Transformations of Methyl 2‐[(E)‐2‐(Dimethylamino)‐1‐(methoxycarbonyl)ethenyl]‐1‐methyl‐1H‐indole‐3‐carboxylate

A simple and efficient synthesis of novel 2‐heteroaryl‐substituted 1H‐indole‐2‐carboxylates and γ‐carbolines, compounds 1 – 3 , from methyl 2‐(2‐methoxy‐2‐oxoethyl)‐1‐methyl‐1H‐indole‐3‐carboxylate ( 4 ) by the enaminone methodology is presented.     

(2RS,5SR,6SR)‐Methyl 4‐{cis‐2‐[3‐fluoro‐5‐(4‐methoxy‐3,4,5,6‐tetrahydro‐2H‐pyran‐4‐yl)phenoxy­methyl]‐6‐hydroxy‐3‐phenylmorpholino}­benzene­sulfinate

The title compound, C₃₀H₃₄FNO₇S, is a key inter­mediate in the design of dual 5‐LOX (5‐lipoxygenase)/COX‐2 (cyclo­oxygenase‐2) inhibitors. The compound crystallizes as a racemate. Linear hydrogen‐bonded chains are aligned along the [201] direction, and stacked π–π inter­actions and C—H⋯O contacts stabilize the crystal structure.     

Channel‐forming solvates of 6‐chloro‐2,5‐dihydroxypyridine and its solvent‐free tautomer 6‐chloro‐5‐hydroxy‐2‐pyridone

On crystallization from CHCl₃, CCl₄, CH₂ClCH₂Cl and CHCl₂CHCl₂, 6‐chloro‐5‐hydroxy‐2‐pyridone, C₅H₄ClNO₂, (I), undergoes a tautomeric rearrangement to 6‐chloro‐2,5‐dihydroxypyridine, (II). The resulting crystals, viz. 6‐chloro‐2,5‐dihydroxypyridine chloroform 0.125‐solvate, C₅H₄ClNO₂·0.125CHCl₃, (IIa), 6‐chloro‐2,5‐dihydroxypyridine carbon tetrachloride 0.125‐solvate, C₅H₄ClNO₂.·0.125CCl₄, (IIb), 6‐chloro‐2,5‐dihydroxypyridine 1,2‐dichloroethane solvate, C₅H₄ClNO₂·C₂H₄Cl₂, (IIc), and 6‐chloro‐2,5‐dihydroxypyridine 1,1,2,2‐tetrachloroethane solvate, C₅H₄ClNO₂·C₂H₂Cl₄, (IId), have I4₁/a symmetry, and incorporate extensively disordered solvent in channels that run the length of the c axis. Upon gentle heating to 378 K in vacuo, these crystals sublime to form solvent‐free crystals with P2₁/n symmetry that are exclusively the pyridone tautomer, (I). In these sublimed pyridone crystals, inversion‐related molecules form R²₂(8) dimers via pairs of N—H...O hydrogen bonds. The dimers are linked by O—H...O hydrogen bonds into R⁴₆(28) motifs, which join to form pleated sheets that stack along the a axis. In the channel‐containing pyridine solvate crystals, viz. (IIa)–(IId), two independent host molecules form an R²₂(8) dimer via a pair of O—H...N hydrogen bonds. One molecule is further linked by O—H...O hydrogen bonds to two 4₁ screw‐related equivalents to form a helical motif parallel to the c axis. The other independent molecule is O—H...O hydrogen bonded to two related equivalents to form tetrameric R⁴₄(28) rings. The dimers are π–π stacked with inversion‐related dimers, which in turn stack the R⁴₄(28) rings along c to form continuous solvent‐accessible channels. CHCl₃, CCl₄, CH₂ClCH₂Cl and CHCl₂CHCl₂ solvent molecules are able to occupy these channels but are disordered by virtue of the site symmetry within the channels.     

Methyl 4‐amino‐2,3‐dihydro‐6‐methoxy‐1,3‐dioxo‐1H‐pyrrolo[3,4‐c]pyridine‐7‐carboxylate forms hydrogen‐bonded sheets built from R22(8) and R66(42) rings

In the title compound, C₁₀H₉N₃O₅, which was formed by the reaction of 6‐amino‐2‐methoxy‐4(3H)‐pyrimidinone with di­methyl acetyl­enedi­carboxyl­ate, the mol­ecules are linked by N—H?O hydrogen bonds [N?O 2.8974 (15) and 3.0300 (15) Å, and N—H?O 165 and 174°] into planar sheets built from alternating R₂²(8) and R₆⁶(42) rings.     

A facile synthesis of cytogenin (8‐hydroxy‐3‐hydroxymethyl‐6‐methoxyisocoumarin)

A facile and straightforward synthesis of cytogenin 1 (8‐hydroxy‐3‐hydroxymethyl‐6‐methoxyisocoumarin) metabolite of Streptoverticillium eurocidicum and Certocystis fimbriata has been achieved. Condensation of chloroacetyl chloride with 3,5‐dimethoxyhomophthalic acid 2 directly furnished 3‐chloromethyl‐6,8‐dimethoxyisocoumarin 3 which was hydrolyzed to 6,8‐dimethoxy‐3‐hydroxymethylisocoumarin 4 using 0.05% aqueous sodium hydroxide in THF. Regioselective demethylation of 4 yielded cytogenin 1 . In model experiments, 3‐chloromethylisocoumarin was prepared and converted into 3‐hydroxymethyl isocoumarin.     

(M)‐ and (P)‐8‐[(1S,2R)‐2‐hydroxy‐1‐methyl‐2‐phenylethyl]‐8‐methyl‐8,9‐dihydro‐7H‐dinaphth[2,1‐c:1′,2′‐e]azepinium bromide solvates

The title compounds are diastereoisomers with antipodean axial chirality. The M isomer crystallizes as a (1/3) acetone solvate, C₃₂H₃₀NO⁺·Br^?·3C₃H₆O, while the P isomer crystallizes as a (1/1) di­chloro­methane solvate, C₃₂H₃₀NO⁺·Br^?·CH₂Cl₂. In each structure, O—H?Br hydrogen bonds link the cations and anions to give ion pairs. The seven‐membered azepinium ring adopts the usual twisted‐boat conformation and its ring strain causes a slight curvature of the plane of each naphthyl ring.     

17β‐Ethoxy‐3‐methoxy‐8‐isoestra‐1,3,5(10)‐triene

The conformation of the crystal of 17β‐ethoxy‐3‐methoxy‐8‐iso­estra‐1,3,5(10)‐triene, C₂₁H₃₀O₂, (I), has been established and compared with the molecular structure of a typical steroid estrogen 8‐iso‐analogue, (II). Calculations of distances separating some of the H‐atom pairs in (I) and (II) by molecular‐mechanical and semi‐empirical methods revealed the similarity of the values to the H⃛H distances obtained from X‐ray analysis.     

Hexaquacobalt(II) bis(5‐hydroxy‐7‐methoxy‐4‐oxo‐2‐phenyl‐4H‐chromene‐6‐sulfonate) tetrahydrate

The title compound, [Co(H₂O)₆](C₁₆H₁₁O₇S)₂·4H₂O, with cobalt(II) at the centre of symmetry, exhibits alternating hydrophilic and hydrophobic regions. Hydrophilic regions are generated by O—H...O hydrogen bonds among sulfonate groups, involving solvent water molecules and coordinated water molecules; π–π stacking interactions assemble the flavone skeletons into columns which form the hydrophobic regions. A three‐dimensional network is built up from an extensive array of hydrogen bonds, π–π stacking interactions and electrostatic interactions between the cation and anion. As a salt of the sulfonated derivative of naturally occurring tectochrysin (5‐hydroxy‐7‐methoxyflavone), this compound offers enhanced solubility and potential biological activity over the natural product.     

1‐Chloro‐3,6‐di­methoxy‐2,5‐di­methyl­benzene and 1‐chloro‐3,6‐di­methoxy‐2,4‐di­methyl­benzene

The title compounds, 1‐chloro‐3,6‐di­methoxy‐2,5‐di­methyl­benzene, (IIIa), and 1‐­chloro‐3,6‐di­methoxy‐2,4‐di­methyl­benzene, (IIIb), both C₁₀H₁₃ClO₂, were obtained from 2,5‐ and 2,6‐di­methyl‐1,4‐benzo­quinone, respectively, and are intermediates in the synthesis of ammonium quinone derivatives. The isomers have different substituents around the methoxy groups and crystallize in different space groups. In both mol­ecules, the methoxy groups each have different orientations with respect to the benzene ring. In both cases, one methoxy group lies in the plane of the ring and can participate in conjugation with the aromatic system, while the second is almost perpendicular to the plane of the aromatic ring. The C—O—C bond angles around these substituents are also different: 117.5 (4) and 118.2 (3)° in (IIIa) and (IIIb), respectively, when the methoxy groups lie in the plane of the ring, and 114.7 (3) and 113.6 (3)° in (IIIa) and (IIIb), respectively, when they are out of the plane of the ring.     

Synthesis and Self‐Assembled Helical Supramolecular Polymer of Ethyl 7,8‐dihydro‐3‐hydroxy‐9‐methyl‐7‐(4′‐nitrophenyl)‐6H‐dibenzo[c]‐ pyran‐6‐one‐8‐carboxylate

A structurally novel compound was isolated as the main product of tandem Pechmann–dehydration between diethyl 4‐hydroxy‐4‐methyl‐2‐(4′‐nitrophenyl)‐6‐oxocyclohexane‐1,3‐dicarboxylate ( 1 ) and resorcinol in the presence of trifluoroacetic acid. The structure of the product was determined as a racemate of (7R,8R)‐ and (7S,8S)‐ethyl 7,8‐dihydro‐3‐hydroxy‐9‐methyl‐7‐(4′‐nitrophenyl)‐6H‐dibenzo[c]‐pyran‐6‐one‐8‐carboxylate ( 3a ) enantiomers by single crystal X‐ray diffraction analysis. The X‐ray crystal structure revealed that 3a possesses an extended and more stable conjugated aromatic system as a consequence of the stereoselectivity of intramolecular dehydration behavior of Pechmann condensation product 2 . In the crystal superstructure, the (7R,8R)‐ and (7S,8S)‐isomers of 3a respectively self‐assembled into left‐ and right‐handed supramolecular helical chains with a channel size of 3.70 Å × 10.20 Å in virtue of intermolecular hydrogen bonding together with dramatic twisting between carboxylate group at C8 and tricyclic ring framework of 3a , which are then arranged alternatively along the b‐axis direction with a pitch length of 7.894 Å.     

trans‐Cyano(6‐methyl‐1,4,8,11‐tetraazacyclotetradecan‐6‐amine)cobalt(III) bis(perchlorate) hydrate and trans‐hydroxo(6‐methyl‐1,4,8,11‐tetraazacyclotetradecan‐6‐amine)cobalt(III) bis(perchlorate)

The crystal structures of a pair of closely related macrocyclic cyano‐ and hydroxopenta­amine­cobalt(III) complexes, as their perchlorate salts, are reported. Although the two complexes, [Co(CN)(C₁₁H₂₇N₅)](ClO₄)₂·H₂O and [Co(OH)(C₁₁H₂₇N₅)](ClO₄)₂, exhibit similar conformations, significant differences in the Co—N bond lengths arise from the influence of the sixth ligand (cyano as opposed to hydroxo). The ensuing hydrogen‐bonding patterns are also distinctly different. Disorder in the perchlorate anions was clearly resolved and this was rationalized on the basis of distinct hydrogen‐bonding motifs involving the anion O atoms and the N—H and O—H donors.     

A general synthesis of 8‐hydroxy‐6‐substituted‐1,7‐naphthyridines

A general method for the synthesis of 8‐hydroxy‐6‐substituted‐1,7‐naphthyridines is described using acylation of the dianion derived from tert‐butylamide 1 , followed by cyclization of the resulting intermediate ketones 2 with ammonium acetate.     

4‐Amino‐5‐(2‐hydroxy‐4,4‐di­methyl‐6‐oxo­cyclo­hexenyl­methyl)‐1‐methyl‐2‐(methyl­sulfanyl)­pyrimidin‐6(1H)‐one: hydrogen‐bonded chains are π‐stacked in pairs

Molecules of the title compound, C₁₅H₂₁N₃O₃S, have a markedly polarized electronic structure; the carbocyclic ring adopts an envelope conformation and the overall molecular conformation appears to be controlled by two intramolecular hydrogen bonds, one each of the O—H⋯O and N—H⋯O types. The mol­ecules are linked into C(6) chains by an intermol­ecular N—H⋯O hydrogen bond, and pairs of these hydrogen‐bonded chains are linked by a π–π stacking interaction.     

A simple synthesis of 4‐chloro‐5‐hydroxy‐1H‐benzo[g]indoles

The reaction of methyl 2‐(3‐chloro‐1,4‐dioxo‐1,4‐dihydronaphthalen‐2‐yl)propenoate ( 2a ) with primary amines gave 4‐chloro‐5‐hydroxy‐3‐methoxycarbonyl‐1H‐benzo[g]indoles 5a‐f as major compounds and 3‐methoxycarbonyl‐4,9‐dioxo‐2,3,4,9‐tetrahydro‐1H‐benzo[f]indoles 6a‐d as minor ones. Whereas the reaction of 3‐(3‐chloro‐1,4‐dioxo‐1,4‐dihydronaphthalen‐2‐yl)‐3‐buten‐2‐one ( 2b ) with primary amines afforded the corresponding 1H‐benzo[g]indoles 5g‐i as major products and 3‐acetyl‐4,9‐dihydro‐4,9‐dioxo‐1H‐benzo[f]indoles 7g, h as minor products.     

Hydrogen‐bonding and C—H⋯π interactions in 7‐hydroxy‐3‐methoxy‐4‐methyl‐5,6,7,8‐tetrahydro­pyrido­[1,2‐c]pyrimidin‐1(9H)‐one

In the title compound, C₁₀H₁₄N₂O₃, a pyrimidine ring is fused with a piperidine ring. The pyrimidine ring is planar, whereas the piperidine ring adopts a half‐chair conformation. The molecules of the title compound are connected via O—H⋯O intermolecular hydrogen bonds into infinite zigzag chains. The pyrimidine ring is involved in three C—H⋯π interactions, which link the hydrogen‐bonded chains into a three‐dimensional framework.     

Geometric isomers of chloro(6‐methyl‐1,4,8,11‐tetraazacyclotetradecane‐6‐amine)cobalt(III) tetrachlorozincate(II)

The crystal structures of a pair of cis and trans isomers of the macrocyclic chloro­penta­amine title complex, as their tetra­chloro­zincate(II) salts, [CoCl(C₁₁H₂₇N₅)][ZnCl₄], are re­ported. The two distinct isomeric forms lead to significant variations in the Co—N bond lengths and, furthermore, hydrogen bonding between the complex ions is influenced by the folded (cis) or planar (trans) conformations of the coordinated ligand.