Hydrogen-bond dynamics for water confined in carbon tetrachloride-acetone mixtures

In a variety of biological scenarios water is found trapped within hydrophobic environments (e.g., ion channels). Its behavior under such conditions is not well understood and therefore is attracting enormous scientific attention. It is of particular interest to understand how the confining environment affects both the structure and dynamics of water. Within this scenario, we report molecular dynamics simulation results for water trapped in a mixture of acetone and carbon tetrachloride whose composition mimics the one employed in recently reported experiments [Gilijamse, J. J.; et al. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 3202]. We show here that the water molecules dissolved in the carbon tetrachloride-acetone mixture assemble in clusters of varying sizes, that the longevity of hydrogen bonds between confined water molecules strongly depends on the cluster size, and that hydrogen bonds last longer for small water clusters in confined water than they do in bulk water. The simulated FT-IR spectra for the confined water are shifted at longer frequencies compared to those observed for bulk liquid water. We discuss the dependence of the FT-IR spectrum on the size of the water clusters dispersed in the carbon tetrachloride-acetone matrix. We also study in detail the rotational orientation of the dispersed water molecules, and we discuss how the composition of the organic matrix affects the results. By enhancing the interpretation of the experimental data, our results contribute to developing a molecular-based understanding of the relationship between environment and water properties.     

Hydrogen-bond dynamics of water confined in cyclodextrin nanosponges hydrogel

Cyclodextrin nanosponges (CDNS) are a very promising class of cross-linked polymers, made up of cyclodextrins. CDNS swollen in aqueous solution give rise to cyclodextrin-based hydrogel in different states—gel or liquid suspension—depending on the hydration level of the system. Here we present a thorough inspection of the vibrational dynamics of these hydrogel by Raman scattering experiments, with the aim of clarifying the role played by the hydrogen-bond dynamics of water molecules confined into the nano-sized pores of nanosponges in determining the rigidity of the hydrogel network and their maximum water-holding capacity. Changes occurring in the spectral shape of the OH stretching band of water were interpreted by accounting the connectivity pattern of water molecules concurring to the gelation process. Spectral deconvolution analysis gives evidence of the existence of a characteristic cross-over hydration level associated to the rearrangement of water molecules in more cooperative, bulk-like networks as a consequence of saturation sites of water confinement of nanosponges. This interpretation is further confirmed by the inspection of the estimated collective intensities. These findings also support the existence of a specific phase diagram of the cyclodextrin nanosponges hydrogel, where the molecular structure of the cross-linking agent used during the synthesis of nanosponge plays a fundamental role in defining the nano- and microscopic properties of the system.     

Cage motions induced by electronic and vibrational excitations: Cl2 in Ar

Femtosecond dynamics of molecular vibrations as well as cage motions in the B<--X transition of Cl2 in solid Ar have been investigated. We observed molecular vibrational wave-packet motion in experimental pump-probe spectra and an additional oscillation with a 500 fs period which is assigned to the zone-boundary phonon of the Ar crystal. The cage motion is impulsively driven by the B<--X transition due to the expansion of the electronic cloud of the chromophore. To clarify the underlying mechanism, we performed simulations based on the diatomics-in-molecules method which takes into account the different shapes of the Cl2 electronic wave function in the B and X states as well as the anisotropic interaction with the matrix. The simulation results show that Ar atom motion in the (100) plane is initiated by the electronic transition and that only those Ar atoms oscillate coherently with an approximately 500 fs period which are essentially decoupled from the molecular vibration. Their phase and time evolution are in good agreement with the experimentally observed oscillation, supporting the assignment as a displacive excitation of coherent phonons.     

Quantum control of vibrational excitations in a heteronuclear diatomic molecule

Optimal control theory is applied to obtain infrared laser pulses for selective vibrational excitation in a heteronuclear diatomic molecule. The problem of finding the optimized field is phrased as a maximization of a cost functional which depends on the laser field. A time dependent Gaussian factor is introduced in the field prior to evaluation of the cost functional for better field shape. Conjugate gradient method^21,24 is used for optimization of constructed cost functional. At each instant of time, the optimal electric field is calculated and used for the subsequent quantum dynamics, within the dipole approximation. The results are obtained using both Morse potential as well as potential energy obtained using ab initio calculations.     

Hydrogen-bond strengths by magnetically induced currents

We present here a "non-invasive" computational method to estimate the strength of individual hydrogen bonds using magnetically induced currents. The method is calibrated using H-bonding dimers, and applied on Watson-Crick DNA base pairs and proton wires in carbonic anhydrase.     

Core excitations of naphthalene: vibrational structure versus chemical shifts

High-resolution x-ray photoelectron emission (XPS) and near-edge x-ray absorption fine structure (NEXAFS) spectra of naphthalene are analyzed in terms of the initial state chemical shifts and the vibrational fine structure of the excitations. Carbon atoms located at peripheral sites experience only a small chemical shift and exhibit rather similar charge-vibrational coupling, while the atoms in the bridging positions differ substantially. In the XPS spectra, C-H stretching modes provide important contributions to the overall shape of the spectrum. In contrast, the NEXAFS spectrum contains only vibrational progressions from particular C-C stretching modes. The accuracy of ab initio calculations of absolute electronic transition energies is discussed in the context of minute chemical shifts, the vibrational fine structure, and the state multiplicity.     

The influence of ultrashort excitations on the vibrational dynamics in a diatomic molecule

The problem of vibrational wave packet dynamics in the system of two electronic states of a diatomic molecule, where the states are coupled by infinitely short light pulses, is solved. The electronic states were modeled by shifted harmonic oscillators with different frequencies. Exact expressions for the probability densities of the wave packets in the ground and excited states were derived. The spatial, spectral, and temporal characteristics of the wave packets, namely, the range of motion, spatial width, mean energy, spectral width (the mean number of vibrational states in a wave packet), and the autocorrelation function, were calculated as functions of the molecular parameters (the frequency ratio and the distance between the potential minima) and of the delay time between the light pulses. The possibility of controlling the mean energy and spectral width of the wave packets in the ground electronic state by varying the delay time is considered. It was shown that "squeezed" wave packets can be prepared in the ground electronic state if the upper electronic state is shallow.     

Hydrogen-bond symmetry in difluoromaleate monoanion

The symmetry of the hydrogen bond in hydrogen difluoromaleate monoanion is probed by X-ray crystallography and by the NMR method of isotopic perturbation in water, in two aprotic organic solvents, and in an isotropic liquid crystal. The X-ray crystal structure of potassium hydrogen difluoromaleate shows a remarkably short O-O distance of 2.41 ? and equal O-H distances of 1.206 ?, consistent with a strong and symmetric hydrogen bond. Incorporation of (18)O into one carboxyl group allows investigation of the symmetry of the H-bond in solution by the method of isotopic perturbation. The (19)F NMR spectra of the mono-(18)O-substituted monoanion in water, CD(2)Cl(2), and CD(3)CN show an AB spin system, corresponding to fluorines in different environments. The difference is attributed to the perturbation of the acidity of a carboxylic acid by (18)O, not to the mere presence of the (18)O, because the mono-(18)O dianion shows equivalent fluorines. Therefore, it is concluded that the monoanion exists as an equilibrating pair of interconverting tautomers and not as a single symmetric structure not only in water but also in organic solvents. However, in the isotropic liquid crystal phase of 4-cyanophenyl 4-heptylbenzoate, tetrabutylammonium hydrogen difluoromaleate-(18)O shows equivalent fluorines, consistent with a single symmetric structure. These results support earlier studies, which suggested that the symmetry of hydrogen bonds can be determined by the local environment.     

Hydrogen-bond strengthening upon photoinduced electron transfer in ruthenium-anthraquinone dyads interacting with hexafluoroisopropanol or water

Quinones play a key role as primary electron acceptors in natural photosynthesis, and their reduction is known to be facilitated by hydrogen-bond donors or protonation. In this study, the influence of hydrogen-bond donating solvents on the thermodynamics and kinetics of intramolecular electron transfer between Ru(bpy)(3)(2+) (bpy = 2,2'-bipyridine) and 9,10-anthraquinone redox partners linked together via one up to three p-xylene units was investigated. Addition of relatively small amounts of hexafluoroisopropanol to dichloromethane solutions of these rigid rodlike donor-bridge-acceptor molecules is found to accelerate intramolecular Ru(bpy)(3)(2+)-to-anthraquinone electron transfer substantially because anthraquinone reduction occurs more easily in the presence of the strong hydrogen-bond donor. Similarly, the rates for intramolecular electron transfer are significantly higher in acetonitrile/water mixtures than in dry acetonitrile. In dichloromethane, an increase in the association constant between hexafluoroisopropanol and anthraquinone by more than 1 order of magnitude following quinone reduction points to a significant strengthening of the hydrogen bonds between the hydroxyl group of hexafluoroisopropanol and the anthraquinone carbonyl functions. The photoinduced intramolecular long-range electron transfer process thus appears to be followed by proton motion; hence the overall photoinduced reaction may be considered a variant of stepwise proton-coupled electron transfer (PCET) in which substantial proton density (rather than a full proton) is transferred after the electron transfer has occurred.     

A conjecture concerning collective excitations in liquid water

We show that the distribution of rings of water molecules in a molecular dynamics simulation of liquid water is consistent with the hypothesis that there are collective coordinates that convert 6-rings to n-rings.     

A detailed analysis of vibrational excitations in x-ray photoelectron spectra of adsorbed small hydrocarbons

The vibrational fine structure of x-ray photoelectron (XP) spectra of a number of different small hydrocarbon molecules and reaction intermediates adsorbed on Pt(111) and Ni(111) has been investigated in detail. The data for methyl, methylidyne, acetylene, and ethylene can consistently be analyzed within the linear coupling model. The S factor, i.e., the intensity ratio of the first vibrationally excited to the adiabatic transition, is obtained to be 0.17+/-0.02 per C-H bond; for the deuterated species a value of 0.23+/-0.02 is obtained. Therefore, the vibrational fine structure can be used for fingerprinting in the analysis of XP spectra and for identifying unknown reaction intermediates. From the data, Deltar, the change of the minimum in the potential energy curve upon core ionization, is calculated within the linear coupling model using a first order correction. For all adsorbates, including the deuterated ones, a value of Deltar=0.060+/-0.004 A is obtained. Furthermore, from the binding energy of the adiabatic peak and from the energy of the vibrational excitation in the ionic final state some information on the adsorbate/substrate bond and the adsorption site can be derived.     

Hydrogen-bond dynamics in the air-water interface

Hydrogen-bond (H-bond) dynamics in the air-water interface is studied by molecular dynamics simulations. The analysis reveals that the dynamics of breaking and forming hydrogen bonds in the air-water interface is faster than that in bulk water for the polarizable water models. This is in contrast to the results found on a protein surface. We show that the difference stems from more rapid translational diffusion in the interface. When the effect of pair diffusion is eliminated, the hydrogen-bond dynamics in the interface is observed to be slower than that in the bulk. This occurs because the number of water molecules adjacent to a hydrogen-bonded pair and available to accept or donate a hydrogen bond is smaller in the interface than in the bulk. The comparison between polarizable water models and fixed-charge models highlights the potential importance of the polarization effect in the water-vapor interface.     

Hydrogen-bond symmetry in zwitterionic phthalate anions: symmetry breaking by solvation

The cationic nitrogen of zwitterion 1 is located symmetrically with respect to its intramolecular OHO hydrogen bond. Incorporation of one (18)O allows investigation of the H-bond symmetry by the NMR method of isotopic perturbation. In both CD(3)OD and CD(2)Cl(2) equilibrium isotope shifts are detected at the carboxyl and ipso carbons. Therefore, 1 exists as a pair of interconverting tautomers, not as a single symmetric structure with its hydrogen centered between the two oxygens. The H-bond is instantaneously asymmetric, and there is an equilibrium between solvatomers (isomers or stereoisomers that differ in solvation). The broader implications of this result regarding the role of the local environment ("solvation") in breaking symmetry are discussed.     

Ultrafast vibrational dynamics of water at a charged interface revealed by two-dimensional heterodyne-detected vibrational sum frequency generation

Two-dimensional heterodyne-detected vibrational sum frequency generation (2D HD-VSFG) spectroscopy is performed for an aqueous interface for the first time. The 2D HD-VSFG spectra in the OH stretch region are obtained from a positively charged surfactant∕water interface with isotopically diluted water (HOD∕D(2)O) to reveal the femtosecond vibrational dynamics of water at the charged interface. The 2D HD-VSFG spectrum is diagonally elongated immediately after photoexcitation, clearly demonstrating inhomogeneity in the interfacial water. This elongation almost disappears at 300 fs owing to the spectral diffusion. Interestingly, the 2D HD-VSFG spectrum at the 0 fs shows an oppositely asymmetric shape to the corresponding 2D IR spectrum in bulk water: The bandwidth of the bleach signal gets narrower when the pump wavenumber becomes higher. This suggests that the dynamics and mechanism of the hydrogen bond rearrangement at the charged interface are significantly different from those in bulk water.     

Ultrafast vibrational dynamics of interfacial water

We report investigations of the vibrational dynamics of water molecules at the water–air and at the water–lipid interface. Following vibrational excitation with an intense femtosecond infrared pulse resonant with the O–H stretch vibration of water, we follow the subsequent relaxation processes using the surface-specific spectroscopic technique of sum frequency generation. This allows us to selectively follow the vibrational relaxation of the approximately one monolayer of water molecules at the interface. Although the surface vibrational spectra of water at the interface with air and lipids are very similar, we find dramatic variations in both the rates and mechanisms of vibrational relaxation. For water at the water–air interface, very rapid exchange of vibrational energy occurs with water molecules in the bulk, and this intermolecular energy transfer process dominates the response. For membrane-bound water at the lipid interface, intermolecular energy transfer is suppressed, and intramolecular relaxation dominates. The difference in relaxation mechanism can be understood from differences in the local environments experienced by the interfacial water molecules in the two different systems.