Two‐dimensional hydrogen‐bonded networks in two novel glycoluril derivatives

Two new glycoluril derivatives, namely diethyl 6‐ethyl‐1,4‐dioxo‐1,2,2a,3,4,6,7,7b‐octahydro‐5H‐2,3,4a,6,7a‐pentaazacyclopenta[cd]indene‐2a,7b‐dicarboxylate, C₁₄H₂₁N₅O₆, (I), and 6‐ethyl‐2a,7b‐diphenyl‐1,2,2a,3,4,6,7,7b‐octahydro‐5H‐2,3,4a,6,7a‐pentaazacyclopenta[cd]indene‐1,4‐dione, C₂₀H₂₁N₅O₂, (II), both bearing two free syn‐urea NH groups and two ureidyl C=O groups, assemble the same one‐dimensional chains in the solid state running parallel to the [010] direction via N—H...O hydrogen bonds. Furthermore, the chains of (I) are linked together into two‐dimensional networks via C—H...O hydrogen bonds.     

Chiral one‐dimensional hydrogen‐bonded architectures constructed from single‐enantiomer phosphoric triamides

The two single‐enantiomer phosphoric triamides N‐(2,6‐difluorobenzoyl)‐N′,N′′‐bis[(S)‐(−)‐α‐methylbenzyl]phosphoric triamide, [2,6‐F₂‐C₆H₃C(O)NH][(S)‐(−)‐(C₆H₅)CH(CH₃)NH]₂P(O), denoted L‐1 , and N‐(2,6‐difluorobenzoyl)‐N′,N′′‐bis[(R)‐(+)‐α‐methylbenzyl]phosphoric triamide, [2,6‐F₂‐C₆H₃C(O)NH][(R)‐(+)‐(C₆H₅)CH(CH₃)NH]₂P(O), denoted D‐1 , both C₂₃H₂₄F₂N₃O₂P, have been investigated. In their structures, chiral one‐dimensional hydrogen‐bonded architectures are formed along [100], mediated by relatively strong N—H…O(P) and N—H…O(C) hydrogen bonds. Both assemblies include the noncentrosymmetric graph‐set motifs R₂²(10), R₂¹(6) and C₂²(8), and the compounds crystallize in the chiral space group P1. Due to the data collection of L‐1 at 120 K and of D‐1 at 95 K, the unit‐cell dimensions and volume show a slight difference; the contraction in the volume of D‐1 with respect to that in L‐1 is about 0.3%. The asymmetric units of both structures consist of two independent phosphoric triamide molecules, with the main difference being seen in one of the torsion angles in the OPNHCH(CH₃)(C₆H₅) part. The Hirshfeld surface maps of these levo and dextro isomers are very similar; however, they are near mirror images of each other. For both structures, the full fingerprint plot of each symmetry‐independent molecule shows an almost asymmetric shape as a result of its different environment in the crystal packing. It is notable that NMR spectroscopy could distinguish between compounds L‐1 and D‐1 that have different relative stereocentres; however, the differences in chemical shifts between them were found to be about 0.02 to 0.001 ppm under calibrated temperature conditions. In each molecule, the two chiral parts are also different in NMR media, in which chemical shifts and P–H and P–C couplings have been studied.     

A quasi‐diamondoid hydrogen‐bonded framework in an­hydro­us sulfanilic acid

The title compound (C₆H₇NO₃S) exists as a zwitterion (4‐ammonio­benzene­sulfonate), ⁺H₃NC₆H₄SO₃^?, and these units are linked into a three‐dimensional framework by two distinct two‐centre N—H?O hydrogen bonds [H?O 1.84 and 1.87 Å; N?O 2.767 (2) and 2.746 (2) Å; N—H?O 166 and 172°] and a planar three‐centre N—H?(O)₂ hydrogen bond [H?O 2.03 and 2.37 Å; N?O 2.816 (2) and 2.877 (2) Å; N—H?O 162 and 111°; O?H?O 86°].     

N‐Propionylhydroxylamine forms a three‐dimensional hydrogen‐bonded framework structure

The title compound, N‐hydroxy­propan­amide, C₃H₇NO₂, crystallizes with Z′ = 3 in P2₁/c. The mol­ecules are linked by three N—H?O hydrogen bonds [N?O 2.8012 (16) to 2.8958 (15) Å; N—H?O 163 to 168°] and by three O—H?O hydrogen bonds [O?O 2.6589 (15) to 2.6775 (17) Å; O—H?O 165 to 177°] into a single three‐dimensional framework.     

Self‐assembly of a triblock terpolymer mediated by hydrogen‐bonded complexes

A poly(methyl methacrylate)‐block‐poly(4‐vinylpyridine)‐block‐polystyrene (PMMA‐b‐P4VP‐b‐PS) triblock terpolymer is synthesized by ATRP to study its self‐assembly with PAA in organic solvents. The self‐assembly behavior of this system is compared with the one of a mixture of two diblocks, namely polystyrene‐block‐poly(4‐vinylpyridine) (PS‐b‐P4VP) and poly(methyl methacrylate)‐block‐poly(methacrylic acid) (PMMA‐b‐PMAA). For both systems, formation of hydrogen‐bonded complexes between the P4VP and PMAA or PAA blocks occurs. These complexes become insoluble in the solvent used and micelles with a P4VP/P(M)AA complexes core surrounded by PS and PMMA coronal chains are obtained in both cases. These micelles are analyzed by DLS and TEM. Spherical micelles are formed for both systems but the hydrodynamic radii obtained for the two types of micelles are different. Indeed, the micelles formed by the PMMA‐b‐P4VP‐b‐PS + PAA system are smaller than those observed for the PS‐b‐P4VP + PMMA‐b‐PMAA system. Finally, the effect of the molar ratio of the P4VP/PMAA complexing blocks is investigated. © 2014 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2015 , 53, 459–467     

Hexamethylenediammonium bis(chloroacetate): a three‐dimensional hydrogen‐bonded framework structure

In the title compound, C₆H₁₈N₂²⁺·2C₂H₂ClO₂⁻, the cation lies across an inversion centre in the P space group. The ions are linked by two two‐centre N—H...O hydrogen bonds and by one three‐centre N—H...(O)₂ hydrogen bond to form a three‐dimensional framework structure. The significance of this study lies in the analysis of the complex hydrogen‐bonded structure and in the comparison of this structure with those of other simple hexamethylenediammonium salts.     

Polymeric dopant effects of bent‐core covalent‐bonded and hydrogen‐bonded structures on banana‐shaped liquid crystalline complexes

Two series of banana‐shaped liquid crystalline (LC) H‐bonded complexes HP_m / CB_n (i.e., bent‐core H‐bonded side‐chain homopolymer HP mixed with bent‐core covalent‐bonded small molecule CB ) and CP_m / HB_n (i.e., bent‐core covalent‐bonded side‐chain homopolymer CP mixed with bent‐core H‐bonded small molecular complex HB ) with various m/n molar ratios were developed. The bent‐core covalent‐ and H‐bonded structural moieties were homopolymerized in the banana‐shaped LC H‐bonded complexes HP_m / CB_n and CP_m / HB_n , respectively. The influences of m/n molar ratios (polymeric moieties vs. small molecular moieties) on the mesomorphic and electro‐optical properties of both banana‐shaped LC H‐bonded complexes HP_m / CB_n and CP_m / HB_n were investigated. The polar smectic phases could be achieved and stabilized by smaller contents of polymeric dopants in banana‐shaped LC H‐bonded complexes, such as HP1/CB10 , HP1/CB15 , CP1/HB10 , and CP1/HB15 , which possessed tunable spontaneous polarization (Ps) values according to the molar ratios of m/n , that is, lower Ps values obtained in H‐bonded complexes HP_m /CB_n and CP_m / HB_n with higher ratios of H‐bonded moieties (larger m/n molar ratios), respectively. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 764–774, 2010     

A novel three‐dimensional framework constructed by 2‐[(1H‐imidazol‐1‐yl)methyl]‐1H‐benzimidazole and infinite chains of hydrogen‐bonded water molecules

A novel three‐dimensional framework of 2‐[(1H‐imidazol‐1‐yl)methyl]‐1H‐benzimidazole dihydrate, C₁₁H₁₀N₄·2H₂O or L·2H₂O, (I), in which L acts as both hydrogen‐bond acceptor and donor in the supramolecular construction with water, has been obtained by self‐assembly reaction of L with H₂O. The two independent water molecules are hydrogen bonded alternately with each other to form a one‐dimensional infinite zigzag water chain. These water chains are linked by the benzimidazole molecules into a three‐dimensional framework, in which each organic molecule is hydrogen bonded by three water molecules. This study shows that the diversity of hydrogen‐bonded patterns plays a crucial role in the formation of the three‐dimensional framework. More significantly, as water molecules are important in contributing to the conformation, stability, function and dynamics of biomacromolecules, the infinite chains of hydrogen‐bonded water molecules seen in (I) may be a useful model for water in other chemical and biological processes.     

Chiral discrimination in hydrogen‐bonded complexes of 2‐methylol oxirane with hydrogen peroxide

A systematic quantum chemical study reveals the effects of chirality on the intermolecular interactions between two chiral molecules bound by hydrogen bonds. The methods used are second‐order Møller–Plesset perturbation theory (MP2) with the 6‐311++g(d,p) basis set. Complexes via the O? H···O hydrogen bond formed between the chiral 2‐methylol oxirane (S) and chiral HOOH (P and M) molecules have been investigated, which lead to four diastereomeric complexes. The nomenclature of the complexes used in this article is enantiomeric configuration sign corresponding to English letters. Such as: sm, sp. The relative positions of the methylol group and the hydrogen peroxide are designated as syn (same side) and anti (opposite side). The largest chirodiastaltic energy was ΔE_chir = ?1.329 kcal mol^?1 [9% of the counterpoise correct average binding energy D_e(corr)] between the sm‐syn and sp‐anti in favor of sm‐syn. The largest diastereofacial energy was ?1.428 kcal mol^?1 between sm‐syn and sm‐anti in favor of sm‐syn. To take into account solvents effect, the polarizable continuum model (PCM) method has been used to evaluate the chirodiastaltic energies, and diastereofacial energies of the 2‐methylol oxirane···HOOH complexes. The chiral 2,3‐dimethylol oxirane (S, S) is C₂ symmetry which offers two identical faces. Hence, the chirodiastaltic energy is identical to the diastereomeric energy, and is ΔE_chir = 0.563 kcal mol^?1 or 5.3% of the D_e(corr) in favor of s,s‐p. The optimized structures, interaction energies, and chirodiastaltic energies for various isomers were estimated. The harmonic frequencies, IR intensities, rotational constants, and dipole moments were also reported. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

Protonation products of pentaaminopentane as novel building blocks for hydrogen‐bonded networks

The structures of 3‐amino‐1,2R,4S,5‐tetra­ammoniopentane tetrachloride monohydrate, C₅H₂₁N₅⁴⁺·4Cl^?·H₂O, and 1,2R,3,4S,5‐penta­ammoniopentane tetra­chloro­zincate tri­chlor­ide monohydrate, (C₅H₂₂N₅)[ZnCl₄]Cl₃·H₂O, have been determined from single‐crystal X‐ray diffraction data. Both compounds show a complex network of N—H?O, O—H?Cl and N—H?Cl hydrogen bonds. There are a total of 14 H atoms of the tetra‐cation and 15 H atoms of the penta‐cation available for hydrogen bonding. However, due to the particular shape of the primary linear poly­ammonium cations, only a certain number of H atoms can be involved in hydrogen‐bond formation. It is further shown that hydrogen bonding has an influence on the conformation of such alkyl­ammonium cations.     

Density functional theory study on hydrogen‐bonded complexes of adenine with polyformamide molecules

The structures of hydrogen‐bonded complexes A–F_n (n = 2–7) of adenine with polyformamide molecules have been fully optimized at B3LYP/6‐31G(d) basis set level. All the formamide molecules prefer to be N? H proton donor rather than C? H proton donor and are favorably bound to the five‐numbered moiety of adenine. A displacement of formamide molecules to one side of adenine mean plane has happened with an increasing number of formamide molecules. An obvious effect of hydrogen‐bonding cooperativity can be seen during the complex process. The most interesting geometrical change of adenine upon the complex is the shortening of the bond C4? N6 resulting from the strengthening of the conjugation between the π system of the adenine ring and the lone pair of the nitrogen atom. An existence of weak N? H···π bonding interaction between the π system of adenine and N? H bond of F7 is found and further conformed by an natural bond orbital analysis specially carried out on A–F₇. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

Theoretical study of hydrogen‐bonded complexes of benzene with hydrides of astrochemical interest

Post Hartree–Fock and DFT calculations have been performed for studying the possibility for a benzene support to be linked to various hydrides through a quasi Bz···H? A bond. Interaction energy of compounds, including C? H bonds (CH₄, CH₃F, CH₂O, CHN, CHN? O), N? H bonds (NH₃, NH₂F, NHC, NHCO, NH₃O), and O? H bonds (OH₂, OHF, NCOH), were evaluated, taking basis set superposition error (BSSE) and zero point vibrational energy (ZPVE) corrections into account. Numerical convergence of results with respect to the ingredients included at different steps of theory (basis set, DFT functionals, correlation treatments, geometry optimization) was tested mainly on the example of the water adduct and, for comparison, the Bz···H₃O⁺ system containing a cation instead of a neutral molecule. A rather large range of adsorption energies is obtained, from about 1 kcal/mol for methane to more than 6 kcal/mol for cyanic acid, according to the acidic character of the adsorbed species in each family of Bz···H? A bonds. Some consequences for astrophysical problems involving PAHs in the interstellar medium are pointed out. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

A comparative study of some lithium and hydrogen‐bonded complexes: Ab initio and QTAIM studies

The nature of the interactions of cyanide with lithium and hydrogen halides was investigated using ab initio calculations and topological analysis of electron density. The computed properties of the lithium‐bonded complexes RCN···LiX (R = H, F, Cl, Br, C?CH, CH?CH₂, CH₃, C₂H₅; X = Cl, Br) were compared with those of corresponding hydrogen‐bonded complexes RCN···HX. The results show that both types of intermolecular interactions are “closed‐shell” noncovalent interactions. The effect of substitution on the interaction energy and electron density at the bond critical points of the lithium and hydrogen bonding interactions is similar. In comparison, the interaction energies of lithium‐bonded complexes are more negative than those of hydrogen‐bonded counterparts. The electrostatic interaction plays a more important role in the lithium bond than in the hydrogen bond. On complex formation, the net charge and energy of the Li atom decrease and the atomic volume increases, while the net charge and energy of the H atom increase and the atomic volume decreases. © 2013 Wiley Periodicals, Inc.     

New basis sets for the evaluation of interaction‐induced electric properties in hydrogen‐bonded complexes

Interaction‐induced static electric properties, that is, dipole moment, polarizability, and first hyperpolarizability, of the CO? (HF)_n and N₂? (HF)_n, n = 1–9 hydrogen‐bonded complexes are evaluated within the finite field approach using the Hartree–Fock, density functional theory, Møller–Plesset second‐order perturbation theory, and coupled cluster methods, and the LPol‐n (n = ds, dl, fs, fl) basis sets. To compare the performance of the different methods with respect to the increase of the complex size, we consider as model systems linear chains of the complexes. We analyze the results in terms of the many‐body and cooperative effects. © 2012 Wiley Periodicals, Inc.     

Two phosphate–imidazole complexes with and without a hydrogen‐bonded guest mol­ecule

The mol­ecular structures of the complexes imidazolium 6,6′‐di‐tert‐butyl‐4,4′‐dimethyl‐2,2′‐thio­diphenyl phosphate, C₃H₅N₂⁺·C₂₂H₂₈O₄PS⁻, (I), and imidazolium 6,6′‐di‐tert‐butyl‐4,4′‐dimethyl‐2,2′‐thio­diphenyl phosphate diisopropyl hydrazo­dicarboxyl­ate hemisolvate, C₃H₅N₂⁺·C₂₂H₂₈O₄PS⁻·0.5C₈H₁₆N₂O₄, (II), have been determined. While (I) forms the expected hydrogen‐bonded chain utilizing the two imidazole N‐bound H atoms, in (II), the substituted hydrazine solvent mol­ecule inserts itself between the chains. Compound (I) exhibits a strong N—H⋯O hydrogen bond, with an N⋯O distance of 2.603 (2) Å. The hydrazine solvent molecule in (II) lies about a twofold axis and the N‐bound H atoms are involved in bifurcated hydrogen bonds with phosphate O atoms. A C‐bound H atom of the imidazolium cation is involved in a C—H⋯O inter­action with a carbonyl O atom of the hydrazine solvent mol­ecule.     

Polymorph VI of sulfapyridine: interpenetrating two‐ and three‐dimensional hydrogen‐bonded nets formed from two tautomeric forms

Polymorph VI of 4‐amino‐N‐(2‐pyridyl)benzenesulfonamide, C₁₁H₁₁N₃O₂S, is monoclinic (space group P2₁/n). The asymmetric unit contains two different tautomeric forms. The structure displays N—H...N and N—H...O hydrogen bonding. The two independent molecules form two separate two‐ and three‐dimensional hydrogen‐bonded networks which interpenetrate. The observed patterns of hydrogen bonding are analogous to those in polymorph I of sulfathiazole.     

A novel (3,4,10)‐connected three‐dimensional hydrogen‐bonded supramolecular network containing a cyclic water hexamer

The title compound, 4,4′‐(1,1,1,3,3,3‐hexafluoroisopropylidene)diphthalic acid hexahydrate, C₁₉H₁₀F₆O₈·6H₂O, crystallizes in the centrosymmetric space group Pbcn, with half of the diphthalic acid residue and three water molecules in the asymmetric unit. The organic molecule is located on a crystallographic twofold axis. In the solid, cyclic water hexamers in chair conformations have crystallographically imposed inversion symmetry. Strong O—H...O hydrogen bonds between the hexamers and organic molecules result in a unique three‐dimensional supramolecular network [O...O = 2.554 (2)–2.913 (2) Å]. This compound represents the first example of a (3,4,4,10)‐connected four‐nodal supramolecular topology with the Schläfli symbol (4³.5.6.7)₂(4³.5².7)₂(4³)₂(4⁶.5⁶.6².7⁸.8¹⁴.9⁹).     

Rayleigh light scattering from hydrogen‐bonded dimers of small astrophysical molecules

High level ab initio calculations of the Rayleigh scattering activities of the hydrogen‐bonded dimers of formic acid (HCOOH), nitrosyl hydride (HNO), and hydrogen cyanide (HCN) molecules have been performed. All these molecules have already been detected in interstellar space and are of great importance from the astrochemical point of view. The geometries of the homo‐ and hetero‐dimers have been optimized using Hartree–Fock and second‐order Møller‐Plesset perturbation theory. Dipole moment, mean dipole polarizability, and polarizability anisotropy have been calculated utilizing Pople‐type 6‐311++G(d,p) and Dunning's aug‐cc‐pVDZ basis sets for all the complexes. The polarizabilities are then used to calculate and analyze the Rayleigh scattering parameters. The results for the dimers, HCN···HCN, HCOOH···HCOOH, HNO···HNO, HCN···HCOOH, HCN···HNO, and HNO···HCOOH are compared with those of the isolated molecules, HCN, HCOOH, and HNO to see the effect of hydrogen bond formation on the molecular interaction with radiation. © 2011 Wiley Periodicals, Inc.     

Significant glass‐transition‐temperature increase through hydrogen‐bonded copolymers

The role of hydrogen bonding in promoting intermolecular cohesion and higher glass‐transition temperatures of polymer is a subject of longstanding interest. A series of poly(vinylphenol‐co‐vinylpyrrolidone) copolymers were prepared by the free‐radical copolymerization of acetoxystyrene and vinylpyrrolidone; this was followed by the selective removal of the acetyl protective group, with corresponding and significant glass‐transition‐temperature increases after this procedure. The incorporation of acetoxystyrene into poly(vinylpyrrolidone) resulted in lower glass‐transition temperatures because of the reduced dipole interactions in its homopolymers. However, the deacetylation of acetoxystyrene to transform the poly(vinylphenol‐co‐vinylpyrrolidone) copolymer enhanced the higher glass‐transition temperature because of the strong hydrogen bonding in the copolymer chain. The thermal properties and hydrogen bonding of these two copolymers were investigated with differential scanning calorimetry and Fourier transform infrared spectroscopy, and good correlations between the thermal behaviors and IR results were observed. © 2002 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 40: 2313–2323, 2002