Comparative analysis of hydrogen bonding with participation of the nitrogen, oxygen and sulfur atoms in the 2(2'-heteroaryl)pyrroles and their trifluoroacetyl derivatives based on the 1H, 13C, 15N spectroscopy and DFT calculations

The N-H...X (X = N,O,S) intramolecular hydrogen bond in the series of 2(2'-heteroaryl)pyrroles and their trifluoroacetyl derivatives is examined by the (1)H, (13)C, (15)N spectroscopy and density functional theory (DFT) calculations. The influence of the hydrogen bond on coupling and shielding constants is considered. It is shown that the N-H...N intramolecular hydrogen bond causes a larger increase in the absolute size of the (1)J(N,H) coupling constant and a larger deshielding of the bridge proton than the N-H...O hydrogen bond. The effect of the N-H...S interaction on the (1)J(N,H) coupling constant and the shielding of the bridge proton is small. The NMR parameter changes in the series of the 2(2'-heteroaryl)pyrroles due to N-H...X hydrogen bond and the series of the 1-vinyl-2-(2'-heteroaryl)-pyrroles due to C-H...X hydrogen bond have the same order. The proximity of the nitrogen, oxygen or sulfur lone pair to the F...H hydrogen bridge quenches the trans-hydrogen bond spin-spin couplings (1h)J(F,H-1) and (2h)J(F,N).     

An experimental and theoretical study of spin-spin coupling in chlorosilanes

An experimental and theoretical study of the absolute value of the one-bond spin-spin coupling constant |(1)J(Si,H)| in SiH(n)Cl(4-n) (n = 0-4) dissolved in THF-d(8) is presented. We found |(1)J(Si,H)| to increase with an increasing number of chlorine substituents, and the quantitative changes were found to differ from the values previously reported for the same compounds dissolved in cyclohexane-d(12). We also report on the variations in |(1)J(Si,H)| as a function of temperature, which we found to be linearly temperature dependent for the chlorine-substituted silanes and temperature independent for SiH(4). Furthermore, the temperature dependence of |(1)J(Si,H)| varied between the different chlorosilanes. Solvent-solute interactions were studied by quantum chemical DFT calculations. The variations in chloro-silane bond lengths upon adduct formation and the different adduct interaction energies may explain the temperature dependences of the coupling constants.     

Ab initio study of complexes with two cations as N-H donors to F-: structures and spin-spin coupling constants across N-H-F hydrogen bonds

A systematic ab initio study has been carried out to determine the MP2/6-31+G(d,p) structures and EOM-CCSD coupling constants across N-H-F-H-N hydrogen bonds for a series of complexes F(H(3)NH)(2)(+), F(HNNH(2))(2)(+), F(H(2)CNH(2))(2)(+), F(HCNH)(2)(+), and F(FCNH)(2)(+). These complexes have hydrogen bonds with two equivalent N-H donors to F(-). As the basicity of the nitrogen donor decreases, the N-H distance increases and the N-H-F-H-N arrangement changes from linear to bent. As these changes occur and the hydrogen bonds between the ion pairs acquire increased proton-shared character, (2h)J(F)(-)(N) increases in absolute value and (1h)J(H)(-)(F) changes sign. F(H(3)NH)(2)(+) complexes were also optimized as a function of the N-H distance. As this distance increases and the N-H...F hydrogen bonds change from ion-pair to proton-shared to traditional F-H...N hydrogen bonds, (2h)J(F)(-)(N) initially increases and then decreases in absolute value, (1)J(N)(-)(H) decreases in absolute value, and (1h)J(H)(-)(F) changes sign. The signs and magnitudes of these coupling constants computed for F(H(3)NH)(2)(+) at short N-H distances are in agreement with the experimental signs and magnitudes determined for the F(collidineH)(2)(+) complex in solution. However, even when the N-H and F-H distances are taken from the optimized structure of F(collidineH)(2)(+), (2h)J(F)(-)(N) and (1h)J(H)(-)(F) are still too large relative to experiment. When the distances extracted from the experimental NMR data are used, there is excellent agreement between computed and experimental coupling constants. This suggests that the N-H-F hydrogen bonds in the isolated gas-phase F(collidineH)(2)(+) complex have too much proton-shared character relative to those that exist in solution.     

Systematic ab initio study of 15N-15N and 15N-1H spin-spin coupling constants across N-H+-N hydrogen bonds: predicting N-N and N-H coupling constants and relating them to hydrogen bond type

A systematic ab initio EOM-CCSD study of 15N-15N and 15N-1H spin-spin coupling constants has been carried out for a series of complexes formed from 11 nitrogen bases with experimentally measured proton affinities. When these complexes are arranged in order of increasing proton affinity of the proton-acceptor base and, for each proton acceptor, increasing order of proton affinity of the protonated N-H donor, trends in distances and signs of coupling constants are evident that are indicative of the nature of the hydrogen bond. All two-bond spin-spin coupling constants (2hJ(N-N)) are positive and decrease as the N-N distance increases. All one-bond N-H coupling constants (1J(N-H)) are negative (1K(N-H) are positive). 1J(N-H) is related to the N-H distance and the hybridization of the donor N atom. One-bond H...N coupling constants (1hJ(H-N)) are positive (1hK(H-N) are negative) for traditional hydrogen bonds, but 1hJ(H-N) becomes negative when the hydrogen bond acquires sufficient proton-shared character. The N-N and H...N distances at which 1hJ(H-N) changes sign are approximately 2.71 and 1.62 A, respectively. Predictions are made of the values of 2hJ(N-N) and 1J(N-H), and the signs of 1hJ(H-N), for those complexes that are too large for EOM-CCSD calculations.     

Through hydrogen-bond vibrational coupling in hydrogen-bonding chains of 4-pyridones with implications for peptide amide I absorptions: density functional theory compared with transition dipole coupling

We present B3LYP/D95** calculations on the C=O and N-H couplings in H-bonded chains of 4-pyridones. 14C-substitutions are used to decouple various vibrations for purposes of illustration. The coupled C=O vibrations bear analogy to the amide I bands of proteins and peptides. The coupling of the C=O's occurs primarily via the cooperative H-bonds rather than transition dipole coupling (TDC), as demonstrated by the fact that (1) the couplings are greater than previously reported for similar studies on formamides despite the larger distance between the C=O's in the pyridone chains (TDC coupling decreases with distance) and (2) the red shifts (also greater than for formamides) can be attributed to the changes in the geometries (particularly the C=O bond lengths) of the individual 4-pyridones in the H-bonding chains induced by the H-bonds and resulting polarization of the monomers.     

Theoretical study of the scalar coupling constants across the noncovalent contacts in RNA base pairs: the cis- and trans-watson-crick/sugar edge base pair family

The structure and function of RNA molecules are substantially affected by non-Watson-Crick base pairs actively utilizing the 2'-hydroxyl group of ribose. Here we correlate scalar coupling constants across the noncovalent contacts calculated for the cis- and trans-WC/SE (Watson-Crick/sugar edge) RNA base pairs with the geometry of base to base and sugar to base hydrogen bond(s). 23 RNA base pairs from the 32 investigated were found in RNA crystal structures, and the calculated scalar couplings are therefore experimentally relevant with regard to the binding patterns occurring in this class of RNA base pairs. The intermolecular scalar couplings 1hJ(N,H), 2hJ(N,N), 2hJ(C,H), and 3hJ(C,N) were calculated for the N-H...N and N-H...O=C base to base contacts and various noncovalent links between the sugar hydroxyl and RNA base. Also, the intramolecular 1J(N,H) and 2J(C,H) couplings were calculated for the amino or imino group of RNA base and the ribose 2'-hydroxyl group involved in the noncovalent interactions. The calculated scalar couplings have implications for validation of local geometry, show specificity for the amino and imino groups of RNA base involved in the linkage, and can be used for discrimination between the cis- and trans-WC/SE base pairs. The RNA base pairs within an isosteric subclass of the WC/SE binding patterns can be further sorted according to the scalar couplings calculated across different local noncovalent contacts. The effect of explicit water inserted in the RNA base pairs on the magnitude of the scalar couplings was calculated, and the data for discrimination between the water-inserted and direct RNA base pairs are presented. The calculated NMR data are significant for structural interpretation of the scalar couplings in the noncanonical RNA base pairs.     

A DFT study of the interresidue dependencies of scalar J-coupling and magnetic shielding in the hydrogen-bonding regions of a DNA triplex.

Scalar coupling constants and magnetic shieldings in the imino hydrogen-bonding region of Hoogsteen-Watson-Crick T.A-T and C(+).G-C triplets have been calculated as a function of the distance between proton donor and acceptor nitrogen atoms. The Fermi contact contributions to (h2)J((15)N-H...(15)N), (1)J((15)N-(1)H), and (h1)J((1)H...(15)N) were computed using density functional theory/finite perturbation theory (DFT/FPT) methods for the full base triplets at the unrestricted B3PW91/6-311G level. Chemical shifts delta((1)H) and delta((15)N) were obtained at the same level using the gauge including atomic orbital (GIAO) method for magnetic shielding. All three scalar couplings and all three chemical shifts are strongly interrelated and exhibit monotonic changes with base pair separation. These correlations are in conformity with experimental data for a 32-nucleotide DNA triplex. The results suggest that both chemical shifts and coupling constants can be used to gain information on H-bond donor-acceptor distances in nucleic acids. In addition to the DFT/FPT calculations, a simple three-orbital model of the N-H...H bond and a sum-over-states analysis is presented. This model reproduces the basic features of the H-bond coupling effect. In accordance with this model and the DFT calculations, a positive sign for the (h2)J(NN) coupling is determined from an E.COSY experiment.     

Scalar Coupling between the 15N Centres in Methylated 1,8‐Diaminonaphthalenes and 1,6‐Diazacyclodecane: To What Extent is 2HJNN a Reliable Indicator of N?N Distance?

The scalar couplings between hydrogen bonded nitrogen centres ((2H)J(NN)) in the free-base and protonated forms of the complete series of [(15)N(2)]-N-methylated 1,8-diamino naphthalenes in [D(7)]DMF solution have been determined, either directly (15N[1H] NMR), or, indirectly (13C[1H] NMR and simulation of the X part of the ABX spectrum (X=13C, A,B=15N)). Additionally, the (2H)J(NN) value in the HBF(4) salt of [(15)N(2)]-1,6-dimethyl-1,6-diazacyclodecane was determined, indirectly by 13C[(1H] NMR spectroscopy. As confirmed by DFT calculations and by reference to CSD, the rigid nature of the naphthalene scaffold results in rather low deviations in N,N distance or H-N,N angle within each series, apart from the free base of the permethylated compound (proton sponge) where the naphthalene ring is severely distorted to relieve strain. Despite such restrictions, the (2H)J(NN) values increase smoothly from 1.5 to 8.5 Hz in the protonated series as the degree of methylation increases. The effect in the free-base forms is much less pronounced (2.9 to 3.7 Hz) with no scalar N,N coupling detected in the permethylated compound (proton sponge) due to the lack of hydrogen bond between the N,N centres. Neither the pK(a) nor the N-N distance in the protonated forms correlates with (2H)J(NN). However, the sum of the (13)C NMR shifts of the naphthalene ring C(1,8) carbons which are attached directly to the nitrogen centres correlates linearly with (2H)J(NN) and with the degree of methylation. The gas-phase computed (2H)J(NN) is almost constant throughout the homologous series, and close to the experimental value for the tetramethylated ion. However, the computed coupling constant is attenuated in structures involving microsolvation of each N-H unit, and the trend then matches experiment. These experimental and computational observations suggest that Fermi contact between the two N centres is decreased upon formation of strong charge-dispersing intermolecular hydrogen bonds of the free N-H groups with the solvent.     

(3h)J((15)N-(31)P) spin-spin coupling constants across N[bond]H....O[bond]P hydrogen bonds

Equation-of-motion coupled cluster singles and doubles (EOM-CCSD) calculations have been performed to evaluate three-bond (15)N-(31)P coupling constants ((3h)J(N[bond]P)) across N[bond]H....O[bond]P hydrogen bonds in model cationic and anionic complexes including NH(4)(+):OPH, NH(4)(+):OPH(3), NH(3):(-)O(2)PH(2), NFH(2):(-)O(2)PH(2), and NF(2)H:(-)O(2)PH(2). Three-bond coupling constants can be appreciable when the phosphorus is P(V), but are negligible with P(III). (3h)J(N[bond]P) values in complexes with cyclic or open structures are less than 1 Hz, a consequence of the nonlinear arrangement of N, H, O, and P atoms. For complexes with these structures, (3h)J(N[bond]P) may not be experimentally measurable. In contrast, complexes in which the N, H, O, and P atoms are collinear or nearly collinear have larger values of (3h)J(N[bond]P), even though the N[bond]P distances are longer than N[bond]P distances in cyclic and open structures. In linear complexes, (3h)J(N[bond]P) is dominated by the Fermi-contact term, which is distance dependent. Therefore, N[bond]P (and hydrogen-bonding N[bond]O) distances in these complexes can be determined from experimentally measured (15)N-(31)P coupling constants.     

Theoretical NMR spectroscopic analysis of the intramolecular proton transfer mechanism in ortho-hydroxyaryl (Un-)substitued Schiff bases

Both NMR spectroscopic parameters are calculated as a function of the distance d(N-H) of the O...H...N subsystem of (un- or Z-) substituted ortho-hydroxyaryl Schiff bases, with Z = 4-OMe and 5-Cl. Typical patterns for NMR J couplings and magnetic shieldings, sigma(N) (or the chemical shift delta(N)), are obtained showing that they are reliable sensors from which one can get a deeper insight on the intramolecular proton transfer mechanism. An inflection point is found by representing each NMR spectroscopic parameter as a function of d(N-H) or when the correlation between both parameters is depicted. The analysis of these (cubic) functions shows whether the proton is bound to the oxygen or to the nitrogen atom or is shared by both atoms. In line with these findings, it is possible to predict the position of the proton in the bridge. These theoretical findings are supported by previous experimental measurements. It is shown that nitrogen chemical shift is quite sensitive to substituent effects though (1) J( (15)NH) is not. This last parameter depends on d(NH). When correlating both spectroscopic parameters, a previous delta(N) vs (1) J( (15)NH) linear dependence is generalized to a cubic dependence which seems to be more reliable. Calculations are based on two state of the art methodologies: DFT-B3LYP and polarization propagators at second order of approach (SOPPA) with large enough basis sets.     

Density functional theory calculations of hydrogen-bond-mediated NMR J coupling in the solid state

A recently developed method for calculating NMR J coupling in solid-state systems is applied to calculate hydrogen-bond-mediated (2h) J NN couplings across intra- or intermolecular N-H...N hydrogen bonds in two 6-aminofulvene-1-aldimine derivatives and the ribbon structure formed by a deoxyguanosine derivative. Excellent quantitative agreement is observed between the calculated solid-state J couplings and those previously determined experimentally in two recent spin-echo magic-angle-spinning NMR studies ( Brown, S. P. ; et al. Chem. Commun. 2002, 1852-1853 and Pham, T. N. ; et al. Phys. Chem. Chem. Phys. 2007, 9, 3416-3423 ). For the 6-aminofulvene-1-aldimines, the differences in (2h) J NN couplings in pyrrole and triazole derivatives are reproduced, while for the guanosine ribbons, an increase in (2h) J NN is correlated with a decrease in the N-H...N hydrogen-bond distance. J couplings are additionally calculated for isolated molecules of the 6-aminofulevene-1-aldimines extracted from the crystal with and without further geometry optimization. Importantly, it is shown that experimentally observed differences between J couplings determined by solution- and solid-state NMR are not solely due to differences in geometry; long-range electrostatic effects of the crystal lattice are shown to be significant also. J couplings that are yet to be experimentally measured are calculated. Notably, (2h) J NO couplings across N-H...O hydrogen bonds are found to be of a similar magnitude to (2h) J NN couplings, suggesting that their utilization and quantitative determination should be experimentally feasible.     

Evaluation of backbone proton positions and dynamics in a small protein by liquid crystal NMR spectroscopy

NMR measurements of a large set of protein backbone one-bond dipolar couplings have been carried out to refine the structure of the third IgG-binding domain of Protein G (GB3), previously solved by X-ray crystallography at a resolution of 1.1 A. Besides the commonly used bicelle, poly(ethylene glycol), and filamentous phage liquid crystalline media, dipolar couplings were also measured when the protein was aligned inside either positively or negatively charged stretched acrylamide gels. Refinement of the GB3 crystal structure against the (13)C(alpha)-(13)C' and (13)C'-(15)N dipolar couplings improves the agreement between experimental and predicted (15)N-(1)H(N) as well as (13)C(alpha)-(1)H(alpha) dipolar couplings. Evaluation of the peptide bond N-H orientations shows a weak anticorrelation between the deviation of the peptide bond torsion angle omega from 180 degrees and the angle between the N-H vector and the C'-N-C(alpha) plane. The slope of this correlation is -1, indicating that, on average, pyramidalization of the peptide N contributes to small deviations from peptide bond planarity ( = 179.3 +/- 3.1 degrees ) to the same degree as true twisting around the C'-N bond. Although hydrogens are commonly built onto crystal structures assuming the N-H vector orientation falls on the line bisecting the C'-N-C(alpha) angle, a better approximation adjusts the C(alpha)-C'-N-H torsion angle to -2 degrees. The (15)N-(1)H(N) dipolar data do not contradict the commonly accepted motional model where angular fluctuations of the N-H bond orthogonal to the peptide plane are larger than in-plane motions, but the amplitude of angular fluctuations orthogonal the C(alpha)(i-1)-N(i)-C(alpha)(i) plane exceeds that of in-plane motions by at most 10-15 degrees. Dipolar coupling analysis indicates that for most of the GB3 backbone, the amide order parameters, S, are highly homogeneous and vary by less than +/-7%. Evaluation of the H(alpha) proton positions indicates that the average C(alpha)-H(alpha) vector orientation deviates by less than 1 degrees from the direction that makes ideal tetrahedral angles with the C(alpha)-C(beta) and C(alpha)-N vectors.     

Infrared depletion spectra of 2-aminopyridine2-pyridone, a Watson-Crick mimic of adenine.uracil

The 2-aminopyridine2-pyridone (2AP2PY) dimer is linked by N-H...O=C and N-H...N hydrogen bonds, providing a model for the Watson-Crick hydrogen bond configuration of the adenine.thymine and adenine.uracil nucleobase pairs. Mass-specific infrared spectra of 2AP2PY and its seven N-H deuterated isotopomers have been measured between 2550 and 3650 cm(-1) by IR laser depletion combined with UV two-color resonant two-photon ionization. The 2PY amide N-H stretch is a very intense band spread over the range 2700-3000 cm(-1) due to large anharmonic couplings. It is shifted to lower frequency by 710 cm(-1) or approximately 20% upon H bonding to 2AP. On the 2AP moiety, the "bound" amino N-H stretch gives rise to a sharp band at 3140 cm(-1), which is downshifted by 354 cm(-1) or approximately 10% upon H bonding to 2PY. The amino group "free" N-H stretch and the H-N-H bend overtone are sharp bands at approximately 3530 cm(-1) and 3320 cm(-1). Ab initio structures and harmonic vibrations were calculated at the Hartree-Fock level and with the PW91 and B3LYP density functionals. The PW91/6-311++G(d,p) method provides excellent predictions for the frequencies and IR intensities of all the isotopomers.     

Density functional theory study of the properties of N-H...N, non-cooperativities, and intermolecular interactions in linear trans-diazene clusters up to ten molecules

We investigate aspects of N-H...N hydrogen bonding in the linear trans-diazene clusters (n=2-10) such as the N...H and N-H lengths, n(N) --> sigma(N-H) interactions, N...H strengths, and frequencies of the N-H stretching vibrations utilizing the DFT/B3LYP theory, the natural bond orbital (NBO) method, and the theory of atoms in molecules (AIM). Our calculations indicate that the structure and energetics are qualitatively different from the conventional H-bonded systems, which usually exhibit distinct cooperative effects, as cluster size increases. First, a shortening rather than lengthening of the N-H bond is found and thus a blue rather than red shift is predicted. Second, for the title clusters, any sizable cooperative changes in the N-H and N...H lengths, n(N) --> sigma(N-H) charge transfers, N...H strengths, and frequencies of the N-H stretching vibrations for the linear H-bonded trans-diazene clusters do not exist. Because the n(N) --> sigma(N-H) interaction hardly exhibits cooperative effects, the capability of the linear trans-diazene cluster to localize electrons at the N...H bond critical point is almost independent of cluster size and thereby leads to the noncooperative changes in the N...H lengths and strengths and the N-H stretching frequencies. Third, the dispersion energy is sizable and important; more than 30% of short-range dispersion energy not being reproduced by the DFT leads to the underestimation of the interaction energies by DFT/B3LYP. The calculated nonadditive interaction energies show that, unlike the conventional H-boned systems, the trans-diazene clusters indeed exhibit very weak nonadditive interactions.     

Characterizing hydrogen bonding and proton transfer in 2:1 FH:NH3 and FH:collidine complexes through one- and two-bond spin-spin coupling constants across hydrogen bonds

Ab initio equation-of-motion coupled cluster singles and doubles calculations have been carried out on a variety of 2:1 FH:NH(3) complexes (F(b)H(b):F(a)H(a):NH(3)) to investigate the effects of structural changes on one- and two-bond spin-spin coupling constants across F(a)-H(a)-N and F(b)-H(b)-F(a) hydrogen bonds and to provide insight into experimentally measured coupling constants for 2:1 FH:collidine (2:1 FH:2,4,6-trimethylpyridine) complexes. Coupling constants have been computed for 2:1 FH:NH(3) equilibrium structures and proton-transferred perpendicular and open structures at 2:1 FH:NH(3), FH:pyridine, and FH:collidine geometries. (2h)J(Fa)(-)(N), (1)J(Fa)(-)(Ha), and (1h)J(Ha)(-)(N) exhibit expected dependencies on distances, angles, and the nature of the nitrogen base. In contrast, one- and two-bond coupling constants associated with the F(b)-H(b)-F(a) hydrogen bond, particularly (2h)J(F)()b(-)(F)()a, vary significantly depending on the F-F distance, the orientation of the hydrogen-bonded pair, and the nature of the complex (HF dimer versus the anion FHF(-)). The structure of the 2:1 FH:collidine complex proposed on the basis of experimentally measured coupling constants is supported by the computed coupling constants. This study of the structures of open proton-transferred 2:1 FH:NH(3), FH:pyridine, and FH:collidine complexes and the coupling constants computed for 2:1 FH:NH(3) complexes at these geometries provides insight into the role of the solvent in enhancing proton transfer across both N-H(a)-F(a) and F(b)-H(b)-F(a) hydrogen bonds.     

One-bond 1J(15N,H) coupling constants at sp2-hybridized nitrogen of Schiff bases,enaminones and similar compounds: A theoretical study

¹J(¹⁵N,H) coupling constants for enaminones and NH-forms of intramolecularly hydrogen-bonded Schiff bases as model compounds for sp²-hybridized nitrogen atoms are evaluated using density functional theory (DFT) to find the optimal functionals and basis sets. Ammonia is used as a test molecule and its one-bond coupling constant is compared with experiment. A methylamine Schiff base of a truncated molecule of gossypol is used for checking the performance of selected B3LYP, O3LYP, PBE, BHandH, and APFD density functionals and standard, modified, and dedicated basis sets for coupling constants. Both in vacuum and in chloroform, modeled by the simple continuum model of solvent, the modified basis sets predict significantly better the ¹J(¹⁵N,H) value in ammonia and in the methylamine Schiff base of a truncated molecule of gossypol than the standard basis sets. This procure is then used on a broad set of intramolecularly hydrogen-bonded molecules, and a good correlation between calculated and experimental one-bond NH coupling constants is obtained. The ¹J(¹⁵N,H) couplings are slightly overestimated. The calculated data show for hydrogen-bonded NH interatomic distances that the calculated values depend on the NH bond lengths. The shorter the bond lengths, the larger the ¹J(¹⁵N,H). A useful correlation between ¹J(¹⁵N,H) and NH bond length is derived that enables realistic predictions of one-bond NH coupling constants. The calculations reproduce experimentally observed trends for the studied molecules.     

Characterizing the cooperativity in H-bonded amino structures

Density functional theory calculations were used to examine the effect of H-bond cooperativity on the magnitude of the NMR chemical shifts and spin-spin coupling constants in a C4h-symmetric G-quartet and in structures consisting of six cyanamide monomers. These included two ring structures (a planar C6h-symmetric structure and a nonplanar S6-symmetric structure) and two linear chain structures (a fully optimized planar Cs-symmetric chain and a planar chain structure where all intra- and intermolecular parameters were constrained to be identical). The NMR parameters were computed for the G-quartet and cyanamide structures, as well as for shorter fragments derived from these assemblies without reoptimization. In the ring structures and the chain with identical monomers, the intra- and intermolecular geometries of the cyanamides were identical, thereby allowing the study of cooperative effects in the absence of geometry changes. The magnitude of the |1JNH| coupling, 1H and 15N chemical shifts of the H-bonding amino N-H group, and the |h2JNN| H-bond coupling increased, whereas the size of the |1JNH| coupling of the non-H-bonded amino N-H bonds of the first amino group in the chain, which are roughly perpendicular to the H-bonding network, decreased in magnitude when H-bonding monomers were progressively added to extending ring or chain structures. These effects are attributed to electron redistribution induced by the presence of the nearby H-bonding guanine or cyanamide molecules.     

Electron bridging dihydrogen bond in the imidazole-contained anion derivatives

The large contact distance of electron bridging dihydrogen bond (EBDB), which is over 2.4 A, is the most prominent characteristic for the imidazole-contained anion derivatives. The elongation of N-H bond and the shortening of H...H distance can be observed upon hydration and hydrogenation. Transformation from EBDB to dissociative H2 is convenient upon sequential hydrogenation. The H...H distance decreases with the enhancement of the electronegativity of the heavy atom which contacts directly with one of these two hydrogen atoms. NMR shielding of the bonding N varies significantly upon hydration and hydrogenation. The spin-spin coupling constants, 1J(H-H), is dominated predominantly by the paramagnetic spin-orbit and diamagnetic spin-orbit contributions instead of the Fermi-contact term. Enhancement of electronegativity of the heavy atom leads to the increase of 1J(H-H) coupling constants. The stabilization is enhanced upon hydration predominantly for the formation of O-H...N H bond, while it is reversed upon hydrogenation for the cleavage of big pi bond, Pi5(6). Enhancement of the stability is demonstrated by the increase of stabilization energy and vertical electron detachment energy with the electronegativity of the heavy atom. The dominant contributions for the formation of such electron bridging dihydrogen bond are the high polarity of each fragment, large electron density between two fragments, and strong bonding interaction of the bridging electron with H(N) atoms. The H...H interaction can be formed by X-Hdelta+ and Hdelta- -Y polar molecules in Hdelta+...Hdelta- and Hdelta+...e...Hdelta+ of two forms.     

Theoretical study of properties of H bonds and intermolecular interactions in linear cis-,trans-cyclotriazane clusters (n = 2-8)

Our calculations based upon Becke's three-parameter functional of density-functional theory (DFT) with the correlation of Lee, Yang, and Parr (B3LYP), natural bond orbital, and atoms in molecule indicate that in drastic contrast to most H-bonded systems, the anticooperative and cooperative effects coexist in the linear H-bonded cis-,trans (c,t)-cyclotriazane clusters (n = 2-8). As cluster size increases, the properties along the H-bonded chains at trans-positions take on the unexpectedly anticooperative changes which are reflected in elongation of the N...H hydrogen bonds, frequency blueshift in the N-H stretching vibrations, decay in the n(N)-->sigma*(N-H) charge transfers, and weakening of strengths of the N...H bonds. And the cooperative changes in the corresponding properties for the cis- H-bonded chains are observed to be concurrent with the anticooperativities. The rise and fall in the n(N)-->sigma*(N-H) interactions cause increment and decrement in capacities of the clusters to concentrate electrons at the bond critical points of the N...H bonds, and thereby leading to the cooperative and the anticooperative changes especially in the N...H lengths and the N-H stretching frequencies. In terms of three-body symmetry-adapted perturbation theory (three-body SAPT), the first exchange nonadditivity plays a more important role in stabilizing trimer than the nonadditive induction. However, the dominance of the first exchange nonadditivity in three-body interaction unexpectedly triggers the anticooperative effect that counteracts the concurrent cooperative effect. According to the SAPT(DFT), which is a combination of SAPT with asymptotically corrected DFT, DFT/B3LYP is able to succeed in describing the electrostatic, exchange, and induction components, but fails to yield satisfactory interaction energies due to the fact that about 40% of short-range dispersion energy is neglected by the DFT, which is different from many H-bonded described well by the DFT. A quantum cluster equilibrium model illustrates that the c,t-cyclotriazane liquid phase exhibits a weak cooperative effect.