Metal‐Ion‐Mediated Tuning of Duplex DNA Binding by Bis(2‐(2‐pyridyl)‐1H‐benzimidazole)

Studies of double‐stranded‐DNA binding have been performed with three isomeric bis(2‐(n‐pyridyl)‐1H‐benzimidazole)s (n=2, 3, 4). Like the well‐known Hoechst 33258, which is a bisbenzimidazole compound, these three isomers bind to the minor groove of duplex DNA. DNA binding by the three isomers was investigated in the presence of the divalent metal ions Mg²⁺, Co²⁺, Ni²⁺, Cu²⁺, and Zn²⁺. Ligand–DNA interactions were probed with fluorescence and circular dichroism spectroscopy. These studies revealed that the binding of the 2‐pyridyl derivative to DNA is dramatically reduced in the presence of Co²⁺, Ni²⁺, and Cu²⁺ ions and is abolished completely at a ligand/metal‐cation ratio of 1:1. Control experiments done with the isomeric 3‐ and 4‐pyridyl derivatives showed that their binding to DNA is unaffected by the aforementioned transition‐metal ions. The ability of 2‐(2‐pyridyl)benzimidazole to chelate metal ions and the conformational changes of the ligand associated with ion chelation probably led to such unusual binding results for the ortho isomer. The addition of ethylenediaminetetraacetic acid (EDTA) reversed the effects completely.     

Synthesis,spectroscopic characterization and biological evaluation of a novel chemosensor with different metal ions

A novel chemosensor, namely 3‐(4‐chlorophenyl)‐1‐(pyridin‐2‐yl)prop‐2‐en‐1‐one, CPPEO, and its metal complexes have been synthesized and characterized by using sets of chemical and spectroscopic techniques, such as elemental analysis, mass, Fourier transform‐infrared and UV–Vis spectral analysis. The thermal properties of the metal complexes have been investigated by thermogravimetric techniques. The decomposition mechanism of the titled complexes was suggested. The results showed that the Co²⁺ and Mn²⁺ complexes have an octahedral geometry, while Zn²⁺ and Cd²⁺ complexes have tetrahedral geometry. The kinetic and thermodynamic parameters of the thermal decomposition stages have been evaluated using the Coats–Redfern method. The optical sensing response of the investigated chemosensor to the different metal ions was investigated. It responds well to the tested metal ions as reflected from the significant change in both absorption and emission spectra upon adding different concentrations of the metal salts, confirming the intramolecular charge transfer of the chemosensor upon effective coordination with the used metal ions. This leads to enhancing ICT interaction, causing a significant shift in the presence of strongly complexing metal ions. This was fully reversible, where the solution of dye‐metal ion complex was decomplexed by adding an EDTA solution to revert the original spectrum of the dye. The stability constants, K, for the complexes of the investigated chemosensor with the mentioned metal ions were calculated, indicating that Co²⁺ is the most effectively detected, and the potential of the novel dye was highly efficient switchers for Co²⁺ ions. Additionally, the molecular modeling was carried out for the chemosensor and its metal complexes. Finally, the solid complexes have been tested for their in vitro antimicrobial activities against some bacterial strains (Gram +ve and Gram ?ve bacteria), as well as antifungal strains.     

Water-Soluble Polyacids with Capability to Remove Metal Ions in Homogenous Phase by Using the Liquid Phase Polymer-Based Retention Technique

Water-soluble polymers containing carboxylic acid and sulfonic acid groups were investigated as polychelatogens under different experimental conditions in view to study their metal ion binding properties, using the liquid-phase polymer-based retention technique. The divalent metal ions investigated were: Co²⁺, Cu²⁺, Zn²⁺, and Cd²⁺. When the pH increased above 3, and especially at pH 5, metal ion retention capability increased as the majority of the functional groups are carboxylate, which can form more stable complexes with the metal ions. The retention capability also depended on the structure of the polyacid and the filtration factor, Z.     

Terpyridine-based smart organic-inorganic hybrid gel as potential dye-adsorbing agent for water purification

A terpyridine-based organic-inorganic hybrid gelator possessing triethoxylsilane moiety was synthesized and its adsorption capacity for aromatic dyes in the absence and the presence of metal ions such as Zn²⁺ and Cu²⁺ was measured by UV-vis spectroscopy. From aqueous solutions of dyes, the hybrid gel, in the absence of metal ions, adsorbed 97.4% for basic blue 41, 94.2% for crystal violet, and 41.5% for bromocresol green. When metal ion was present, the adsorption capacity of dried hybrid gel 1 for the anionic dye bromocresol green significantly increased due to the enhanced electrostatic interaction between cationic gel and anionic dye. Thus, this hybrid gel can efficiently adsorb various toxic dyes in water.     

Thermal and ion-exchange studies on chelating terpolymer resins derived from o cresol urea formaldehyde

Terpolymers prepared by condensation of o cresol and urea with formaldehyde in presence of acid catalyst (2 M HCl) proved to be selective chelating ion exchange resins for certain metal ions. The molecular weights of the synthesised terpolymers were determined by GPC Technique. TGA analysis was employed to study the thermal stability and the kinetic data like activation energy of the terpolymer resins. Chelation ion exchange properties of these terpolymers were studied for Fe³⁺, Co²⁺, Ni²⁺, Cu²⁺, Zn²⁺, Pb²⁺ and Cd²⁺ ions. A batch equilibrium method was employed in the study of the selectivity of metal ion uptake involving the measurements of distribution of a given metal ion between the polymer samples. The study was carried out over a wide pH range and in media of various ionic strengths.     

Molecular Dynamics Simulations of Metal Ion Binding to the His‐tag Motif

In our previous study, we have observed that the chelation of various metal ions to the His‐tag motifs mostly involves the i and i+2 His residues for Ni²⁺, Cu²⁺, Zn²⁺ and Co²+. In the present study, various 200 ps molecular dynamics simulations were further conducted to investigate the chelating pathway of various metal ions to the His‐tag motif with 6 His residues (His‐tag6) and the binding affinities of these metal binding pockets towards these metal ions. The results indicate that His‐tag6 with the chelated metal ion located in positions His(2,4) or His(3,5) exhibits the strongest affinity for Ni²+ and Cu²+.K⁺ was found to be preferred to chelate in His(1,3) and His(3,5) coordinations. However, Fe³+ was found to have higher affinity towards His(1,3) and His(2,4) binding pockets. Our results also suggest that Ni²⁺ exhibits the highest binding affinity towards His‐tag6 over the other metal ions. Most of the structural variations of the His‐tag6 motif were from the Histidyl side chains during metal ion binding. In addition, there is an inverse linear correlation between the final chelated distance and the charge/volume ratio of metal ion. There is a negative correlation between the metal binding affinity and the averaged potential energy generated from the MD simulations.     

Binding of metal ions by polyethylenimine and its derivatives

Measurements have been made of the binding of divalent metal ions, Cu²⁺, Ni²⁺, Co²⁺, and Zn²⁺ ions, by polyethylenimine (PEI) and its acetyl or alkyl derivatives by the equilibriumdialysis technique. These metal ions, in particular the Cu²⁺ ion, exhibited tremendously remarkable binding affinity toward PEI. The extent of complexation of the polymer with the metal ions was decreased markedly by acetylation or alkylation of the polymer. PEI with no primary amine showed an appreciable decrease in its affinity for the metal ion. These results indicate the participation of the primary amine of the polymer in the formation of the complex. A cooperative binding isotherm was observed in PEI–metal ion complex formation, suggesting swelling or conformational change of the polymer induced by this coordination process. Binding of the Cu²⁺ ion by PEI was found to be essentially independent of temperature over the range 5–35°C.     

Hetero-binuclear chelates of Mn(II), Co(II) and Cu(II) o-cresolphthalein complexonates with other metal ions

Heterobinuclear metal chelates of Mn²⁺, Co²⁺ or Cu²⁺ and some transition metal ions with o-cresolphthalein complexone have been prepared and characterized. Elemental analyses are in agreement with proposed formulae. Thermal analyses (TGA and DTA) were used to determine the degradation products; some thermodynamic parameters were calculated. IR and UV-Vis spectra identified the mode of bonding between the metal ions and the ligand as well as its geometry. Magnetic moment determination and ESR spectra of the heterobinuclear complex revealed some antiferromagnetic interaction between the metal ions, which depends mainly on the two metal ions forming the chelate. Electrochemical studies of the complexes [DC-polarography and cyclic voltammetry (CV)] confirmed the existence and the nature of the metal ions in the chelate.     

Advanced oxidation processes for decolorization of aqueous solution containing acid red G azo dye

Some investigations concerning the decolorization of Acid Red G azo dye by photooxidation with hydrogen peroxide were performed. The influences of pH, oxidant concentration, and the presence of Fe²⁺ or other metal ions (Co²⁺, Cu²⁺, Ni²⁺, Mn²⁺) as potential catalysts, were investigated. The best results were obtained in the presence of ferrous ions in acid and neutral media. The other ions are not as effective as Fe²⁺ for dye decolorization. Co²⁺ and Cu²⁺ ions have a catalytic action, at low concentration, within a wide range of pH. Ni²⁺ and Mn²⁺ ions have no catalytic effect in photooxidation with hydrogen peroxide at acid Ni²⁺ and Mn²⁺ ions have no catalytic effect in photooxidation with hydrogen peroxide at acid pH values, but show a weak action in alkaline media.     

Thermodynamics of citrate complexation with Mn<Superscript>2+</Superscript>, Co<Superscript>2+</Superscript>, Ni<Superscript>2+</Superscript> and Zn<Superscript>2+</Superscript> ions

Isothermal titration calorimetry has been used to determine the stoichiometry, formation constants and thermodynamic parameters (ΔG ^o, ΔH, ΔS) for the formation of the citrate complexes with the Mn²⁺, Co²⁺, Ni²⁺ and Zn²⁺ ions. The measurements were run in Cacodylate, Pipes and Mes buffer solutions with a pH of 6, at 298.15 K. A constant ionic strength of 100 mM was maintained with NaClO₄. The influence of a metal ion on its interaction energy with the citrate ions and the stability of the resulting complexes have been discussed.     

Paramagnetic Solid-State NMR to Localize the Metal-Ion Cofactor in an Oligomeric DnaB Helicase

Paramagnetic metal ions can be inserted into ATP-fueled motor proteins by exchanging the diamagnetic Mg²⁺ cofactor with Mn²⁺ or Co²⁺. Then, paramagnetic relaxation enhancement (PRE) or pseudo-contact shifts (PCSs) can be measured to report on the localization of the metal ion within the protein. We determine the metal position in the oligomeric bacterial DnaB helicase from Helicobacter pylori complexed with the transition-state ATP-analogue ADP:AlF₄⁻ and single-stranded DNA using solid-state NMR and a structure-calculation protocol employing CYANA. We discuss and compare the use of Mn²⁺ and Co²⁺ in localizing the ATP cofactor in large oligomeric protein assemblies. ³¹P PCSs induced in the Co²⁺-containing sample are then used to localize the DNA phosphate groups on the Co²⁺ PCS tensor surface enabling structural insights into DNA binding to the DnaB helicase.     

A Highly Copper‐Selective Ratiometric Fluorescent Sensor Based on BODIPY

A new ratiometric fluorescent sensor ( 1 ) for Cu²⁺ based on 4,4‐difluoro‐4‐bora‐3a,4a‐diaza‐s‐indacene (BODIPY) with di(2‐picolyl)amine (DPA) as ion recognition subunit has been synthesized and investigated in this work. The binding abilities of 1 towards different metal ions such as alkali and alkaline earth metal ions (Na⁺, K⁺, Mg²⁺, Ca²⁺) and other metal ions ( Ba²⁺, Zn²⁺, Cd²⁺, Fe²⁺, Fe³⁺, Pb²⁺, Ni²⁺, Co²⁺, Hg²⁺, Ag⁺) have been examined by UV‐vis and fluorescence spectroscopies. 1 displays high selectivity for Cu²⁺ among all test metal ions and a ～10‐fold fluorescence enhancement in I₅₈₂/I₅₅₈ upon excitation at visible excitation wavelength. The binding mode of 1 and Cu²⁺ is a 1:1 stoichiometry determined via studies of Job plot, the nonlinear fitting of the fluorometric titration and ESI mass.     

Spectroscopic Capture and Reactivity of a Low‐Spin Cobalt(IV)‐Oxo Complex Stabilized by Binding Redox‐Inactive Metal Ions

High‐valent cobalt‐oxo intermediates are proposed as reactive intermediates in a number of cobalt‐complex‐mediated oxidation reactions. Herein we report the spectroscopic capture of low‐spin (S=1/2) Co^IV‐oxo species in the presence of redox‐inactive metal ions, such as Sc³⁺, Ce³⁺, Y³⁺, and Zn²⁺, and the investigation of their reactivity in C? H bond activation and sulfoxidation reactions. Theoretical calculations predict that the binding of Lewis acidic metal ions to the cobalt‐oxo core increases the electrophilicity of the oxygen atom, resulting in the redox tautomerism of a highly unstable [(TAML)Co^III(O^.)]^2? species to a more stable [(TAML)Co^IV(O)(Mⁿ⁺)] core. The present report supports the proposed role of the redox‐inactive metal ions in facilitating the formation of high‐valent metal–oxo cores as a necessary step for oxygen evolution in chemistry and biology.     

Investigation of the metal binding site in methionine aminopeptidase by density functional theory

All methionine aminopeptidases exhibit the same conserved metal binding site. The structure of this site with either Co²⁺ions or Zn²⁺ions was investigated using density functional theory. The calculations showed that the structure of the site was not influenced by the identity of the metal ions. This was the case for both of the systems studied; one based on the X-ray structure of the human methionine aminopeptidase type 2 (hMetAP-2) and the other based on the X-ray structure of the E. colimethionine aminopeptidase type 1 (eMetAP-1). Another important structural issue is the identity of the bridging oxygen, which is part of either a water molecule or a hydroxide ion. Within the site of hMetAP-2 the results strongly indicate that a hydroxide ion bridges the metal ions. By contrast, the nature of the oxygen bridging the metal ions within the metal binding site of eMetAP-1 cannot be determined based on the results here, due to the similar structural results obtained with a bridging water molecule and a bridging hydroxide ion.     

Two Histidines in an α‐Helix: A Rigid Co2+‐Binding Motif for PCS Measurements by NMR Spectroscopy

Pseudocontact shifts (PCS) generated by paramagnetic metal ions present valuable long‐range information in the study of protein structural biology by nuclear magnetic resonance (NMR) spectroscopy. Faithful interpretation of PCSs, however, requires complete immobilization of the metal ion relative to the protein, which is difficult to achieve with synthetic metal tags. We show that two histidine residues in sequential turns of an α‐helix provide a binding site for a Co²⁺ ion, which positions the metal ion in a uniquely well‐defined and predictable location. Exchange between the bound and free cobalt is slow on the timescale defined by chemical shifts, but the NMR resonance assignments are nonetheless readily transferred from the diamagnetic to the paramagnetic NMR spectrum by an I_zS_z‐exchange experiment. The double‐histidine‐Co²⁺ motif offers a straightforward, inexpensive, and convenient way of generating precision PCSs in proteins.     

Radiation-chemical reduction of CO2+ ions in aqueous solution. Metal sols and their properties

The radiation-chemical reduction of Co²⁺ ions in an aqueous solution of Co(ClO₄)₂ containing sodium formate was studied. Stable metal sols containing spherical particles with a diameter of 2–4 nm are formed under γ-irradiation in the presence of polyacrylate as the stabilizing additive. An aqueous solution of colloidal cobalt has an optical absorption that increrases smoothly in the UV region without a maximum to 200 nm (ɛ₂₀₀=1.3·10⁴ mol^-1 L cm^-1). It is established that the radiation-chemical reduction of the Co²⁺ ions occursvia an autocatalytic mechanism. The metal sols catalyze the reduction of the Co²⁺ ions by Co₂ ⁻ radical ions formed under irradiation. The properties of the sols were studied, and it is shown that they are readily oxidized by hydrogen peroxide and other oxidants. The mechanism of chemical reactions involving the sols is discussed. Tranalated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 1959–1964, October, 1998.     

Binding Interaction of Captopril with Metal Ions: A Fluorescence Quenching Study

The binding interaction of captopril (CPL) with biologically active metal ions Mg²⁺, Ca²⁺, Mn²⁺, Co²⁺, Ni²⁺, Cu²⁺ and Zn²⁺ was investigated in an aqueous acidic medium by fluorescence spectroscopy. The experimental results showed that the metal ions quenched the intrinsic fluorescence of CPL by forming CPL‐metal complexes. It was found that static quenching was the main reason for the fluorescence quenching. The quenching constant in the case of Cu²⁺ was highest among all quenchers, perhaps due to its high nuclear charge and small size. Quenching of CPL by metal ions follows the order Cu²⁺>Ni²⁺>Co²⁺>Ca²⁺>Zn²⁺>Mn²⁺>Mg²⁺. The quenching constant K_sv, bimolecular quenching constant K_q, binding constant K and the binding sites "n" were determined together with their thermodynamic parameters at 27 and 37°C. The positive entropy change indicated the gain in configurational entropy as a result of chelation. The process of interaction was spontaneous and mainly ΔS‐driven.     

Chelation ion-exchange properties of salicylic acid-urea-formaldehyde copolymers

Chelation ion-exchange properties of copolymers prepared from salicylic acid, urea and formaldehyde by condensation in presence of acid catalyst were studied for Cu²⁺, Fe³⁺, UO²⁺, Mn²⁺,Zn²⁺ and Co²⁺ ions. A batch equilibration method was adopted to study the selectivity of metal ion uptake. This method involved the measurement of distribution of a given metal between the copolymer sample and a solution containing the metal ions. The study was carried out over a wide pH range and in media of various ionic strengths. The copolymer showed a higher selectivity for UO₂ ²⁺, Cu²⁺ and Fe³⁺ ions than Mn²⁺, Co²⁺ and Zn²⁺ ions.     

Simple imine linked colorimetric and fluorescent receptor for sensing Zn ions in aqueous medium based on inhibition of ESIPT mechanism

Herein, we report the highly selective binding of Zn²⁺ ion by the salicylaldimine based Schiff base chromogenic receptor 1 [(N,N′-bis (salicylidine)-o-phenylenediamine]. Receptor 1 senses Zn²⁺ ion in aqueous medium by colorimetric and fluorescent response in the presence of other metal ions like Pb²⁺, Hg²⁺, Sn²⁺, Cd²⁺. Receptor 1 on binding with Zn²⁺ ion exhibits fluorescence enhancement which is due to the inhibition of the (ESIPT) mechanism.     

Amphiphilic Schiff Base Organogels: Metal‐Ion‐Mediated Chiral Twists and Chiral Recognition

New amphiphilic gelators that contained both Schiff base and L ‐glutamide moieties, abbreviated as o‐SLG and p‐SLG, were synthesized and their self‐assembly in various organic solvents in the absence and presence of metal ions was investigated. Gelation test revealed that o‐SLG formed a thermotropic gel in many organic solvents, whilst p‐SLG did not. When metal ions, such as Cu²⁺, Zn²⁺, Mg²⁺, Ni²⁺, were added, different behaviors were observed. The addition of Cu²⁺ induced p‐SLG to from an organogel. In the case of o‐SLG, the addition of Cu²⁺ and Mg²⁺ ions maintained the gelating ability of the compound, whilst Zn²⁺ and Ni²⁺ ions destroyed the gel. In addition, the introduction of Cu²⁺ ions caused the nanofiber gel to perform a chiral twist, whilst the Mg²⁺ ions enhanced the fluorescence of the gel. More interestingly, the Mg²⁺‐ion‐mediated organogel showed differences in the fluorescence quenching by D ‐ and L ‐tartaric acid, thus showing a chiral recognition ability.