Density functional theory study of ligand binding on CdSe (0001), (0001), and (1120) single crystal relaxed and reconstructed surfaces: implications for nanocrystalline growth

To gain a better understanding of the influence of ligand-surface interactions on nanocrystalline growth, periodic density functional theory calculations were employed in the study of the binding of organic ligands on the relaxed nonpolar (1120) and polar Se terminated (0001) surfaces and the relaxed and vacancy and adatom reconstructed Cd terminated (0001) surface. We examined chemisorption properties of phosphine, amine, phosphine oxide, carboxylic acid, and phosphinic acid model ligands, including preferred binding sites and geometries, vibrational frequencies, and binding energetics, and compared findings to intrinsic growth via addition of CdSe molecules or Cd and Se atoms. Our results indicate that binding of the ligands is preferred in the electron-poor 1-fold sites on all surfaces, with secondary coordination of the acidic ligands through the hydroxyl hydrogen to the electron-rich surface sites. In general ligand adsorption directly obstructs binding sites for growth species on the (1120) surface and only indirectly on the two polar surfaces. The order of binding affinities on the (1120) and (0001) surfaces is PH(3) < OPH(3) approximately HCOOH < NH(3) < OPH(2)OH and that on the (0001) surface is OPH(3) approximately HCOOH < OPH(2)OH < NH(3) < PH(3). Our findings corroborate the experimental observation that incorporation of the nonbulky phosphinic acid-type ligands with high affinity and high selectivity for both the (1120) and (0001) surfaces strongly enhances unidirectional growth on the (0001) surface, while incorporation of either bulky ligands or ligands with moderate affinity does not. Higher affinity of all traditionally used ligands for the (1120) surface compared to the (0001) surface also suggests that new ligands should be engineered to achieve the synthesis of novel shapes that require preferential growth on the (1120) surface.     

CO和H在Pt/WC(0001)表面的吸附

采用密度泛函理论(DFT)和周期平板模型,研究两种WC(0001)表面的几何结构和表面能,并对Pt原子单层(PtML)在两种WC(0001)表面的高对称性吸附位上的吸附能和分离功进行计算.结果发现,终止于W原子的WC(0001)为最稳定的WC(0001)表面,Pt原子单层以hcp位的方式吸附于W终止的WC(0001)表面是PtML/WC(0001)体系最稳定的几何构型.在此基础上研究了CO分子和H原子分别在PtML/WC(0001)表面和具有相似表面结构的Pt(111)表面的吸附行为.在0.25 ML(monolayer)低覆盖度下,与在Pt(111)表面相比,在PtML/WC(0001)表面上的Pt—C间距明显拉长和CO分子吸附能减少,说明PtML/WC(0001)表面抗CO中毒能力比Pt(111)表面高;态密度分析进一步解释了CO分子与不同表面Pt原子的成键机理.在同一覆盖度下,H原子在PtML/WC(0001)表面的最大吸附能等于甚至略高于在Pt(111)表面的,表明Pt/WC对氢气氧化反应具有良好的催化活性,是一种很有前途的质子交换膜燃料电池(PEMFC)阳极催化剂.     

First-principles modeling of unpassivated and surfactant-passivated bulk facets of wurtzite CdSe: a model system for studying the anisotropic growth of CdSe nanocrystals

Equilibrium geometries, surface energies, and surfactant binding energies are calculated for selected bulk facets of wurtzite CdSe with a first-principles approach. Passivation of the surface Cd atoms with alkyl phosphonic acids or amines lowers the surface energy of all facets, except for the polar 000 facet. On the nonpolar facets, the most stable configuration corresponds to full coverage of surface Cd atoms with surfactants, while on the polar 0001 facet it corresponds only to a partial coverage. In addition, the passivated surface energies of the nonpolar facets are in general lower than the passivated polar 0001 facet. Therefore, the polar facets are less stable and less efficiently passivated than the nonpolar facets, and this can rationalize the observed anisotropic growth mechanism of wurtzite nanocrystals in the presence of suitable surfactants.     

Adsorption Site and State of Nitrogen Atom on Ru（0001）, （1010） Low-index and （1120）, （1121） Stepped Surfaces

The adsorptions of nitrogen atoms on Ru(0001), (1010) low index surfaces and (1120), (1121) stepped surfaces were investigated by the five-parameter Morse potential(5-MP) method in details. Calculated results demonstrate that N atoms show a tendency to be adsorbed at threefold sites. No subsurface state was found for N atoms on Ru(1010) surface. There exist 6 stable adsorption sites for N atoms on Ru(1121) stepped surface which can be classified into 3 types: the on-surface adsorption state, the facet adsor...     

Hydrogen dissociation and diffusion on Ni- and Ti-doped Mg(0001) surfaces

It is well-known, both theoretically and experimentally, that alloying MgH(2) with transition elements can significantly improve the thermodynamic and kinetic properties for H(2) desorption, as well as the H(2) intake by Mg bulk. Here, we present a density functional theory investigation of hydrogen dissociation and surface diffusion over a Ni-doped surface and compare the findings to previously investigated Ti-doped Mg(0001) and pure Mg(0001) surfaces. Our results show that the energy barrier for hydrogen dissociation on the pure Mg(0001) surface is high, while it is small/null when NiTi are added to the surface as dopants. We find that the binding energy of the two H atoms near the dissociation site is high on Ti, effectively impeding diffusion away from the Ti site. By contrast, we find that on Ni, the energy barrier for diffusion is much reduced. Therefore, although both Ti and Ni promote H(2) dissociation, only Ni appears to be a good catalyst for Mg hydrogenation, allowing diffusion away from the catalytic sites. Experimental results corroborate these theoretical findings, i.e., faster hydrogenation of the Ni-doped Mg sample as opposed to the reference Mg- or Ti-doped Mg.     

The role of Ti as a catalyst for the dissociation of hydrogen on a Mg(0001) surface

In this paper, the dissociative chemisorption of hydrogen on both pure and Ti-incorporated Mg(0001) surfaces are studied by ab initio density functional theory (DFT) calculations. The calculated dissociation barrier of hydrogen molecule on a pure Mg(0001) surface (1.05 eV) is in good agreement with comparable theoretical studies. For the Ti-incorporated Mg(0001) surface, the activated barrier decreases to 0.103 eV due to the strong interaction between the molecular orbital of hydrogen and the d metal state of Ti. This could explain the experimentally observed improvement in absorption kinetics of hydrogen when transition metals have been introduced into the magnesium materials.     

Density Functional Theoretical Studies on the Methanol Adsorption and Decomposition on Ru(0001) Surfaces

Periodic density functional theory(DFT) calculations are presented to describe the adsorption and decomposition of CH₃OH on Ru(0001) surfaces with different coverages, including p(3×2), p(2×2), and p(2×1) unit cells, corresponding to monolayer(ML) coverages of 1/6, 1/4, and 1/2, respectively. The geometries and energies of all species involved in methanol dissociation were analyzed, and the initial decomposition reactions of methanol and the subsequent dehydrogenations reactions of CH₃O and CH₂OH were all computed at 1/2, 1/4, and 1/6 ML coverage on the Ru(0001) surface. The results show that coverage exerts some effects on the stable adsorption of CH₃O, CH₂OH, and CH₃, that is, the lower the coverage, the stronger the adsorption. Coverage also exerts effects on the initial decomposition of methanol. C-H bond breakage is favored at 1/2 ML, whereas C-H and O-H bond cleavages are preferred at 1/4 and 1/6 ML on the Ru(0001) surface, respectively. At 1/4 ML coverage on the Ru(0001) surface, the overall reaction mechanism can be written as 9CH₃OH→3CH₃O+6CH₂OH+9H→6CH₂O+3CHOH+18H→7CHO+COH+CH+OH+26H→8CO+C+O+36H.     

Adsorption of organosilanes at a Zn-terminated ZnO (0001) surface: molecular dynamics study

Four different organosilanes (octyltrihydroxysilane, butyltrihydroxysilane, aminopropyltrihydroxysilane, and thiolpropyltrihydroxysilane) adsorbed at a reconstructed Zn-terminated polar ZnO (0001) surface are studied via constant temperature (298 K) molecular dynamics simulations. Both single adsorbed silane molecules as well as adsorbed silane layers are modeled, and the energy, distance, orientation, and alignment of these adsorbates are analyzed. The adsorbed silane molecules exhibit behavior depending on the chemical nature of their tail (nonpolar or polar) as well as on the silane concentration at the solid surface (single adsorption or silane layer). In contrast to the O-terminated ZnO surface studied previously, now adsorption can only occur at the vacancies of this reconstructed crystal surface, thus leading to an arched structure of the liquid phase near the crystal surface. Nevertheless, both nonpolar and polar single adsorbed silanes show a similar orientation and alignment at the surface (orthogonal in the former, parallel in the latter case) as for the O-terminated ZnO surface, although the interaction energy with the surface is considerably increased for nonpolar silanes while it is nearly unaffected for the polar ones. For adsorbed silanes within silane layers, the difference to single adsorbed silanes depends on the polarity of the tail: nonpolar silanes again show an orthogonal alignment, while polar silanes exhibit two different orientations at the solid surface-a head and a tail down configuration. This leads to two completely different but nevertheless stable orientations of these silanes at the Zn-terminated ZnO surface.     

Self-localization of polyacrylic acid molecules on polar ZnO(0001)-Zn surfaces

The adsorption of single polyacrylic acid (PAAc) molecules was investigated on stepped hydroxide-stabilized polar ZnO(0001)-Zn surfaces using atomic force microscope (AFM) topography and force distance spectroscopy. Stepped surfaces of ZnO(0001)-Zn were prepared by a wet chemical etching procedure and PAAc molecules were adsorbed from aqueous NaClO(4) solutions. AFM single molecule topography studies could be utilized to show that polyacrylic acid molecules specifically adsorb on the non-polar (10-10) step edge faces at low ionic strengths. The radius of gyration of the dissolved PAAc in aqueous solution was measured by means of static light scattering experiments yielding a radius of gyration of R(g)=136 nm at pH 7.4 in 50 mM NaClO(4)/NaOH solution, which is in good agreement with the size of the adsorbed PAAc molecules as measured using AFM. The obtained results could be rationalized in terms of binding-site configurations at step edges and the effect of the chemical environment on both local electric double layer charge and molecular conformation of the PAAc molecules. The point of zero charge of the ZnO(10-10) surface was measured with chemical force microscopy to be pH(PZC)=10.2 ± 0.2. The specific adsorption of polyacrylic acid at non-polar ZnO step-edges can be explained by coordinative bonds formed between the carboxylic acid group and the Zn-surface atoms. On the hydroxide stabilized polar surface only weak hydrogen bonds can be formed in addition to van-der-Waals forces. Thus a "diffusion and trapping" mechanism keeps the adsorbed PAAc molecules mobile on the ZnO(0001)-Zn surface terraces due to small interaction forces until they are trapped at the (10-10) step faces by stronger coordinative bonds from the carboxylic groups to zinc atoms located in the first atomic layer of the crystal structure.     

Reactivity of V2O3(0001) surfaces: molecular vs dissociative adsorption of water

The adsorption of water on V2O3(0001) surfaces has been investigated by thermal desorption spectroscopy, high-resolution electron energy loss spectroscopy, and X-ray photoelectron spectroscopy with use of synchrotron radiation. The V2O3(0001) surfaces have been generated in epitaxial thin film form on a Rh(111) substrate with three different surface terminations according to the particular preparation conditions. The stable surface in thermodynamic equilibrium with the bulk is formed by a vanadyl (VO) (1x1) surface layer, but an oxygen-rich (radical3xradical3)R30 degrees reconstruction can be prepared under a higher chemical potential of oxygen (microO), whereas a V-terminated surface consisting of a vanadium surface layer requires a low microO, which can be achieved experimentally by the deposition of V atoms onto the (1x1) VO surface. The latter two surfaces have been used to model, in a controlled way, oxygen and vanadium containing defect centres on V2O3. On the (1x1) V=O and (radical3xradical3)R30 degrees surfaces, which expose only oxygen surface sites, the experimental results indicate consistently that the molecular adsorption of water provides the predominant adsorption channel. In contrast, on the V-terminated (1/radical3x1/radical3)R30 degrees surface the dissociation of water and the formation of surface hydroxyl species at 100 K is readily observed. Besides the dissociative adsorption a molecular adsorption channel exists also on the V-terminated V2O3(0001) surface, so that the water monolayer consists of both OH and molecular H2O species. The V surface layer on V2O3 is very reactive and is reoxidised by adsorbed water at 250 K, yielding surface vanadyl species. The results of this study indicate that V surface centres are necessary for the dissociation of water on V2O3 surfaces.     

Molecular Dissociation on the SiC(0001) 3×3 Surface

In the framework of density functional theory, the adsorption of the halogenated polycyclic aromatic hydrocarbon 2,11‐diiodohexabenzocoronene (HBC‐I₂) on the SiC(0001) 3×3 surface has been investigated. Nondissociative and dissociative molecular adsorption is considered, and simulated scanning tunneling microscopy (STM) images are compared with the corresponding experimental observations. Calculations show that dissociative adsorption is favorable and reveal the crucial importance of the extended flat carbon core on molecule–surface interactions in dissociative adsorption; the iodine atom–surface interaction is of minor importance. Indeed, removing iodine atoms does not significantly affect the STM images of the central part of the molecule. This study shows that the dissociation of large halogenated polycyclic aromatic hydrocarbon molecules can occur on the SiC surface. This opens up interesting perspectives in the chemical reactivity and functionalization of wide band gap semiconductors.     

Stabilization and acidic dissolution mechanism of single-crystalline ZnO(0001) surfaces in electrolytes studied by in-situ AFM imaging and ex-situ LEED

A combined approach of pH-dependent in-situ AFM topography and ex-situ LEED studies of the stability and dissolution of single-crystalline ZnO(0001)-Zn surfaces in aqueous media is presented. Hydroxide-stabilized and single-crystalline ZnO(0001)-Zn surfaces turned out to be stable within a wide pH range between 11 and 4 around the point of zero charge of pH PZC = 8.7 +/- 0.2. Hydroxide stabilization turned out to be a very effective stabilization mechanism for polar oxide surfaces in electrolyte solutions. The dissolution of the oxide surface started at an acidic pH level of 5.5 and occurred selectively at the pre-existing step edges, which consist of nonpolar surfaces. In comparison, the oxide dissolution along the ZnO(0001) direction proved to be effectively inhibited above a pH value of 3.8. On the basis of these microscopic observations, the mechanistic understanding of the acidic dissolution process of ZnO could be supported. Moreover, both the in-situ AFM and the ex-situ LEED studies showed that the stabilization mechanism of the ZnO(0001) surfaces changes in acidic electrolytes. At pH values below 3.8, the hydroxide-stabilized surface is destabilized by dissolution of the well-ordered radical3. radical3. R30 hydroxide ad-layer as proven by LEED. Restabilization occurs and leads to the formation of triangular nanoterraces with a specific edge termination. However, below pH 4 the surface structure of the crystal itself is ill-defined on the macroscopic scale because preferable etching along crystal defects as dislocations into the bulk oxide results in very deep hexagonal etching pits.     

Adsorption and activation of CO over flat and stepped Co surfaces: a first principles analysis

The adsorption and activation of CO over flat Co{0001}, corrugated Co{1120}, and stepped Co{1012} and Co{1124} surfaces have been analyzed using periodic density functional theory calculations. CO strongly chemisorbs on all these surfaces but does not show a strong dependence on the surface structure. The calculated structure of adsorbed CO on Co{0001} at 1/3 monolayer (ML) of coverage was found to be in good agreement with the experiment. The barrier for CO dissociation over Co{0001} was found to decrease with decreasing CO coverage, taking on a value of 232 kJ/mol at 1/4 ML and 218 kJ/mol at 1/9 ML. The presence of the "zigzag" channel on Co{1120} enhances the reactivity slightly by reducing the barrier for CO dissociation to 195 kJ/mol. In contrast, the stepped Co{1012} and Co{1124} surfaces are much more active than the flat and corrugated surfaces. Both stepped surfaces provide direct channels for CO dissociation that do not have barriers with respect to gas-phase CO. In general the activation barriers lower as the reaction energies become more exothermic. Reconstruction of the step edges that occur in the product state, however, prevents a linear correlation between the reaction energy and the activation energy.     

Facet‐Dependent On‐Surface Reactions in the Growth of CdSe Nanoplatelets

Facet‐dependent on‐surface reactions are systematically studied on zinc‐blende CdSe nanoplatelets with atomically‐flat {001} basal facets and small yet non‐polar side facets. The on‐surface half‐reactions between the surface Se sites and Cd carboxylates in the solution are qualitatively equivalent to those on the spheroidal counterparts. Conversely, the on‐surface half‐reactions between the surface Cd sites and the activated Se precursors in solution show a strong facet‐dependence, which includes three distinguishable stages. In the first stage, the Se precursors adsorb onto the small and non‐polar side facets of the nanoplatelets. The second stage is initiated by the adsorbed Se precursors at the side‐basal plane edges and proceeds from the edges to the center of the basal planes in quasi‐zeroth‐order kinetics. In the third stage, the nanoplatelets are dismantled, which includes the creation of a hole in the middle and a build‐up of thick edges.     

Segregation and Stability in Surface Alloys: PdxRu1−x/Ru(0001) and PtxRu1−x/Ru(0001)

The stability of PdRu/Ru(0001) and PtRu/Ru(0001) surface alloys and the tendency for surface segregation of Pd and Pt subsurface guest metals in these surface alloys is studied by scanning tunneling microscopy (STM) and Auger electron spectroscopy (AES). Atomic resolution STM imaging and AES measurements reveal that upon overgrowing the surface alloys with a 1–2 monolayer Ru film and subsequent annealing to the temperatures required for initial surface alloy formation, the Ru‐covered Pd (Pt) atoms float back to the outermost layer. The lateral distribution of these species is also essentially identical to that of the initial surface alloys, before overgrowth by Ru. In combination, this clearly demonstrates that the surface alloys represent stable surface configurations, metastable only towards entropically favored bulk dissolution, and that there is a distinct driving force for surface segregation of these species. Consequences of these data on the mechanism for surface alloy formation are discussed.     

H在Mg(0001)表面吸附、解离和扩散的第一性原理研究

采用基于密度泛函的第一性原理方法, 同时结合Nudged Elastic Band方法, 系统研究了H2分子和H原子在Mg(0001)表面的吸附过程. 给出了H2分子的解离路径和势垒, 结果表明H2分子的吸附过程中仅存在物理吸附; 在给出H原子在Mg(0001)表面的吸附势能面的基础上, 进一步研究了H原子在Mg(0001)表面及体内的扩散过程. 计算发现, Mg(0001) slab存在表面效应, 且对H原子的表面扩散影响较明显. 在此基础上, 通过比较解离、扩散和放氢环节的激活能数据, 为H2分子的解离和氢化物的放氢过程是速控步骤这一结论提供了理论支持.     

First-Principle Calculations of the Adsorption, Dissociation and Diffusion of Hydrogen on the Mg(0001) Surface

First-principle pseudopotential plane wave calculations and the Nudged Elastic Band method based on density functional theory (DFT) have been used in this article to study the dissociation of molecular hydrogen on a Mg(0001) surface and the subsequent diffusion of atomic hydrogen into the magnesium substrate. First, the dissociation pathway of H2 and the relative barrier were investigated. It was shown that physical adsorption rather than chemisorption of molecular hydrogen was observed in the calculation of the dissociation process of molecular hydrogen. Also, the diffusion process of atomic hydrogen on Mg(0001) was presented. The surface effect, which affected the diffusion of hydrogen obviously, was observed. Finally, comparing the values of the activation energies for the steps of dissociation, diffusion, and desorption, our calculation further showed that the dissociation of H2 and the desorption of hydride were the rate-limiting steps.     

Ab initio cluster calculations on the electronic structure of oxygen vacancies at the polar ZnO(0001) surface and on the adsorption of H2, CO, and CO2 at these sites

Oxygen vacancies at the polar O terminated (0001) surface of ZnO are of particular interest, because they are discussed as active sites in the methanol synthesis. In general, the polar ZnO surfaces are stabilized by OH groups, therefore O vacancies can be generated by removing either O atoms or OH or H2O groups from the surface. These defects differ in the number of electrons in the vacancy and the number of OH groups in the neighborhood. In the present study, the electronic structure and the adsorption properties of four different types of oxygen vacancies have been investigated by means of embedded cluster calculations. We performed ab initio calculations on F+ like surface excitations for the different defect types and found that the transition energies are above the optical band-gap, while F+ centers in bulk ZnO show a characteristic optical excitation at 3.19 eV. Furthermore, we studied the adsorption of CO2 and CO at the different defect sites by DFT calculations. We found that CO2 dissociates at electron rich vacancies into CO and an O atom which remains in the vacancy. At the OH vacancy which contains an unpaired electron CO2 adsorbed in the form of CO2-, while it adsorbed as a linear neutral molecule at the H2O defect. CO adsorbed preferentially at the H2O defect and the OH defect, both with a binding energy of 0.3 eV.     

Thiophene adsorption and activation on MoP(001), gamma-Mo2N(100), and Ni2P(001): density functional theory studies

The adsorption and dissociation of thiophene on the MoP(001), gamma-Mo(2)N(100), and Ni(2)P(001) surfaces have been computed by using the density functional theory method. It is found that thiophene adsorbs dissociatively on MoP(001), while nondissociatively on gamma-Mo(2)N(100) and Ni(2)P(001). On MoP(001), the dissociation of the C-S bonds is favored both thermodynamically and kinetically, while the break of the first C-S bond on gamma-Mo(2)N(100) has an energy barrier of 1.58 eV and is endothermic by 0.73 eV. On Ni(2)P(001) there are Ni(3)P(2)- and Ni(3)P-terminated surfaces. On the Ni(3)P(2)-terminated surface, the dissociation of the C-S bonds of adsorbed thiophene is endothermic, while it is exothermic on the Ni(3)P-terminated surface.     

Size/shape-controlled synthesis of colloidal CdSe quantum disks: ligand and temperature effects

Size/shape-controlled colloidal CdSe quantum disks with zinc-blende (cubic) crystal structure were synthesized using air-stable and generic starting materials. The colloidal CdSe quantum disks were approximately square, and their lateral dimensions were varied between 20 and 100 nm with the thickness controlled between 1 and 3 nm, which resulted in sharp and blue-shifted UV-vis and PL peaks due to one-dimensional quantum confinement. The quantum disks were grown with either <001> or <111> direction, polar directions in the single crystalline disks, as the short axis, and both basal planes were terminated with Cd ions. These surface Cd ions were passivated with negatively charged fatty acid ligands to neutralize the net positive charges caused by the excess monolayer of Cd ions. The coordination of the Cd ions and carboxylate groups further enabled the close-packing monolayer of fatty acid ligands on each basal plane. The close packing of the hydrocarbon chains of fatty acids dictated the up temperature limit for synthesis of the colloidal quantum disks, and the low temperature limit was found to be related to the reactivity of the starting materials. Overall, a high Cd to Se precursor ratio, negative-charged fatty acid ligands with a long hydrocarbon chain, and a proper temperature range (approximately between 140 and 250 °C) were found to be needed for successful synthesis of the colloidal CdSe quantum disks.