Complexes of C60 fullerene with simple donor molecules: Theoretical study

The complex formation between fullerene C60 and simple donor molecules such as dimethyl ether, dimethylamine, dimethylsulfide, furan, pyrrole, and thiophene has been studied applying the hybrid MP2/6‐31G(d′):PM3 ONIOM approach for geometry optimization. Local implementation of Møller–Plesset perturbation theory in combination with 6‐31G(d) and 6‐311G(d,p) basis sets was used for binding energies estimation of fullerene complexes. Two factors were found to contribute most to the complex stability: the polarizability and molecular volume of donor molecule. As follows from positive stabilization energies at the Hartree–Fock level, the stabilization of fullerene complexes is entirely due to dispersion interactions in accordance with available experimental data. The calculations show that for donors of similar molecular volume the binding energy of molecular complex increases with polarizability of donor molecules. Similarly, for such complexes the partial charges on molecules increase with decreasing of ionization potentials of donor molecules. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem, 2002     

Direct Measurement of Repulsive van der Waals Interactions Using an Atomic Force Microscope

The forces of interaction between a flat poly(tetrafluoroethylene) (PTFE) surface and gold spheres (of radii 3–8 μm) were measured as a function of apparent surface separation for different intervening media. For air, fluorinated alkanes, and polar liquids the interaction between the surfaces was found to be attractive. With intervening liquids of low-polarity the interaction was found to be repulsive. This repulsion is attributed to a negative composite Hamaker coefficient leading to van der Waals repulsion.     

Dispersion Interaction Stabilizes Sterically Hindered Double Fullerenes

By state‐of‐the‐art quantum chemical methods, we show that for bulky functional groups like cyclohexane, [20]fullerene, dodecahedrane, and C₆₀, the attractive dispersion interaction can have a greater impact on stereochemistry than the repulsive steric effect, making the compact isomer the more stable one. In particular, for the double C₆₀ adduct of pentacene 1 , the syn isomer should be the main product instead of the anti one inferred in the original synthesis experiment (Y. Murata et al., J. Org. Chem.­ 1999 , 64, 3483). With and without dispersion interactions taken into account, the Gibbs energy difference ΔG(syn?anti) is ?6.36 and +1.15 kcal mol^?1, respectively. This study reminds us that dispersion interactions as well as electrostatic or hyperconjugation effects, etc. can lead to some unusual stereochemical phenomena.     

Synthesis of thermoplastic curdlan alkyl carbamates having hydrogen bonding ability

Rigid and little moldable curdlan, a linear β-1,3-glucan having intra- and interchain hydrogen bonds, was reacted with several alkyl isocyanates, which gave thermoplastic curdlan alkyl carbamates (CrdC) with degree of substitution about 2. The alkyl carbamation at hydroxy groups in the glucan skeleton effectively broke the interchain hydrogen bonds of curdlan and increased flexibility of CrdC, while the newly formed carbamate moieties could moderately keep the hydrogen bonding ability in CrdC. Elongating the alkyl groups in the carbamate side chains increased solubility in organic solvents and thermoplasticity of CrdC, which enabled to make homogeneous and free-standing films by both methods of solution-casting and hot-pressing.     

Wraparound hosts for fullerenes: tailored macrocycles and cages

Custom-made macrocyclic receptors for fullerenes are proving a valuable alternative to achieve the affinity and selectivity required to meet challenges such as the selective extraction of higher fullerenes, their chiral resolution, or the self-assembly of functional molecular materials. In this Minireview, we highlight some of the important breakthroughs that this class of fullerene hosts has already produced.     

Lennard-Jones parameters for small diameter carbon nanotubes and water for molecular mechanics simulations from van der Waals density functional calculations

Lennard-Jones (LJ) parameters are derived for classical nonpolarizable force fields for carbon nanotubes (CNTs) and for CNT-water interaction from van der Waals (vdW) enhanced density functional calculations. The new LJ parameters for carbon-carbon interactions are of the same order as those previously used in the literature but differ significantly for CNT-water interactions. This may partially originate from the fact that in addition to pure vdW interactions the polarization and other quantum mechanics effects are embedded into the LJ-potential.     

Geometry and stability of fullerene cages: C24 to C70

The electronic structures and geometries of all even carbon fullerenes were investigated theoretically using density functional theory (DFT) at the B3LYP/6‐31G* level. Based on geometries, energies, and aromaticities, the potential relationship between geometry factors and stability has been investigated systematically. The extra stability of C₆₀ has been confirmed by the shorter average bond length, smaller angle strain, widest energy gap, larger binding energy, and dissociation energy. Furthermore, C₃₂ and C₅₀ are predicted to have higher aromaticity due to larger negative nucleus independent chemical shift (NICS) values, whereas C₆₀ displays a weak aromaticity. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Efficient optimization of van der Waals parameters from bulk properties

Due to the computational cost involved, when developing a force field for new compounds, one often avoids fitting van der Waals (vdW) terms, instead relying on a general force field based on the atom type. Here, we provide a novel approach to efficiently optimize vdW terms, based on both ab initio dimer energies and condensed phase properties. The approach avoids the computational challenges of searching the parameter space by using an extrapolation method to obtain a reliable difference quotient for the parameter derivatives based on the central difference. The derivatives are then used in an active‐space optimization method which convergences quadratically. This method is applicable to polarizable and nonpolarizable force fields, although we focus on the parameterization of the AMBER force field. The scaling of the electrostatic potential (ESP) of the compounds is also studied. The algorithm is tested on 12 compounds, reducing the root mean squared error (RMSE) of the density from 0.061 g/cm³ with GAFF parameters to 0.004 g/cm³, and the heat of vaporization from 1.13 to 0.05 kcal/mol. This is done with only four iterations of molecular dynamic runs. Using the optimized vdW parameters, the RMSE of the self‐diffusion was reduced from 1.22 × 10^?9 to 0.78 × 10^?9 m² s^?1 and the RMSE of the hydration free energies was reduced from 0.30 to 0.26 kcal/mol. Scaling the ESP to improve dimer energies resulted in the RMSE improving to 0.77× 10^?9 m² s^?1, but the worsened to 0.33 kcal/mol. © 2013 Wiley Periodicals, Inc.     

Optimized Liquid-Phase Exfoliation of Magnetic van der Waals Heterostructures: Towards the Single Layer and Deterministic Fabrication of Devices

Van der Waals magnetic materials are promising candidates for spintronics and testbeds for exotic magnetic phenomena in low dimensions. The two-dimensional (2D) limit in these materials is typically reached by mechanically breaking the van der Waals interactions between layers. Alternative approaches to producing large amounts of flakes rely on wet methods such as liquid-phase exfoliation (LPE). Here, we report an optimized route for obtaining monolayers of magnetic cylindrite by LPE. We show that the selection of exfoliation times is the determining factor in producing a statistically significant amount of monolayers while keeping relatively big flake areas (~1 µm²). We show that the cylindrite lattice is preserved in the flakes after LPE. To study the electron transport properties, we have fabricated field-effect transistors based on LPE cylindrite. Flakes are deterministically positioned between nanoscale electrodes by dielectrophoresis. We show that dielectrophoresis can selectively move the larger flakes into the devices. Cylindrite nanoscale flakes present a p-doped semiconducting behaviour, in agreement with the mechanically exfoliated counterparts. Alternating current (AC) admittance spectroscopy sheds light on the role played by potential barriers between different flakes in terms of electron transport properties. The present large-scale exfoliation and device fabrication strategy can be extrapolated to other families of magnetic materials.     

The crystal and molecular structure of N-(17-methoxy-phenyl)-2-chloropyrrolo (2,3- b ) quinoline

N-(17-methoxy-phenyl)-2-chloropyrrolo (2,3-b) quinoline was solved by direct methods and refined to anR of 0.104 for 950 observed reflections. The intensity data were collected by the multiple film equi-inclination Weissenberg technique and estimated visually. The packing of the molecule is stabilised by van der Waals interaction. The pyrrolo (2,3-b) quinoline ring system is planar and the methoxy phenyl ring is approximately perpendicular to the plane of this ring system with a dihedral angle of 86.5°.     

Accurate van der Waals force field for gas adsorption in porous materials

An accurate van der Waals force field (VDW FF) was derived from highly precise quantum mechanical (QM) calculations. Small molecular clusters were used to explore van der Waals interactions between gas molecules and porous materials. The parameters of the accurate van der Waals force field were determined by QM calculations. To validate the force field, the prediction results from the VDW FF were compared with standard FFs, such as UFF, Dreiding, Pcff, and Compass. The results from the VDW FF were in excellent agreement with the experimental measurements. This force field can be applied to the prediction of the gas density (H₂, CO₂, C₂H₄, CH₄, N₂, O₂) and adsorption performance inside porous materials, such as covalent organic frameworks (COFs), zeolites and metal organic frameworks (MOFs), consisting of H, B, N, C, O, S, Si, Al, Zn, Mg, Ni, and Co. This work provides a solid basis for studying gas adsorption in porous materials. © 2017 Wiley Periodicals, Inc.     

Bosonic helium clusters doped by alkali metal cations: interaction forces and analysis of their most stable structures

Ab initio potentials are computed for alkali metal cationic partners interacting with ⁴He and an overall many-body potential is constructed for each of the ionic dopants in helium clusters. The structures are then obtained via a genetic algorithm approach and results compared with Basin-Hopping Monte Carlo simulations. The classical arrangements are analyzed and quantum effects discussed in comparison with what has been found with Diffusion Monte Carlo calculations. Further corrections to the classical picture by including three-body forces and radial delocalization of the helium adatoms are also considered and their effects analyzed. This work is dedicated to the late Nando Bernardi, an eclectic and gifted scientist and a dear friend whose early departure has left a sad void in our community.     

Forces controlling protein interactions: theory and experiment

This work reviews both the theory and experimental measurements of the fundamental forces that control protein solution behavior. In addition to the Derjaguin–Landau–Verwey–Overbeek (DLVO) forces, we also discuss the relative importance of hydrodynamic, solvation, and lock-and-key interactions in controlling protein solution behavior. The more common computational methods used to calculate both electrostatic and van der Waals potentials are described. Particular attention is given to the differences between proteins and ideal colloidal particles, and the computational methods used to address those differences. In addition to theoretical investigations of protein interactions, the results of recent direct measurements of the forces governing protein interactions are reviewed. These experimental results provide not only measurements against which the theories can be tested, but also demonstrate directly the relative importance of both DLVO and non-classical DLVO forces in the control of protein behavior.     

A partition function‐based weighting scheme in force field parameter development using ab initio calculation results in global configurational space

In force field parameter development using ab initio potential energy surfaces (PES) as target data, an important but often neglected matter is the lack of a weighting scheme with optimal discrimination power to fit the target data. Here, we developed a novel partition function‐based weighting scheme, which not only fits the target potential energies exponentially like the general Boltzmann weighting method, but also reduces the effect of fitting errors leading to overfitting. The van der Waals (vdW) parameters of benzene and propane were reparameterized by using the new weighting scheme to fit the high‐level ab initio PESs probed by a water molecule in global configurational space. The molecular simulation results indicate that the newly derived parameters are capable of reproducing experimental properties in a broader range of temperatures, which supports the partition function‐based weighting scheme. Our simulation results also suggest that structural properties are more sensitive to vdW parameters than partial atomic charge parameters in these systems although the electrostatic interactions are still important in energetic properties. As no prerequisite conditions are required, the partition function‐based weighting method may be applied in developing any types of force field parameters. © 2013 Wiley Periodicals, Inc.     

Quantum-Chemical Study of Structural and Energy Characteristics of Benzonitrile Dimers

Ab initio MP2 calculations with several basis sets proved the existence of a stable benzonitrile dimer with a planar structure and a short contact between the H atom of one molecule and the N atom of another. The structure is greatly stabilized by attraction between the neighboring oppositely directed dipoles and donor-acceptor interaction between the orbital of the lone electron pair of the N′ atom and the vacant antibonding orbital localized on the C-H bond.Original Russian Text Copyright © 2004 by O. V. Sizova, E. P. Sokolova, V. I. Baranovskii, D. A. Rozmanov, and O. A. Tomashenko__________Translated from Zhurnal Strukturnoi Khimii, Vol. 45, No. 5, pp. 807–815, September–October, 2004.     

Many-body response of benzene at monolayer MoS2: Van der Waals interactions and spectral broadening

Models of surface enhancement of molecular electronic response properties are challenging for two reasons: (a) molecule-surface interactions require a simultaneous solution of the molecular and the surface dynamic response (a daunting task), and (b) when solving for the electronic structure of the combined molecule + surface system, it is not trivial to single out the particular physical effects responsible for enhancement. To tackle this problem, in this work, we apply a formally exact decomposition of the system's response function into subsystem contributions by using subsystem density functional theory (DFT), which grants access to dynamic polarizabilities and optical spectra. In order to access information about the interactions between the subsystems, we extend a previously developed subsystem-based adiabatic connection fluctuation-dissipation theorem of DFT to separate the additive from the nonadditive correlation energy and identify the nonadditive correlation as the van der Waals interactions. As an example, we choose benzene adsorbed on monolayer MoS₂. We isolate the contributions to benzene's dynamic response arising from the interaction with the surface, and for the first time, we evaluate the enhancements to the effectiveness of C₆ coefficients as a function of benzene-MoS₂ distance and adsorption site. We also quantify the spectral broadening of the benzene's electronic excited states due to their interaction with the surface. We find that the broadening has a similar decay law with the molecule-surface distance as the leading van der Waals interactions (ie, R⁻⁶ ) and that the surface enhancement of dispersion interactions between benzene molecules is less than 5% but is still large enough (0.5 kcal/mol) to likely play a role in the prediction of interface morphologies.