New strategy to identify radicals in a time evolving EPR data set by multivariate curve resolution-alternating least squares

Electron paramagnetic resonance (EPR) spectroscopy is a powerful technique that is able to characterize radicals formed in kinetic reactions. However, spectral characterization of individual chemical species is often limited or even unmanageable due to the severe kinetic and spectral overlap among species in kinetic processes. Therefore, we applied, for the first time, multivariate curve resolution-alternating least squares (MCR-ALS) method to EPR time evolving data sets to model and characterize the different constituents in a kinetic reaction. Here we demonstrate the advantage of multivariate analysis in the investigation of radicals formed along the kinetic process of hydroxycoumarin in alkaline medium. Multiset analysis of several EPR-monitored kinetic experiments performed in different conditions revealed the individual paramagnetic centres as well as their kinetic profiles. The results obtained by MCR-ALS method demonstrate its prominent potential in analysis of EPR time evolved spectra.     

Characterization of the dispersion process for NiFe2O4 nanocrystals in a silica matrix with infrared spectroscopy and electron paramagnetic resonance

The structural development of the NiFe₂O₄ nanocrystals dispersed in a silica matrix was followed by IR and EPR spectroscopies of the dried gel 10NiO–10Fe₂O₃–90SiO₂ after heat treatment. The dried gel obtained at 200°C was amorphous, in which Fe³⁺ and Ni²⁺ ions were distributed in the pores of silica matrix. When the dried gel was heat treated at 400°C, NiFe₂O₄ clusters were partially formed, showing an enhanced interaction with the silica matrix. NiFe₂O₄ clusters were completely formed in silica matrix when the heat treatment was increased to 600°C, at which the interactions between the clusters and silica matrix reached a maximum. The formation reaction of NiFe₂O₄ clusters was accompanied by a rearrangement of the silica matrix network. Further increase of the heat treatment temperature to 800°C led to superparamagnetic single domain NiFe₂O₄ nanocrystals (ca. 4 nm) dispersed in the silica matrix with the elimination of the interactions between magnetic nanocrystals and silica matrix.     

EPR and DFT Study of the Polycyclic Aromatic Radical Cations from Friedel-Crafts Alkylation Reactions

Electron paramagnetic resonance and electron-nuclear double resonance methods were used to study the polycyclic aromatic radical cations produced in a Friedel-Crafts alkylating sys- tem, with m-xylene, or p-xylene and alkyl chloride. The results indicate that the observed electron paramagnetic resonance spectra are due to polycyclic aromatic radicals formed from the parent hydrocarbons. It is suggested that benzyl halides produced in the Friedel-Crafts alkylation reactions undergo Scholl self-condensation to give polycyclic aromatic hydrocar- bons, which are converted into corresponding polycyclic aromatic radical cations in the presence of AlCl3. The identification of observed two radicals 2,6-dimethylanthracene and 1,4,5,8-tetramethylanthraeene were supported by density functional theory calculations using the B3LYP/6-31G（d,p）//B3LYP/6-31G（d） approach. The theoretical coupling constants support the experimental assignment of the observed radicals.     

Magnetization and EPR of a series of Cr squarate dimers

A series of Cr(III) dimers were synthesized from a parent compound [Cr₂(μ-oxo)₂(μ_1,2-C₄O₄)₂(H₂O)₄]·2H₂O (I) by ligand substitution. The compounds have been analyzed using variable frequency EPR (9–110 GHz) and magnetic susceptibility as a function of field (0–9 T) and temperature (1.9–300 K) to obtain their electronic g-values, exchange energies, and zero-field parameters. The parent compound exhibits a broad maximum around 34 K characteristic of a dimer with antiferromagnetic coupling that fit the Van Vleck susceptibility model well. It was found that the maxima could be tuned from 34 to 80 K by ligand substitution of the waters. Each compound possesses a characteristic color spanning the range of teal to pink. The g-value of each compound was found to be ∼1.98 using spectral simulation. The DMSO derivative is water soluble and has a high LC₅₀ for PC3 cancer cells, suggesting its use as a magnetic resonance imaging agent. X-ray crystal structure of the DMSO derivative [Cr₂(μ-oxo)₂(μ_1,2-C₄O₄)₂(C₂H₆SO)₄]·2H₂O (II) revealed that the DMSO ligands are equatorial, and the squarate groups bridge the two chromiums. This is in contrast to the previously proposed structure of the parent compound where the water ligands were axial and the equatorial squarate groups did not bridge the chromiums. These compounds are interesting because of their ease of synthesis, and their wide range of magnetic behavior. The compounds are good probes into antiferromagnetic dimer exchange by controlling the ligand field surrounding the superexchange pathway present in the molecule.     

Solid-state NMR and EPR study of fluorinated carbon nanofibers

Carbon nanofibers were fluorinated in two manners, in pure fluorine gas (direct fluorination) and with a fluorinating agent (TbF₄ during the so-called controlled fluorination). The resulting fluorinated nanofibers have been investigated by solid-state nuclear magnetic resonance (NMR) and electron paramagnetic resonance (EPR). This underlines that the fluorination mechanisms differ since a (CF)_n structural type is obtained, whatever the temperature, with the controlled reaction, whereas, during the direct process, a (C₂F)_n type is formed over a wide temperature range. Through a careful characterization of the products, i.e. density of dangling bonds (as internal paramagnetic centers), structural type (acting on molecular motion) and specific surface area (related to the amount of physisorbed O₂), the effect of atmospheric oxygen molecules on the spin-lattice nuclear relaxation has been underlined.     

Carbon monoxide and oxygen interaction with Ru/MgF<Subscript>2</Subscript> catalyst: IR and EPR studies

Electron paramagnetic resonance (EPR) and infrared (IR) spectroscopy were used to study the formation of ruthenium and adsorbed species appearing on the catalyst upon the adsorption of CO and O₂ on 1.37 wt% Ru/MgF₂ catalysts derived from Ru₃(CO)₁₂. The presence of Ru ^x+ sites in spite of a reductive H₂ treatment at 673 K was observed by EPR and IR spectroscopy beside metallic Ru⁰ species. Both IR and EPR results provided clear evidence for the interaction between surface ruthenium and probe molecules. The IR spectra recorded after admission of CO showed a band at approx. 2000 cm⁻¹, due to linearly adsorbed CO on Ru⁰/MgF₂ and two bands at higher frequencies (approx. 2140 and approx. 2070 cm⁻¹), related to CO on oxidized Ru ⁿ⁺ species, e.g., to Ru(CO)₃ complex with Ru in the 1+ and/or 2+ state of oxidation and Ru(CO)₂ with Ru in the 3+ and/or 4+ state of oxidation. A weak anisotropic EPR signal with g _‖ = 2.017 and g _⊥ = 2.003 is due to O ₂ ⁻ radicals and a formation of Ru⁴⁺-O ₂ ⁻ complex is postulated. The Ru³⁺ appears to oxidize to Ru⁴⁺ and the resulting dioxygen anion is coordinated to the ruthenium. The strong, isotropic EPR signal at g ₀ = 2.003 detected upon admission of CO is attributed to CO radical anion rather than to any ruthenium carbonyl complexes.     

Study of binding and denaturation dynamics of IgG and anti-IgG using dual color fluorescence correlation spectroscopy

In this article, we present a systematic study on IgG and Fab fragment of anti-IgG molecules using fluorescence auto- and cross-correlation spectroscopy to investigate their diffusion characteristics, binding kinetics, and the effect of small organic molecule, urea on their binding. Through our analysis, we found that the diffusion coefficient for IgG and Fab fragment of anti-IgG molecules were 37 ± 2 μm² s⁻¹ and 56 ± 2 μm² s⁻¹, respectively. From the binding kinetics study, the respective forward (k_a) and backward (k_d) reaction rates were (5.25 ± 0.25) × 10⁶ M⁻¹ s⁻¹ and 0.08 ± 0.005 s⁻¹, respectively and the corresponding dissociation binding constant (K_D) was 15 ± 2 nM. We also found that urea inhibits the binding of these molecules at 4 M concentration due to denaturation.     

Irradiated bivalve mollusks: Use of EPR spectroscopy for identification and dosimetry

High energy radiation treatment of foodstuff for microbial control and shelf-life extension is being used in many countries. However, for consumer protection and information, the European Union has adopted the Directives 1999/2/EC and 1999/3/EC to harmonize the rules concerning the treatment and trade of irradiated foods in EU countries. Among the validated methods to detect irradiated foods the EU directives also include Electron Paramagnetic Resonance (EPR/ESR) spectroscopy.We describe herein the use of EPR for identification of four species of bivalve mollusks, i.e. brown Venus shells (Callista chione), clams (Tapes semidecussatus), mussels (Mytilus galloprovincialis) and oysters (Ostrea edulis) irradiated with ⁶⁰Co γ-rays. EPR could definitely identify irradiated seashells due to the presence of long-lived free radicals, primarily CO₂⁻, CO₃³⁻, SO₂⁻ and SO₃⁻ radical anions. The presence of other organic free radicals, believed to originate from conchiolin, a scleroprotein present in the shells, was also ascertained. The use of one of these radicals as a marker for irradiation of brown Venus shells and clams can be envisaged. We also propose a dosimetric protocol for the reconstruction of the administered dose in irradiated oysters.     

Optical emission spectroscopy as a real time diagnostic tool for plasma-assisted deposition of TiN

Real-time optical emission spectroscopy (OES) was used to monitor the deposition of TiN both from mixtures of tetrakis(dimethylamino)titanium (TDMATi)-N₂ and TiCl₄-H₂-N₂ in an electron cyclotron resonance chemical vapor deposition system. The accurate control of the ratio of the emission intensities of ionized nitrogen at 391.4 nm and molecular nitrogen at 357.7 nm (N ₂ ⁺ /N₂) led to low temperature deposition of stoichiometric TiN (Ti/N ≈ 1) and very low resistivity in both cases. It was found that high ion density plasmas are crucial for a considerable reduction of the deposition temperature while maintaining good film quality. OES shows that the abundance of certain excited plasma species is not only dependent on the gas mixture and the deposition parameters, such as total pressure and microwave power, but also is strongly affected by the magnetic field configuration. The deposition rate and the film resistivity can be related to the emission intensity ratio, I(N ₂ ⁺ )/I(N₂). Finally, the two processes are compared in terms of the quality of as-deposited and heat-treated films. The comparison shows that the films obtained with TDMATi exhibit lower resistivity and are thermally more stable than with TiCl₄.     

Methyl torsional potentials of rotational isomers of m-methylanisole studied by spectral hole-burning spectroscopy

Laser-induced fluorescence (LIF) excitation spectra of m-methylanisole in a supersonic jet were measured. Two series of progressions were observed in the spectrum, originating at 36048 and 36115 cm⁻¹, which were successfully assigned to the transitions to the methyl internal rotational vibronic levels of the two isomers, i.e. cis and trans isomers, with the aid of hole-burning spectrum measurements and quantum-chemical calculations. The progression for the trans isomer was observed up to the 6a₁ band, while only the 3a₁ band in addition to the 0a₁ and 1e bands was observed for the cis isomer. This finding can be explained by the conformational change upon the electronic excitation; the 60° rotation of the methyl torsional angle takes place for the trans isomer but not for the cis isomer.     

An EPR Study on Intramolecular Spin Exchange and Rotational Mobility of Nitroxides Linked by a Longchain

ＩｎｔｒｏｄｕｃｔｉｏｎＴｈｅｓｐｉｎｅｘｃｈａｎｇｅｂｅｔｗｅｅｎｐａｒａｍａｇｎｅｔｉｃｐａｒｔｉｃｌｅｓｍａｋｅｓｉｔｐｏｓｓｉｂｌｅｔｏｏｂｔａｉｎｕｎｉｑｕｅｉｎｆｏｒｍａｔｉｏｎｏｎｔｈｅｋｉｎｅｔｉｃｓａｎｄｍｅｃｈａｎｉｓｍｏｆｉｎｔ...     

Stabilization of over-stoichiometric Mn in layered Na2/3MnO2

Sodium manganates with nominal composition Na_2/3MnO₂ were prepared by solid state reaction between Na₂CO₃ and MnCO₃ at 1000 °C. The composition and structure of Na_xMnO₂ were controlled by the rate of cooling from the temperature of preparation. This is a consequence of the capability of Na_2/3MnO₂ to accommodate over‐stoichiometric Mn⁴⁺ ions up to 12.5%. Structural characterization was carried out by XRD powder diffractions, TEM analysis and Raman spectroscopy. The composition and oxidation state of manganese were determined by chemical analysis and magnetic susceptibility measurements. The manganese distribution in the layers was analysed using electron paramagnetic resonance (EPR) spectroscopy. By quenching from 1000 °C, the orthorhombic distorted modification is stabilized. A phase separation into orthorhombic and hexagonal modifications takes place when Na_2/3MnO₂ is slow cooled. The structure changes are concomitant with an increase in the oxidation state of Mn. The over‐stoichiometric Mn⁴⁺ ions are accommodated in the hexagonal modification by creation of vacancies in the MnO₂‐layers.     

EPR and optical absorption studies of Cr ions in d-gluconic acid monohydrate

EPR studies are carried out on Cr³⁺ ions doped in d-gluconic acid monohydrate (C₆H₁₂O₇·H₂O) single crystals at 77 K. From the observed EPR spectra, the spin Hamiltonian parameters g, |D| and |E| are measured to be 1.9919, 349 (×10⁻⁴) cm⁻¹ and 113 (×10⁻⁴) cm⁻¹, respectively. The optical absorption of the crystal is also studied at room temperature. From the observed band positions, the cubic crystal field splitting parameter Dq (2052 cm⁻¹) and the Racah interelectronic repulsion parameter B (653 cm⁻¹) are evaluated. From the correlation of EPR and optical data the nature of bonding of Cr³⁺ ion with its ligands is discussed.     

Spectral insights into microdynamics of thermoresponsive polymers from the perspective of two-dimensional correlation spectroscopy

Generalized two-dimensional correlation spectroscopy (2DCOS) and its derivate technique,perturbation correlation moving window (PCMW),have found great potential in studying a series of physico-chemical phenomena in stimuli-responsive polymeric systems.By spreading peaks along a second dimension,2DCOS can significantly enhance spectral resolution and discern the sequence of group dynamics applicable to various external perturbation-induced spectroscopic changes,especially in infrared (IR),near-infrared (NIR) and Raman spectroscopy.On the basis of 2DCOS synchronous power spectra changing,PCMW proves to be a powerful tool to monitor complicated spectral variations and to find transition points and ranges.This article reviews the recent work of our research group in the application of 2DCOS and PCMW in thermoresponsive polymers,mainly focused on liquid crystalline polymers and lower critical solution temperature (LCST)-type polymers.Details of group motions and chain conformational changes upon temperature perturbation can thus be elucidated at the molecular level,which contribute to the understanding of their phase transition nature.     

An EPR Study on Intramolecular Spin Exchange,Rotational Mobility of Nitroxides Linked by a Long-chain

The effects of pressure, solvent on the intramolecular spin exchange of biradicals having two nitroxide fragments linked by a long flexible chain were studied by means of highpressure EPR technique. It was found that the intramolecular exchange interaction between nitroxides of biradical took place through the direct contact between them. By analyzing the observed EPR spectra, we have estimated the ratio(Τ_in/Τ_out) value of the average lifetime of the radical fragments inside a cage(Τ_in) to that outside the cage(Τ_out). The Τ_in/Τ_out values decreased with decreasing temperature, increasing pressure. The results suggest that the nearly cyclic conformation in a cage is favorable in solution. Fur ther, the rotational correlation time of individual nitroxide was estimated from the anisotropic EPR signal,, the information on the segmental motion of the nitroxide group in biradical was obtained.     

Multiple‐Frequency and Variable‐Temperature EPR Study of Gadolinium(III) Complexes with Polyaminocarboxylates: Analysis and Comparison of the Magnetically Dilute Powder and the Frozen‐Solution Spectra

An electron paramagnetic resonance (EPR) study of glasses and magnetically dilute powders of [Gd(DTPA)(H₂O)]^2?, [Gd(DOTA)(H₂O)]^?, and macromolecular gadolinate(1?) complexes P792 was carried out at the X‐ and Q‐bands and at 240 GHz (DTPA=diethylenetriaminepentaacetato; DOTA=1,4,7,10‐tetraazacyclododecane‐1,4,7,10‐tetraacetato). The results show that the zero‐field splitting (ZFS) parameters for these complexes are quite different in a powder as compared to the frozen aqueous solution. In several complexes, an inversion of the sign of the axial component D of the zero field splitting is observed, indicating a significant structural change. In contrary to what was expected, powder samples obtained by lyophilization do not allow a more precise determination of the static ZFS parameters. The results obtained in glasses are more relevant to the problem of electron spin relaxation in aqueous solution than those obtained from powders.     

Single crystal EPR and optical studies of paramagnetic ions doped zinc potassium phosphate hexahydrate—Part II: VO(II)—a case of substitutional site

Single crystal electron paramagnetic resonance (EPR) studies were carried at room temperature for VO(II) doped zinc potassium phosphate hexahydrate. The results indicate that the paramagnetic impurity has entered the lattice only substitutionally, as confirmed by the single crystal rotations. The spin Hamiltonian parameters calculated from the spectra are g_//=1.9356, g=1.9764, A_//=200.9 G and A=76.5 G. The optical absorption spectrum exhibits three bands (800, 670 and 340 nm) suggesting the C_4v symmetry and the optical parameters evaluated are Dq=1492, Ds=−3854 and Dt=186 cm⁻¹.     

Dynamics from time series: Iteration maps in correlation space

The attractor for the dynamics of a complex system can be constructed from the time series measurement of a single variable. A recently proposed procedure is to construct a covariance matrix using an embedding window on the time series. An analysis of the meaning of the eigenvalues of the covariance matrix of the time series is undertaken here. It is argued that each principal eigenvalue can be decomposed into components which describe the time evolution of the correlations of the system along the given principal direction. A one-dimensional iterative map of these components can be constructed in correlation space. Such a map displays the regular or chaotic nature of the dynamics for each principal direction of the attractor. Illustrative examples of such maps are constructed for regular and random time series and for the Lorenz attractor.     

Application of two-dimensional near-infrared correlation spectroscopy to protein research

The purpose of the present paper is to demonstrate the potential of generalized two-dimensional (2D) near-infrared (NIR) correlation spectroscopy in studies of hydration and structure of proteins. We describe here two examples. The first example is concerned with heat denaturation process of ovalbumin in aqueous solutions and the second one deals with isomerizations with varying pH of serum albumin. New insight has been obtained into the hydration and unfolding process of secondary structures of ovalbumin and serum albumin by studying temperature- or pH-dependent correlation patterns in 2D synchronous and asynchronous spectra. Generalized 2D NIR correlation spectroscopy emphasizes spectral features not readily observable in conventional one-dimensional spectra, enabling to extract subtle but valuable structural changes concerning with the protein denaturation.