Ab initio molecular orbital calculations of the infrared spectra of hydrogen-bonded complexes of water,ammonia and hydroxylamine

Summary The geometries of three hydrogen-bonded dimers of hydroxylamine have been optimized, at the MP2 level of theory, using the 6-31G** basis set. These calculations yielded three separate local minima on the dimer potential energy surface. The interaction energies of these three species have been calculated, and corrected for basis set superposition error. The infrared band wavenumbers and intensities have been computed, and the monomer-dimer wavenumber shifts and intensity enhancements rationalized in terms of the types and strengths of hydrogen bonds present. The predicted wavenumbers have been correlated with those measured in a recent matrix isolation spectroscopic study, and an argument for the structure of the preferred dimer has been presented.     

The interaction of water with sulfonium ions and the effects of hydration on the energetics of methyl group transfer: An ab initio molecular orbital study of the hydration of (CH3)3S+ and (CH3)2S+CH2CO2 −

The interactions of the sulfonium ions (CH₃)₃S⁺, (CH₃)₂S⁺CH₂CO₂ ^–, and (CH₃)₂S⁺-CH₂CH₂CO₂ ^– with up to four water molecules have been studied by ab initio molecular orbital methods. Complexes of (CH₃)₃S⁺ with one to three water molecules involve strong electrostatic sulfur-oxygen interactions; in contrast, the sulfide (CH₃)₂S interacts with water molecules via weak S-H hydrogen bonds, suggesting that methyl-group transfer from (CH₃)₃S⁺ in aqueous solution involves a significant alteration of the hydration pattern around the sulfur atom. Two conformers of (CH₃)₂S⁺CH₂CO₂ ^– were found that display sulfur-oxygen distances which are approximately 0.3 å less than the sum of the sulfur and oxygen van der Waals radii, indicating a strong intramolecular electrostatic interaction. For the complexes (CH₃)₂S⁺CH₂CO₂ ^–·nH₂O(n =1–4), water interacts primarily with the carboxylate group via hydrogen bonds, rather than electrostatically with the sulfur atom, although in complexes with the three- and four-water complexes, the proximity of the positively charged sulfur atom to the carboxylate group significantly alters the hydration pattern compared to that in the corresponding of complexes CH₃SCH₂CO₂ ^–· Thus, methyl transfer from (CH₃)₂S⁺CH₂CO₂ ^– to an acceptor in aqueous solution also involves substantial changes in the hydration pattern around the carboxylate group.     

Anab initio SCF molecular orbital study of acetylcholine

A standard ab initio (STO 3 G) study indicates, in distinction to theab initio molecular fragment results, that the preferred conformation of acetylcholin is gauche.     

Intramolecular nucleophilicS N 2 substitution at the tetrahedral carbon atom: Anab initio study

Pentacoordination of carbon atom in bicyclic organic compounds of the pentalene type was studied by theab initio RHF/6-31G^** and MP2(full)/6-31G^** methods. It was shown that intramolecularS _N 2 reactions with energy barriers within the energy scale of NMR spectroscopy can occur in systems in which a linear orientation of the attacking and leaving groups is realized. The barrier to the intramolecular nucleophilic substitution reaction in 2,3-dihydro-3-formylmethylenefuran is 36.9 (RHF) and 27.7 kcal mol⁻¹ (MP2) and decreases to 16.4 and 19.4 kcal mol⁻¹, respectively, in the case of diprotonation at the O atoms in this system. For model pentalene type compounds containing electron-deficient B atoms in the ring, theab initio calculations predict a further decrease in the barrier height (down to less than 10 kcal mol⁻¹). Translated fromIzvestiya Akademii Nauk, Seriya Khimicheskaya, No. 7, pp. 1246–1256, July, 1999.     

Ab initio molecular orbital calculations on ion pair-water complexes of metal halides and oxides

Ab initio MO calculations are performed on a series of ion-molecular and ion pair-molecular complexes of H₂O + MX (MX = LiF, LiCl, NaCl, BeO and MgO) systems. BSSE-corrected stabilization energies, optimized geometrical parameters, internal force constants and harmonic vibrational frequencies have been evaluated for all the structures of interest. The trends observed in the geometrical parameters and other properties calculated for the mono-hydrated contact ion pair complexes parallel those computed for the complexes of the individual ions. The bifurcated structures are found to be saddle points with an imaginary frequency corresponding to the rocking mode of water molecules. The solventshared ion pair complexes have high interaction energies. Trends in the internal force constant and harmonic frequency values are discussed in terms of ion-molecular and ion-pair molecular interactions.     

Anab initio investigation of Cu2Se and Cu4Se2

Summary Experimentally known copper selenium clusters show extraordinary geometrical features, especially short Cu-Cu distances. We report the first theoretical investigation of Cu₂Se and Cu₄Se₂. Various quantum chemical methods (SCF, MP2, CPF, CCSD, CCSD(T), LDF) are applied to determine the importance of dynamic electron correlation. We find that inclusion of correlation does not essentially change the electronic structure of the clusters but has a strong influence on geometries. To reduce the computational effort we apply effective core potentials (ECPs) in combination with small, but carefully optimized basis sets. The applicability of simple modellings of correlation energies for approximate inclusion of correlation effects in SCF geometry optimizations is tested.     

Anab initio theoretical study of the binding of ZnII with biologically significant ligands: CO2, H2O,OH−, imidazole,and imidazolate

Zinc is one of the most important biological metals involved in the catalytic site of many enzymes. SCFab initio computations with good quality basis sets are reported for monoadducts of Zn^II with various biologically significant ligands, and the fundamental features of the binding are characterized, using in particular energy decomposition scheme, population analysis and difference density curves. A test of the possibility of using pseudopotentials in this domain is also reported.     

Hydration and protonation ofO-vinylacetoxime in the gas phase: anab initio study

Ab initio HF/6–31G^* calculations ofO-vinylacetoxime monohydrates and cations were performed. Each conformer forms two stable H-complexes with participation of N and O atoms. The former have planar heavy-atom skeletons, whereas the water molecule in the latter is located above the plane of the proton-acceptor complex. The complexes stabilized by N...HO and O...HO bonds have different dipole moments and frequencies of the OH stretching vibrations. The most energetically favorable cation is formed by adding a proton to the C_β atom of the vinyl group ofO-vinylacetoxime. Theap,ap-conformer (ap is antiperiplanar) of this cation is 6.5 and 34.9 kcal mol⁻¹ more stable than the onium cations with the NH⁺ and OH⁺ fragments, respectively, and is characterized by polarization and appreciable lengthening of the N−O and C=C bonds. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 4, pp. 597–600, April, 2000.     

Anab initio MO study on the direct and migratory reaction mechanism for the formation of HF in H + CIF system

Anab initio MO method has been used to calculate the potential energy surface for the formation of HF when H reacts with C1F. The various transition states possibly related to forming HF were optimized. An IRC calculation starting from the collinear F-centered transition state was performed and energies of a series of points with bending configurations were also calculated to determine the direct reaction path leading to HF product. Another IRC calculation starting from the H-centered transition state was run to determine the migratory path to forming HF. By doing so, the Polanyi’s assumption that it would involve the direct and a migratory mechanisms for the formation of HF when H reacts with CIF has been verified theoretically. Project supported by the National Natural Science Foundation of China.     

Ab initio program for treatment of related molecules. I. Integral part

Anab initio integral program is described. It utilizes the local symmetries to avoid the redundant computation of integrals over spatially equivalent subsets of the basis. The integrals are grouped in a particular way to facilitate their transfer. The program is very suitable for the treatment of related systems with model geometries. The computing times of different programs are compared and the efficiency of the presented one is demonstrated.     

Pentacoordination of boron, carbon, aluminum, and silicon atoms in organic compounds: Anab initio study

Pentacoordination of boron, carbon, aluminum, and silicon atoms in bicyclic organic compounds of the pentalene type was studied using theab initio RHF/6-31G^** and MP2(full)/6-31G^** methods. It was shown that the ability of the atom to form pentacoordinate structures increases on going from B to Al and from C to Si atom,i.e. as the number of the element of Groups IIIA and IVA of the periodic system increases. At the same time, the reverse tendencies are observed in the 2nd and 3rd periods of the periodic system,viz., the ability of the atom to form pentacoordinate structures increases on going from C to B and from Al to Si atom. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1238–1245, July, 1999.     

Ab initio study of the conformational equilibrium of ethylene glycol

Summary The conformational equilibrium of ethylene glycol (CH₂OHCH₂OH) has been examined by performing geometry optimizations at the 6-31G*, MP2/6-31G* and 6-31G** levels. Final energies have been calculated at the MP3 level with the optimized geometries. The two most stable conformers are atGg andgGg but it is verified that the inclusion of electronic correlations reduces their energy difference of 0.6 kcal/mol at the HF level to less than 0.2 kcal/mol. The possible coexistence of the two most stable conformers is in agreement with some previous studies of Frei et al. For thetXg conformer a detailed analysis of the intramolecular potential as a function of rotation around the C-C bond is also reported.     

Ab initio calculations on large molecules using molecular fragments. Characterization of the zwitterion of glycine

The ab initio molecular fragment approach is applied to a characterization study of the ground state of the zwitterion of glycine. Included among the properties studied are the — conformational energy surface, the electronic structure, and the magnitude and direction of the dipole moment. The results of the present study are compared to the results of other theoretical and experimental studies.This work was supported in part by the National Science Foundation, the University of Kansas, and the Upjohn Company, Kalamazoo, Michigan 49001.NSF Trainee (1969-1972).Alfred P. Sloan Research Fellow (1971–1973).     

Desolvation effects on the dissociation energy of diatomic molecules:Ab initio study of the dissociation of Li-F in polar media

Summary The potential curve of the ground state dissociation of Li-F in water has been studied by a combination of a standardab initio Hartree-Fock procedure and a perturbative reaction field approach. The electrostatic solute-solvent interaction is accounted for by the generalized Born formalism introduced through a perturbation approach. The calculations were carried out at a 6–311+G* basis set level. Diffuse functions ofs symmetry were included to model a desolvation potential. A double well potential curve was obtained for the dissociation of this molecule in the presence of a highly polarizable medium. The first minimum, corresponding to an ion pair, electrostatically bound, is found at aR(Li-F)<6.0 Å distance. As the two ions come together, a desolvation barrier of about 30 kcal/mol is to be overcome before the formation of the neutral Li-F at 1.56 Å. The barrier to ionization towards the ion pair is calculated to be about 14 kcal/mol. The dissociation of the ion pair towards the free ions is discussed in terms of the electrostatic solvation entropy changes.Contribution No 6 from Centro de Mecánica Cuantica Aplicada (CMCA)     

Ab initio calculation of the band structure of some boron polymers

Ab initio calculations using a STO-3G basis set have been performed on the polymer systems (HBX) _n where X = Be, BH, CH₂, NH, and O. Energy band diagrams and accompanying density-of-states plots have been obtained. The highest filled orbital of (HBNH) _n and (HBO) _n occurs at the X-point and possesses character while the - framework orbital at the X- point is the highest filled level for (HBBe) _n , (HBBH) _n , and (HBCH₂) _n . The conduction band for all five species has symmetry and the band gap of the (HBX) _n species increases in the order X = Be < BH < NH < O < CH₂. An estimate of the energy of polymerisation of the (HBX) _n systems suggests that HBNH is particularly stabilised by polymerisation. The electron distribution in (HBBe) _n shows a - electron drift towards boron, while in the other four systems the net electron transfer is directed away from boron. There is significant electron back-donation to boron in (HBO) _n and (HBNH) _n .     

A comparative ab initio study of ethylene,acetylene and benzene

Ground state properties have been calculated by use of a medium-sized Gaussian basis set and comparison with other bases has been made. Contraction to double-zeta of a comparatively small basis is found to be superior to a large set of primitive Gaussians contracted to minimal basis. Molecular optimization is not important for double-zeta bases. Inclusion of a balanced set of polarization functions is essential in all cases studied. Population analysis gives a certain insight in molecular properties but contour maps are found to be significantly superior. This is demonstrated on bonding properties of corresponding orbitals within the series. In case of benzene Slater's energyband plot is shown to be useful for classifying bonding properties.     

Binary molecular complexes of silicon tetrafluoride with water,methanol, and dimethyl ether. Quantum-chemical study

The molecular structures, the energies of complex formation, and the vibrational spectra of the binary molecular complexes of SiF₄ with water, methanol, and dimethyl ether were calculated by the ab initio MP2 method with the basis sets up to 6-311++G(2d,2p). In the complexes, which have been detected previously by IR spectroscopy in low-temperature (12—15 K) inert matrices, the five-coordinate Si atom is in a distorted trigonal-bipyramidal environment, which is formed through the donor-acceptor interaction of the O atom with the Si atom and is additionally stabilized by the H...F hydrogen bonds.     

Heterometallic Coii-Lii carboxylate complexes with N-heterocyclic carbene,triphenylphosphine and pyridine: a comparative study of magnetic properties

Heterometallic Coii-Lii compounds with N-heterocyclic carbene 1,3-bis(2,4,6-trimethylphenyl)imidazol-2-ylidene (IMes), tri phenylphosphine (Ph3P) and pyridine (py), [Co2Li2(Piv)6(IMes)2] (Piv is the anion of pivalic acid), [Co2Li2(Piv)6(Ph3P)2] and [Co2Li2(Fur)6(py)2] (Fur is the anion of 2-furoic acid), respectively, have been prepared and structurally characterized by X-ray crystallography. Easy-plane magnetic anisotropy in Coii complexes with pseudo-tetrahedral cores CoO3X (X = C, P and N) was revealed by measuring the magnetic properties together with quantum-chemical calculations using the SA-CASSCF/NEVPT2 approach. The field-induced slow magnetic relaxation of the complexes was mainly attributed to the Raman and direct processes.     

Problems and prospects in the ab initio treatment of pure and defective crystals

Accurate Hartree-Fock LCAO calculations for moderately complex crystalline systems are now feasible; a number of important applications may be envisaged in the areas of material science and technology. Some critical aspects of the corresponding computer schemes are discussed which are of fundamental importance in determining the cost of the computation. Data are provided concerning actual computations which are indicative of the kind of periodic systems that can (or cannot) be treated at present. The result of a perfect-crystal ab initio HF study can be used as an input for treating with the same approximation local-defect problems, by use of suitable embedding techniques. A scheme of this kind is presented, and its computational implications are discussed: due to the intrinsic complexity of this problem, it may be foreseen that the study of defects in crystals will be a typical application of supercomputers in the area of quantum chemistry.This paper was presented at the International Conference on The Impact of Supercomputers on Chemistry, held at the University of London, London, UK, 13–16 April 1987     

Ab initio study of the complexes of first-row transition-metal ions with CH, CH2, and CH3

The geometries and bonding characteristics of the complexes of the first-row transition-metal ions with CH, CH₂ and CH₃ were investigated byab initio molecular orbital theory. MCH⁺ and MCH₂ ⁺ are linear and coplanar, respectively. Both of them are with obvious treble or double bond characteristics, but these multiple bonds are mostly “imperfect”. The calculated bond dissociation energies of , and are mostly close to the experimental values, and appear in similar periodic trends from Sc to Zn. Project supported by the National Natural Science Foundation of China (Grant No. 29170070).