temperature dependence observed experimentally. Attempts to perform a similar study using only the GIAO‐MP2 ¹ H chemical shift profile and 〈?〉 dihedral angle trajectories obtained from molecular dynamics simulations at different temperatures failed to reproduce the experimental trends. This shortcoming was attributed to the inability of the force fields employed, Tripos 6.0 and MMFF94, to reproduce properly the three‐well torsional potential of vinylcyclopropane. The application of both methodologies to the calculation of population‐dependent chemical shifts in other systems is discussed. Copyright © 2002 John Wiley & Sons, Ltd.     

Conformers and intramolecular hydrogen bonding of the oxalic acid monomer and its anions

Density functional theory, B3LYP/6‐31G** and B3LYP/6‐311+G(2d,p), and ab initio MP2/6‐31G** calculations have been carried out to investigate the conformers, transition states, and energy barriers of the conformational processes of oxalic acid and its anions. QCISD/6‐31G** geometrical optimization is also performed in the stable forms. Its calculated energy differences between the two most stable conformers are very near to the related observed value at 7.0 kJ/mol. It is found that the structures and relative energies of oxalic acid conformers predicted by these methods show similar results, and that the conformer L1 (C_2h) with the double‐interfunctional‐groups hydrogen bonds is the most stable conformer. The magnitude of hydrogen bond energies depends on the energy differences of various optimized structures. The hydrogen bond energies will be about 32 kJ/mol for interfunctional groups, 17 kJ/mol for weak interfunctional groups, 24 kJ/mol for intra‐COOH in (COOH)₂, and 60 kJ/mol for interfunctional groups in (COOH)COO⁻¹ ion if calculated using the B3LYP/6‐311+G(2d,p) method. © 2000 John Wiley & Sons, Inc. Int J Quant Chem 76: 541–551, 2000     

Computational studies on carbohydrates: I. Density functional ab initio geometry optimization on maltose conformations

Ab initio geometry optimization was carried out on 10 selected conformations of maltose and two 2‐methoxytetrahydropyran conformations using the density functional denoted B3LYP combined with two basis sets. The 6‐31G* and 6‐311++G** basis sets make up the B3LYP/6‐31G* and B3LYP/6‐311++G** procedures. Internal coordinates were fully relaxed, and structures were gradient optimized at both levels of theory. Ten conformations were studied at the B3LYP/6‐31G* level, and five of these were continued with full gradient optimization at the B3LYP/6‐311++G** level of theory. The details of the ab initio optimized geometries are presented here, with particular attention given to the positions of the atoms around the anomeric center and the effect of the particular anomer and hydrogen bonding pattern on the maltose ring structures and relative conformational energies. The size and complexity of the hydrogen‐bonding network prevented a rigorous search of conformational space by ab initio calculations. However, using empirical force fields, low‐energy conformers of maltose were found that were subsequently gradient optimized at the two ab initio levels of theory. Three classes of conformations were studied, as defined by the clockwise or counterclockwise direction of the hydroxyl groups, or a flipped conformer in which the ψ‐dihedral is rotated by ∼180°. Different combinations of ω side‐chain rotations gave energy differences of more than 6 kcal/mol above the lowest energy structure found. The lowest energy structures bear remarkably close resemblance to the neutron and X‐ray diffraction crystal structures. © 2000 John Wiley & Sons, Inc. * J Comput Chem 21: 1204–1219, 2000     

Substituent effect on intramolecular hydrogen bonding in 2‐hydroxybenzaldehyde

The effect of some substituents on intramolecular hydrogen bonding of 5‐X‐2‐hydroxybenzaldehyde (5‐X‐2‐HBA) has been studied by B3LYP and MP2 methods using 6‐311++G** and AUG‐cc‐PVTZ basis sets. The relationship between hydrogen bond energy E_HB and electron donation (or withdrawal) of substituents has been investigated. An approximately good linear relationship has been detected between Hammett coefficients and hydrogen bond formation energy (R² = 0.98). Herein, population analysis has been performed by atoms in molecules (AIM) and natural bond orbital (NBO) methods. The results of AIM and NBO analyses are in a good agreement with calculated energy values. Furthermore, correlation between ring aromaticity and hydrogen bonding has been investigated by nucleus‐independent chemical shift (NICS) at GIAO/B3LYP/6‐311++G** level of theory. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

Novel silylphenol antioxidants by density functional theory

We have scrutinized five novel silylphenol antioxidants, including 2-silylphenol ( 1 ), 4-silylphenol ( 2 ), 2,6-disilylphenol ( 3 ), 2,4-disilylphenol ( 4 ), and 2,4,6-trisilylphenol ( 5 ), at M06/6–311++G** level of theory. To evaluate the antioxidant efficiency, the electronic effects on O─H bond dissociation energy (BDE) and vertical ionization potential (IP_v) of 1 – 5 are investigated, which are mainly governed by electronic effects. The conductor-like polarized continuum model (CPCM) is applied to measure the antioxidant capacity in the solution phase. The results show that antioxidants with the lowest BDE and IP_v values can efficiently act via hydrogen atom transfer (HAT) and single electron transfer (SET) mechanisms, respectively. The stability of resulting radicals is measured by nucleus independent chemical shift (NICS) index, natural bond orbital (NBO) analysis, and nucleophilicity (N) index. The BDE shows lower values in the gas phase with respect to water, while water exhibits lower IP_v values than gas. Structure 5 turns out as the most efficient antioxidant. The overall order of antioxidant efficiency in both gas and water phases is 5 > 2 > 3 > 4 > 1 .     

Structures and Electronic Properties of HOCl···HCOCl Complexes

B3LYP/6-311++G** and MP2/6-311++G** calculations were used to analyze the interaction between hypochlorous acid (HOCl) and formyl chloride (HCOCl). The results showed that there were four equilibrium geometries (S1, S2, S3, and S4) optimized at B3LYP/6-311++G** level, and all the equilibrium geometries were confirmed to be in stable states by analytical frequency calculations. Complexes S1 and S3 use the 5H atom of HOCl as proton donor and the terminal 1O atom of HCOCl as acceptor to form red shift hydrogen bond systems. However, the blue-shifted hydrogen bond (2C-3H···6O) coexists with 4Cl···5O interaction in structures S2. As for S4, it uses the 7Cl atom of HOCl as proton donor and the terminal 1O atom of HCOCl as acceptor to form red shift halogen bond system. Interaction energies between monomers in the four complexes corrected with basis set superposition error (BSSE) and zero-point vibrational energy (ZPVE) lie in the range from −5.05 to −14.76 kJ·mol⁻¹ at MP2/6-311++G** level. The natural bond orbital (NBO) and atoms in molecules (AIM) theories have also been applied to explain the structures and the properties of the complexes.     

Structural studies on aryl‐substituted enaminoketones and their thio analogues. Part II. Experimental and DFT calculated carbon–carbon coupling constants,nJ(CC)'s (n = 1–3)

Spin–spin carbon–carbon coupling constants across one, two and three bonds, J(CC), have been measured for a series of aryl‐substituted Z‐s‐Z‐s‐E enaminoketones and their thio analogues. As a result, a large set, altogether 178, of J(CC)s has been obtained. It consists of 82 couplings across one bond, 31 couplings across two bonds and 65 couplings across three bonds. Independently, the DFT calculations at the B3PW91/6‐311++G(d,p)//B3PW91/6‐311++G(d,p) level yielded a set of theoretical J(CC) values. A comparison of these two sets of data gave an excellent linear correlation with parameters a and b close to ideal; a = 0.9978 which is not far from unity and b = 0.22 Hz which is close to zero. The ¹J(CC) couplings determined for the crucial fragment of the molecules, i.e. ? C?C? C?O (or ? C?C? C?S), are: ¹J(C?C) ≈ 68 Hz (67 Hz) and ¹J(C? C) = 60.5 Hz (60.0 Hz). The corresponding couplings found for the Z‐s‐Z‐s‐E isomer of the parent enaminoketone, 4‐methylamino‐but‐3‐en‐2‐one are 64.1 and 59.3 Hz, respectively. The most sensitive towards substitution of the oxygen atom by sulfur are two‐bond couplings between the α‐vinylic and aromatic C_ipso carbon atoms, which attain 12 Hz in the enaminoketone derivatives and decrease to 5 Hz in their thio analogues. Copyright © 2009 John Wiley & Sons, Ltd.     

Tautomerism of monochalcogenosilanoic acids CH3Si(O)XH (X = S,Se, Te) in the gas phase and in the polar and aprotic solution: An ab initio computational investigation

Computational investigations by an ab initio molecular orbital method (HF and MP2) with the 6‐311+G(d,p) and 6‐311++G(2df, 2pd) basis sets on the tautomerism of three monochalcogenosilanoic acids CH₃Si(?O)XH (X = S, Se, and Te) in the gas phase and a polar and aprotic solution tetrahydrofuran (THF) was undertaken. Calculated results show that the silanol forms CH₃Si(?X)OH are much more stable than the silanone forms CH₃Si(?O)XH in the gas‐phase, which is different from the monochalcogenocarboxylic acids, where the keto forms CH₃C(?O)XH are dominant. This situation may be attributed to the fact that the Si? O and O? H single bonds in the silanol forms are stronger than the Si? X and X? H single bonds in the silanone forms, respectively, even though the Si?X (X = S, Se, and Te) double bonds are much weaker than the Si?O double bond. These results indicate that the stability of the monochalcogenosilanoic acid tautomers is not determined by the double bond energies, contrary to the earlier explanation based on the incorrect assumption that the Si?S double bond is stronger than the S?O double bond for the tautomeric equilibrium of RSi(?O)SH (R?H, F, Cl, CH₃, OH, NH₂) to shift towards the thione forms [RSi(?S)OH]. The binding with CH₃OCH₃ enhances the preference of the silanol form in the tautomeric equilibrium, and meanwhile significantly lowers the tautomeric barriers by more than 34 kJ/mol in THF solution. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

Synthesis,spectroscopic properties,density functional theory calculations and nonlinear optical properties of novel complexes of 5‐hydroxy‐4,7‐dimethyl‐6‐(phenylazo)coumarin with Mn(II), Co(II), Ni(II), Cu(II) and Zn(II) metal ions

5‐Hydroxy‐4,7‐dimethyl‐6‐(phenylazo)coumarin (L) has been synthesized and its novel complexes with Mn(II), Co(II), Ni(II), Cu(II) and Zn(II) metal ions have also been prepared and identified using various analytical tools. The complexes are octahedral binding via one/two oxygen, nitrogen atoms for 1:1 and 1:2 complexes and two/three coordinated water molecules. All the prepared solid complexes behave as neutral in dimethylformamide. The optimized structures of the studied complexes were theoretically investigated at the B3LYP/6‐311G** level. Molecular stability and bond strengths were investigated by applying natural bond orbital analysis. The geometries of the studied complexes are non‐planar as indicated from the values of dihedral angles. The global properties of hardness, global softness and electronegativity were computed. The calculated small energy gap between highest occupied and lowest unoccupied molecular orbital energies shows that charge transfer occurs within the complexes. The obtained total static dipole moment, mean polarizability, anisotropy of polarizability and mean first‐order hyperpolarizability (<β>) were compared with those of urea as a reference material. The results for <β> showed that the complexes are excellent candidates as nonlinear optical materials. The three‐dimensional plots of the molecular electrostatic potential for some selected complexes were investigated.     

DFT study on the role of methanol solvent in Morita–Baylis–Hillman reaction

B3LYP/6‐311++G** calculations have been carried out to study the role of methanol solvent in the trimethylamine‐catalyzed Morita‐Baylis‐Hillman reaction between acraldehyde and formaldehyde with CPCM solvent method and supramolecular model with one explicit CH₃OH solvent molecule, respectively. The optimized geometries and energies of the reactant complexes, intermediates, transition states, and products of the two reaction channels (corresponding to the scenarios of syn‐ and anti‐acraldehyde, respectively) were obtained, and the relative energy profiles were completed. The results reveal that CH₃OH solvent molecules can stabilize the zwitterionic intermediates and largely reduce the barrier of H transfer process by taking part in the formation of the transition state in this process. C? C bond formation step is the rate‐determining step of the whole reaction cycle. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

The Structure and Conformation of (CH3)3CSNO

The gas‐phase molecular structure of (CH₃)₃CSNO was investigated by using electron diffraction, allowing the first experimental geometrical parameters for an S‐nitrosothiol species to be elucidated. Depending on the orientation of the ?SNO group, two conformers (anti and syn) are identified in the vapor of (CH₃)₃CSNO at room temperature, the syn conformer being less abundant. The conformational landscape is further scrutinized by using vibrational spectroscopy techniques, including gas‐phase and matrix‐isolation IR spectroscopy, resulting in a contribution of ca. 80:20 for the anti:syn abundance ratio, in good agreement with the computed value at the MP2(full)/cc‐pVTZ level of approximation. The UV/Vis and resonance Raman spectra also show the occurrence of the conformational equilibrium in the liquid phase, with a moderate post‐resonance Raman signature associated with the 350 nm electronic absorption.     

FC(O)SNCO的电子结构和光电离解离过程

由于拥有―C(O)S―和―NCO基团, FC(O)SNCO的分子和电子结构是非常有趣的. 利用FC(O)SCl和AgNCO制备了FC(O)SNCO,并利用HeI光电子能谱(PES)、光电离质谱(PIMS)以及理论计算研究了其分子和电子结构. 通过将实验、理论计算以及自然键轨道(NBO)分析结合起来, 获得了FC(O)SNCO的最稳定分子构型. 利用外壳层格林函数(OVGF)方法以及与相似化合物的比较, 对其光电子能谱进行了指认. 理论计算表明,对于中性分子最稳定的构型为syn-syn非平面构型, 而电离后的离子最稳定构型为syn-syn平面构型. 实验结果表明, 第一电离能来自于S的孤对电子轨道, 为10.33 eV. 第二至第六电离能分别为12.03、13.23、13.77、14.78、15.99 eV, 并对这些电离能进行了指认. 在光电离质谱中产生了六个质谱峰, 分别为SN⁺、FC(O)⁺、SNCO⁺、FC(O)SN⁺、C(O)SNCO⁺、FC(O)SNCO^+·, 其中FC(O)SNCO^+·的峰是最强峰. 结合HeI光电子能谱和理论计算, 对PIMS进行了分析,并研究了可能的电离和解离过程并对其进行了讨论.     

DFT calculations of the ionization potentials and electron affinities of serinamide

Adiabatic and vertical ionization potentials (IPs) and valence electron affinities (EAs) of serinamide in the gas phase have been determined using density functional theory (DFT) B3LYP, B3P86, and B3PW91 methods with the 6‐311++G** and 6‐311G** basis sets, respectively. IPs and EAs of serinamide in solution have been calculated with the B3LYP method using the 6‐311++G** and 6‐311G** basis sets. Eight possible conformers of serinamide and its charged states in the gas phase have been optimized employing the DFT B3LYP method with 6‐311++G** and 6‐311G** basis sets, respectively. All the adiabatic and vertical ionization potentials (AIPs and VIPs) of eight serinamide conformers in our work are positive values, whether in the gas phase or in solutions; the IPs in solutions are smaller than the results in the gas phase and decrease with increased dielectric constants in solutions. This finding indicates that the cationic states in solutions are more stable than those in the gas phase. All EAs of eight serinamide conformers are negative values in the gas phase, indicating that the anionic states are unstable with respect to electron autodetachment, both adiabatically and vertically. In contrast, all other adiabatic electron affinities (AEAs) are negative values in solutions except for 6S in water; 7S in chloroform, acetone, and water; and 8S in acetone and water, and increase with increasing of dielectric constants in solutions. All vertical electron affinities (VEAs) are negative values in solutions; however, no good rule has been found for these values in solutions. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2006     

Optoelectronic properties of benzotrithiophene isomers: A density functional theory study

Benzotrithiophene (BTT) isomers were investigated using density functional theory (DFT) and time‐dependent DFT (TD‐DFT) with the aim to explore their structures, linear optical properties, vertical and adiabatic ionization potentials (IP_v and IP_a), electron affinities (EA_v and EA_a), and reorganization energies (λ). The computed bond lengths and bond angles at the B3LYP/6–311+G (d, p) level of theory are in good agreement with experimental crystal structures of the known BTTs. These molecules are planar with zero dihedral angle, making them an ideal backbone for high charge mobility. The UV–visible spectra of BTT isomers are in the range 280–360 nm. All BTT isomers have low hole/electron reorganization energies, which is the main characteristic of good hole/electron transporting materials, and these isomers in turn have potential applications in the field of organic materials.     

Synthesis of a New System Containing a Pyramidalized Double Bond: Lack of Reactivity of a Strongly Protected Pyramidalized Double Bond

The chemical reactivity of syn‐ 3 was investigated. The experimental results showed that the central double bond of this system is inert toward chemical reactions. To determine the reactivity of this central double bond, we synthesized syn‐ and anti‐ 7 and recorded their photoelectron spectra. Low first‐ionization potentials of syn‐ and anti‐ 7 (7.6 eV) clearly indicated that these compounds should be highly reactive.     

The O···H intramolecular hydrogen bond in 4‐X‐2‐hydroxybenzaldehydes: The relationships between geometrical parameters,estimated binding energies,and NMR data

The relationships among geometrical parameters, estimated binding energies, and nuclear magnetic resonance data in –C?O···H? O? intramolecular H‐bond of some substituted 2‐hydroxybenzaldehyde have theoretically been studied by B3LYP and MP2 methods with 6‐311++G** and AUG‐cc‐PVTZ basis sets. All substituents increase estimated hydrogen bond energies E_HBs (with the exception of NO₂ and C₂H₅), which are in good correlation with geometrical parameters, topological properties of electron density calculated at O···H bond critical points and ring critical points by using atoms in molecules method, the results of natural bond orbital analysis, and calculated nuclear magnetic resonance data. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010