Al4(2-); the anion-π interactions and aromaticity in the presence of counter ions

The influence of presence of counter ions and π-complexation with benzene on the bonding and magnetic properties of Al(4)(2-), the most studied all-metal cluster, is studied here. It is shown that complexation by either counter ions or benzene decreases the delocalization index between Al atoms and the magnitude of bond magnetizability, that is a Quantum Theory of Atoms in Molecules, QTAIM, -based magnetic index of aromaticity. Benzene forms two types of π-complexes with the Al(4) framework; CH-π (T-shaped) complexes and parallel π-π stacking (PPS) complexes. It is shown that variation in the π-charge of the Al(4) framework affects the relative stability of the T-shaped/PPS complexes. Free Al(4)(2-) forms a stable T-shaped anion-π complex with benzene but in the presence of cations, formation of PPS complexes is more favourable, energetically. It is suggested that this property could be used for designing molecular switches and tuneable anion sensors.     

Protonation states of the catalytic dyad of β-secretase (BACE1) in the presence of chemically diverse inhibitors: a molecular docking study

In this molecular docking study, the protonation states of the catalytic Asp dyad of the beta-secretase (BACE1) enzyme in the presence of eight chemically diverse inhibitors have been predicted. BACE1 catalyzes the rate-determining step in the generation of Alzheimer amyloid beta peptides and is widely considered as a promising therapeutic target. All the inhibitors were redocked into their corresponding X-ray structures using a combination of eight different protonation states of the Asp dyad for each inhibitor. Five inhibitors were primarily found to favor two different monoprotonated states, and the remaining three favor a dideprotonated state. In addition, five of them exhibited secondary preference for a diprotonated state. These results show that the knowledge of a single protonation state of the Asp dyad is not sufficient to search for the novel inhibitors of BACE1 and the most plausible state for each inhibitor must be determined prior to conducting in-silico screening.     

Ultrasonic study of the molecular encapsulation and the micellization processes of dodecylethyldimethylammonium bromide-water solutions in the presence of β-cyclodextrin or 2,6-di-o-methyl-β-cyclodextrin

Aqueous solutions of -cyclodextrin (-CD) or 2,6-di-o-methyl--cyclodextrin (DM--CD) and dodecylethyldimethylammonium bromide (D₁₂EDMAB) have been studied from speed of sound (u) data at 298.15 K, using a pulse-echo-overlap technique. The molecular encapsulation process of the surfactant monomer into the cyclodextrin cavity and its effect in the micellization process of the surfactant have been analyzed from theu measurements: I) as a function of [D₁₂EDMAB] in the presence of several initial cyclodextrin concentrations (-CD or.DM--CD); II) as a function of [cyclodextrin] (-CD or DM--CD), for an initial micellar solution of D₁₂EDMAB and; III) as a function of the [cyclodextrin]/[surfactant] stoichiometric concentrations. Both inclusion complexes formed (-CDD₁₂EDMAB) and (DM--CDD₁₂EDMAB) have stoichiometries of 11, and their association constantK have been determined using a model proposed in this work, based on the additivity of the different contributions of the involved species to the speed of sound. The apparent critical micellar concentration, cmc^*, of D₁₂EDMAB is found to increase linearly upon the addition of cyclodextrin (-CD or DM--CD). The free surfactant concentration in the micellar region, [D₁₂EDMAB]_f, decreases in the presence of -CD and slightly increases in the presence of DM--CD. The influence of the parcial methylation of the -cyclodextrin (-CDDM--CD) and of the polar head of the surfactant (D₁₂TAB D₁₂EDMAB) on the complextion and micellar parameters are also discussed.Supplementary material available: Tables of speed of sound (14 pages) are available from the authors.     

New approach to the synthesis of 2,6-difluorobenzoyl isocyanate and its use in the preparation of N-(2,6-difluorobenzoyl)-N′-(polyfluoroaryl)ureas

The treatment of 2,6-difluorobenzoyl chloride with trimethylsilyl isocyanate gave 2,6-difluorobenzoyl isocyanate. This product reacts with polyfluoroaromatic amines to give the corresponding N-(2,6-difluorobenzoyl)-N-(polyfluoroaryl)urea, which hold potential as inhibitors for the biosynthesis of insect chitin.Institute of Chemistry, Bashkir Science Center, Urals Branch, Russian Academy of Sciences, 450054 Ufa. Novosibirsk Institute of Organic Chemistry, Siberian Branch, Russian Academy of Sciences, 630090 Novosibirsk. Translated from Izvestiya Akademii Nauk, Seriya Khimicheskaya, No. 2, pp. 468–470, February, 1992.     

Synthesis of α,β-disubstituted aldehydes involving metallated 1-aza-1,3-butadienes in the presence of phosphine complexes of palladium

A novel catalytic method was developed for the synthesis of,-disubstituted aldehydes by the reaction of N-, O-, and S–containing allyl electrophiles with magnesium azaenolates obtained by metallation of,-unsaturated imines by Grignard reagents. The reaction is carried out with high regio- and stereoselectivity in the presence of phosphine complexes of palladium.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 10, pp. 2339–2348, October, 1991.     

Molecular modeling on pyrimidine-urea inhibitors of TNF-α production: an integrated approach using a combination of molecular docking, classification techniques, and 3D-QSAR CoMSIA

Molecular docking, classification techniques, and 3D-QSAR CoMSIA were combined in a multistep framework with the ultimate goal of identifying potent pyrimidine-urea inhibitors of TNF-α production. Using the crystal structure of p38α, all the compounds were docked into the enzyme active site. The docking pose of each compound was subsequently used in a receptor-based alignment for the generation of the CoMSIA fields. "Active" and "inactive" compounds were used to build a Random Tree classification model using the docking score and the CoMSIA fields as input parameters. Domain of applicability indicated the compounds for which activity estimations can be accepted with confidence. For the active compounds, a 3D-QSAR CoMSIA model was subsequently built to accurately estimate the IC(50) values. This novel multistep framework gives insight into the structural characteristics that affect the binding and the inhibitory activity of these analogues on p38α MAP kinase, and it can be extended to other classes of small-molecule inhibitors. In addition, the simplicity of the proposed approach provides expansion to its applicability such as in virtual screening procedures.     

Probing the Binding of 4β-(Benzoyl-thioureido)-4-deoxypodophyllotoxin to Human Serum Albumin by Molecular Spectroscopy

Journal of Solution Chemistry - The binding interaction of 4β-(benzoyl-thioureido)-4-deoxypodophyllotoxin (HY-1) with human serum albumin (HSA) was investigated by fluorescence,...     

Synthesis and Molecular Structure of 5, 5-Dimethyl-2- (4' -methoxy)phenyl-1, 3, 2- thiazaphospholidine-4-thione 2-sulfide

1 INTRODUCTION In our previous study [1], we found that 1, 3, 2-thiazaphospholidine-4-thione 2-sulfide deriva- tives possessed various bioactivities such as herbicidal, antiviral, fungicidal activity, Which the is strongly held our interest to exploit new method for the synthesis of such phosphorohe- terocycles and investigate their biological activities. Different method for the preparation of 1, 3, 2-thiazaphospholidine-4-thione (one) 2-sulfides have been reported [2~4]. According to …     

Charge-Transfer Chromatographic Study on the Interaction of Nonhomologous Series of Nonionic Surfactants with Heptakis(2,6-di-O-methyl)-β-cyclodextrin

Abstract

The interaction of 38 nonionic surfactants containing various hydrophobic moieties with dimethyl-β-cyclodextrin (DIMEB) was studied by charge transfer chromatography. DIMED modified the retention behaviour of each surfactant, however, the strength of interaction varied considerably. Both the lipophilicity and specific hydrophobic surface area of surfactants significantly influenced the strength of interaction. The presence of ester bond and double bond in the hydrophobic moiety of surfactants has impact on the complex formation.     

Molecular organization and aggregation of mucin at air–water interface in the presence of chromium(III) complexes

The interfacial organization of mucin (glycoprotein) in the presence of chromium(III) complexes has been assessed from the surface pressure–molecular area (π–A) isotherms in Langmuir films at air–water interface and the surface energy of their LB films through contact angle measurements. At pH 7.0, the electrostatic interaction of [Cr(en)₃]Cl₃ with mucin was found to bring about changes in the average surface area from 3.26 to 1.47 nm²; suggesting the possible formation of large aggregates of mucin. Adsorption experiments using surface potential measurements reveal that [Cr(en)₃]Cl₃ binds at a much faster rate to the available binding sites in mucin when compared to [Cr(salen)(H₂O)₂](ClO₄) which binds coordinatively to mucin.     

Palladium(II)-catalyzed Suzuki–Miyaura reactions of arylboronic acid with aryl halide in water in the presence of 4-(benzylthio)-N,N,N-trimethybenzenammonium chloride

This work reported that Suzuki–Miyaura coupling reactions of arylboronic acid with aryl bromide or iodides were mediated by Pd(OAc)₂ and 4-(benzylthio)-N,N,N-trimethylbenzenammonium chloride in the presence of Na₂CO₃ in water under the mild conditions. The corresponding Suzuki–Miyaura coupling products were obtained in good to excellent yields.     

Molecular docking study on β-cyclodextrin Interactions of metobromuron and [3-(p-bromophenyl)-1-methoxy-1-methylurea]

The inclusion process involving β-cyclodextrin (β-cyclodextrin-CD) and phenylurea herbicide metobromuron (MB) has been investigated by using the MM+, PM3, B3LYP, HF, ONIOM2 and NBO methods. The binding and complexation energies for both orientations considered in this research are reported. The geometry of the most stable complex shows that the aromatic ring is deeply self-included inside the hydrophobic cavity of β-CD also an intermolecular hydrogen bond is established between host and guest molecules. This suggests that hydrophobic effect and hydrogen bond play an important role in the complexation process. The statistical thermodynamic calculations by PM3 demonstrate that 1:1?MB/β-CD complex is favored by a negative enthalpy change. Moreover, NBO calculations proved also that are a very useful means to quantify the interaction energies of the hydrogen bonds.     

Theory on the molecular characteristic contour (II)——Molecular intrinsic characteristic contours of several typical organic molecules

Shape and size of a molecule are the most fun-damental concepts in modern chemistry, and its appli-cations, especially about molecular surface area and molecular volume, are numerous in many fields[1—10]. Most properties of a molecule, including the proc…     

New Fluoroaryl-containing β,β'-Dioxoesters in the Synthesis of Fluorobenzopyran-2(4)-ones

For the first time were obtained ethyl 2-(2-methoxy-3,4,5,6-tetrafluorobenzoyl)-3-oxobutanoate and ethyl 2-pentafluorobenzoyl-3-oxobutanoate and their copper chelates. The compounds were prepared by acylation of ethyl acetoacetate with 2-methoxy-3,4,5,6-tetrafluoro- and pentafluorobenzoyl chlorides. Cyclization of these ,'-dioxoesters afforded substituted chromones. 2-Methyl-5-methoxy-6,7,8-trifluoro-3-ethoxycarbonylchromone hydrolyzes depending on reaction conditions either to 5-hydroxy-2-methyl-6,7,8-trifluorochromone or to 5-hydroxy-2-methyl-6,7,8-trifluorochromone-3-carboxylic acid. Reaction with morpholine provided 7-substituted product, and with aqueous ammonia as a result of rearrangement forms 3-acetimidoyl-4-hydroxy-5-methoxy-6,7,8-trifluorocoumarin. Hydrolysis of the latter yields 3-acetyl-4-hydroxy-5-methoxy-6,7,8-trifluorocoumarin.     

Excitonic coupling interactions in the self-assembly of perylene-bridged bis(β-cyclodextrin)s and porphyrin

A supramolecular self-assembly has been constructed by perylene-bridged bis(β-cyclodextrin)s with water-soluble porphyrin through hydrophobic interactions, showing strong excitonic coupling interactions between perylene backbones and included porphyrins.     

Cyclization of 2-methoxy-6-(substituted benzyloxy)acetophenone hydrazones in the presence of polyphosphoric acid(PPA)

Cyclization of 2-methoxy-6-benzyloxy acetophenone hydrazone gave 3-methyl-4-meth-oxy indazole and 3-methyl-4-methoxy-7-benzyl indazole in the presence of polyphosphoric acid(PPA).The hydrazone was probably converted to 2-hydroxy-6-methoxy acetophenone hydra-zone and 2-hydroxy-3-benzyl-6-methoxy acetophenone hydrazone followed by cyclization to thecorresponding indazoles in acidic conditions.Cyelization of 2-methoxy-6-(halo or alkyl or arylbenzyloxy)acetophenone hydrazones gave similar products.Cyclization of 2-methoxy-6-(p-nitrobenzyloxy)acetophenone hydrazone gave 2-(p-nitrophenyl)-3-methyl-4-methoxy benzo-furan and 3-methyl-4-methoxy indazole while 2-methoxy-6-(m-nitrobenzyloxy)acetophenonehydrazone gave 3-methyl-4-methoxy indazole,3-methyl-4-methoxy-7-(m-nitrophenyl)indazole and3-methyl-4-(m-nitrobenzyloxy)indazole.     

Anion···π-system interactions in crystals of 4-amino-1-(β-phenylethyl)-1,2,4-triazolium bromide

The character of intermolecular interactions of the bromide anion and organic cation in crystal of 4-amino-1-(β-phenylethyl)-1,2,4-triazolium bromide was studied by a combination of X-ray diffraction data and M06-2X/cc-pvtz quantum chemical calculations. The existence of binding anion...π-system interactions was shown, and their characteristics were studied.