Crystalline inclusion compounds of lower rim propyl substituted calix[4]arenes featuring different number and positions of the modifying groups

Three lower rim n-propyl substituted calix[4]arenes (1–3) with varied number and position of the modifying groups have been prepared. Inclusion compounds (five species) involving different kinds of guest solvents have been isolated. Their X-ray crystal structures were determined and comparatively discussed using isostructurality calculations. Two of the inclusion compounds obtained (1a and 1b) are polymorphs containing the same host and guest molecules in equal stoichiometric ratio but different Z′ values caused by a phase transition around 140 K. The inclusion compounds 2a and 2b refer to the interesting case of a mixed solvent complex while 3a allows studying the effect of full lower rim n-propyl substitution.     

On the stability of single-walled carbon nanotubes and their binding strengths

The series of rhenium (I) tricarbonyl mixed-ligand complexes ReCl(CO)₃(H_nbpydt) (n?=?2, 1; n?=?4, 2; bpy?=?bispyridine, dt?=?1,3-dithiole) and ReCl(CO)₃(H_nbpyTTF) (n?=?2, 3; n?=?3, 4; TTF?=?Tetrathiafulvalene) have been investigated theoretically to explore the effect of COOH functional group on their electronic structures, spectroscopic properties and their properties as dye in a solar cell. The calculated geometry structure and absorption spectrum of 1 and 3 are generally consistent with the experimental results. By attaching the COOH groups on both bpy and dt (TTF in 4) moiety in 2, the nature of LUMO is also contributed by both π*(bpy) and π*(dt) (π*(TTF) in 4), and the absorptions have an obvious red shift compared with 1 and 3. In addition, it can be found that the transition terminates at the orbital populated by the COOH-appended moieties, and the performance of 2 and 4 in the dye-sensitized solar cell can be enhanced as compared with 1 and 3.     

Crystalline inclusion compounds of new hydroxy hosts featuring a pentaaryl substituted cyclopentadienol framework

The new host compounds 2 and 3 containing a biphenyl or terphenyl moiety attached to the 1-position of a bulky 2,3,4,5-tetraphenylcyclopentadiene-1-ol building unit have been synthesized. Crystal structures of corresponding inclusion complexes with n-hexane (2a), DMSO (2b) and THF (3a) are reported and comparatively discussed involving known inclusion structures of 1, being the parent of this particular class of host molecules. The structural modification from 1 via 2?C3 gives rise to distinct changes of the inclusion property concerning molecular assembly and stoichiometric ratio of the crystal components.     

The conditions of formation of heterometallic complexes in the GeCl4 (SnCl4)-citric acid-M(CH3COO)2-H2O systems. The crystal and molecular structures of [M(H2O)6][Ge(HCit)2] · 4H2O (M = Mg, Mn, Co, Cu, Zn) and [M(H2O)6][Sn(HCit)2] · 4H2O (M = Mg, Co, Ni)

Fourteen bis(citrato)germanates(IV) and bis(citrato)stannates(IV) were prepared, in particular, [M(H₂O)₆][Ge(HCit)₂] · 4H₂O (M = Mg (I), Mn (II), Fe (III), Co (IV), Ni (V), Cu (VI), Zn (VII)) and [M(H₂O)₆][Sn(HCit)₂] · nH₂O (M = Mg, n = 4 (VIII); Mn, n = 2 (IX); Fe, n = 4 (X); Co, n = 4 (XI); Ni, n = 4 (XII); Cu, n = 4 (XIII); Zn, n = 3 (XIV)) (H₄Cit is citric acid). The purity and the composition of the products were determined by a set of physicochemical methods including elemental analysis, thermogravimetry, and IR spectroscopy. The structures of I, II, IV, VI, VII, VIII, XI, and XII were determined by X-ray diffractometry. All eight crystals composed of centrosymmetrical octahederal [M(H₂O)₆]²⁺ cations, [Ge(HCit)₂]^2? (or [Sn(HCit)₂]^2?) anions, and crystal water molecules are isostructural. The structural units in I, II, IV, VI, VII, VIII, XI, and XII are connected by systems of hydrogen bonds to form a three-dimensional framework.     

Heteroditopic receptors tris(2-pyridylamide) derivatives derived from hexahomotrioxacalix[3]arene triacetic acid

The lower rim functionalized cone-hexahomotrioxacalix[3]arene tris(2-pyridylamide) derivatives cone- 3 and cone-7 having the hydrogen bonding groups and 2-pyridyl groups were synthesized from triol 1 by a stepwise reaction. Extraction data for alkali metal ions, transition metal ions, and alkyl ammonium ions from water into dichloromethane are discussed. Due to the strong intramolecular hydrogen bonding between the neighboring NH and CO groups, their affinities to metal cations were weakened. The complexation modes of cone-3 and cone -7 with n-BuNH₃Cl and AgSO₃CF₃ were also demonstrated by ¹H NMR titration in CDCl₃. Tris(2-pyridylamide) derivatives cone-3 and cone-7 can complex with n-butyl ammonium ion and silver cation at the same time to form the heteroditopic complexation.     

Synthesis and crystal structure of Mn(II) and Hg(II) compounds and solution studies of Mn(II), Zn(II), Cd(II) and Hg(II) compounds based on piperazinediium pyridine-2,3-dicarboxylate

Novel metal organic frameworks including {(pipzH₂)[Mn(py-2,3-dc)₂]·7.75H₂O}_n, 1, {(pipzH₂)[Zn(py-2,3-dc)₂]·4H₂O}_n, 2, [Cd(py-2,3-dc)(H₂O)₃]_n, 3 and {(pipzH₂)[Hg₄Cl₁₀]}_n, 4, in which pipz is piperazine and py-2,3-dcH₂ is pyridine-2,3-dicarboxylic acid were synthesized applying a proton transfer ion pair i.e. (pipzH₂)(py-2,3-dcH)₂ and corresponding metallic salts and studied by IR, ¹H NMR, ¹³C NMR spectroscopy and single crystal X-ray diffractometry. The space group of compounds 1 and 4 are P2₁/c and C2/c of monoclinic system, respectively. The crystal dimensions are a = 20.108(2) Å, b = 19.910(2) Å, c = 12.997(1) Å, β = 94.354(2)° for 1 and a = 15.940(1) Å, b = 11.2690(9) Å, c = 11.1307(9) Å, β = 90.685(2)° for 4. The crystal structures of 2 and 3 have been reported previously. However, their solution studies are discussed here. The compounds had all polymeric structures. Although Zn^II, Cd^II and Hg^II were elements of the same group, their behavior against the ion pair was essentially different. Various supramolecular interactions mainly hydrogen bonds of the type O-H?O, N-H?O, C-H?O, N-H…Cl and C-H?Cl were observed in the structures. There was an unusual and huge water cluster in the structure of compound 1. The solution states of compounds 1–4 were studied and reported. The protonation constants of pipz and py-2,3-dc, the py-2,3-dc/pipz proton transfer equilibrium constants and stoichiometry and stability of the system with Mn²⁺, Zn²⁺, Cd²⁺ and Hg²⁺ ions in aqueous solution were investigated by potentiometric pH titrations.     

Crystal structures of nitrato-{4-bromo-2-[(2-hydroxyethylimion)methyl]phenolo}-(3,5-Dibromopyridine)copper and nitrato-{2,4-dibromo-6-[(2-hydroxyethylimino)methyl]phenolo}-(3,5-dibromopyridine)copper

The crystal structures of nitrato-{4-bromo-2-[2-hydroxyethylimino)methyl]phenolo}-(3,5-dibromopyridine)copper (I) and nitrato-{2,4-dibromo-6-[(2-hydroxyethylimino)methyl]phenolo}-(3,5-dibromopyridine)copper (II) are determined. The crystals of compound I are orthorhombic: a = 14.157(3) Å, b = 15.420(3) Å, c = 17.494(4) Å, space group Pbca, Z = 8, R = 0.067. The crystals of compound II are monoclinic: a = 10.675 Å, b = 13.973 Å, c = 14.007 Å, β = 111.92°, space group P2₁/n, Z = 4, R = 0.0464. In the structures of compounds I and II, the copper atom coordinates, correspondingly, singly deprotonated 4-bromo-2-[(2-hydroxyethylimino)methyl]phenol and 2,4-dibromo-6-[(2-hydroxyethylimino)methyl]phenol molecules, and 3,5-dibromopyridine, and the nitrate ion. The coordination polyhedron of the copper ion in complexes I and II is a slightly distorted tetragonal pyramid. The bases of the pyramids are formed by the imine and pyridine nitrogen atoms and the phenolic and alcoholic oxygen atoms, and the axial vertices are occupied by the oxygen atoms of the monodentate nitrato groups. In the complexes under study, the six-membered metallocycles have asymmetric gauche conformation. In crystal, complexes I are united, due to the slip plane a, through bifurcate hydrogen bonds into infinite chains along the direction [100]. Complexes II in crystal form two-dimensional networks by means of hydrogen bonds.     

Synthesis and crystal structure of dehydrated, deaminated, and dealuminated zeolite Y (FAU): single-crystal structure of |Na33H26(Al5O4)|[Si126Al66O384]-FAU

Host–guest complexes of Docetaxel 1, an anti-cancer drug have been isolated and crystal structures are described. Docetaxel crystallized in the 1:1 molar ratio with n-butanol, dimethylformamide (DMF) and acetonitrile (ACN) during crystallization from the respective solvents. In all the three complexes (1 · n-butanol, 1 · DMF and 1 · ACN), docetaxel formed a host framework through hydrogen bonds and the guest solvent molecules occupied the channels. The host is hydrogen bonded to the guest molecules through hydroxyl moieties. Interestingly, 1 · n-butanol, 1 · DMF and a literature 1 · CH₃OH · H₂O (1:1:1) host–guest complexes are isomorphs. Further, 1 · ACN complex unit cell parameters are similar (same space group) to the marketed docetaxel trihydrate polymorph (form A).     

Benzoylacetonate and its fluorinated derivatives as ligands for Co(II) complexes: the effect of the presence of fluorine atoms on the crystal packing

The influence of the introduced fluorine atoms to diketonato backbone exerted on the crystal packing was studied on cobalt(II) bis(4,4,4-trifluoro-1-phenylbutane-1,3-dionato-κ ² O,O′) compounds with pyridine (1), 2,2′-bipyridine (2) and 1,10-phenanthroline (4), and cobalt(II) bis(benzoylacetonato-κ ² O,O′) compound with 2,2′-bipyridine (3). The solid-state structures of 1–4 were determined by single crystal X-ray analysis. The coordination of Co(II) is octahedral in all four compounds. The differences in crystal packing of 1 with regard to the known complexes with non-fluorinated analogue and 4,4,4-trifluoro-1-(4-fluorophenyl)butane-1,3-dionate were observed. Unit cell parameters of 2·½C₇H₈ and 3·½C₇H₈ slightly differ, but they have similar crystal packing dominated by the π–π interactions. Strong π–π interactions and weak C–H···π(arene) and C–F···π(arene) interactions are present in 2–4, while no significant intermolecular interactions are present in 1.     

New metal organic frameworks incorporating the ditopic macrocyclic ligand dipyridyldibenzotetraaza[14]annulene

The synthesis and crystal structures of three new metal organic frameworks of type [Zn(L-2H)] _n (1), {[ZnLCl₂](CH₃CN)_0.5(DMF)_0.5(H₂O)_0.5} _n (2) and {[CdL(DMF)(NO₃)₂]·DMF} _n (3), all based on the dipyridyl-derivatised macrocycle, dipyridyldibenzotetraaza[14]annulene (L), are reported along with the X-ray structure of the protonated metal-free ligand as its perchlorate salt, [(HL)(ClO₄)] _n (4). In [Zn(L-2H)] _n , the zinc ion occupies the macrocyclic cavity, being bound to the N₄-donor set of the macrocyclic ring in its doubly deprotonated form. Each zinc atom is also axially bound by a pyridyl moiety from an adjacent complex, resulting in formation of an infinite one-dimensional chain of the ??herringbone?? type in which pairs of macrocyclic complexes interact via face-to-face ?ШC?? stacking interactions. In contrast, the zinc ion in {[ZnLCl₂](CH₃CN)_0.5(DMF)_0.5(H₂O)_0.5} _n does not occupy the macrocyclic cavity but is bound to a pyridyl nitrogen from two ligands such that it acts as a bridge between macrocyclic units and results in the generation of a one-dimensional chain. Two chloro ligands also bind to each zinc centre to yield a distorted tetrahedral coordination geometry. Offset ?ШC?? stacking occurs between adjacent chains involving alternate macrocycles in each chain, giving rise to a zig-zag arrangement. Pairs of interacting chains pass through the above-mentioned chains to generate further ?ШC?? stacking to yield an overall three-dimensional structure that contains large ellipsoidal-shaped channels. In {[CdL(DMF)(NO₃)₂]·DMF} _n the cadmium ion again does not occupy the macrocyclic cavity but acts as a bridge between macrocycles to once again afford a linear chain structure. Each cadmium is bound to two pyridyl groups (arising from different molecules of L), two nitrato ligands and one oxygen-bound dimethylformamide molecule to yield a distorted pentagonal bipyramidal coordination geometry. The protonated ligand, [(HL)(ClO₄)] _n , adopts a linear chain structure in which one pyridyl group is protonated and interacts intermolecularly via a hydrogen bond with the non-protonated pyridyl group of an adjacent macrocyclic unit to yield a hydrogen-bonded linear chain structure.     

Synthesis and antimicrobial activity of novel chalcone derivatives

A series of novel 3-[N, N-bis(2-hydroxyethyl)-amino]-chalcone derivatives 3a–3j were synthesized by the aldol condensation of [N, N-bis(2-hydroethyl)-3-amino]-acetophenone 2 with aromatic aldehydes. Their structures were further confirmed by ESI-HRMS, ¹H NMR, IR and elemental analysis. X-ray analysis reveals crystal 3b is a monoclinic system with P2₁/n space group. The antimicrobial activities of the newly synthesized chalcones in vitro were evaluated and the results indicated that most compounds presented moderate to good antimicrobial activities, especially the antifungal capability. Compounds 3a, 3d, 3f and 3g revealed obvious potency against Candida albicans with MIC values of 32 μg/mL, which were better compared with others.     

Preparation and reactions of optically active cyanohydrins using the (R)-hydroxynitrile lyase from Prunus amygdalus

Cyanuration of 2-naphthaldehyde (1) and 5-methyl-2-furaldehyde (2) yielded the racemic 2-hydroxy-2-(β-naphthyl)ethanenitrile (R,S)-3 and 2-hydroxy-2-(5-methyl-2-furyl)ethanenitrile (R,S)-5, respectively. The same reaction can be completed by using acetone cyanohydrin (4) as a transcyanating agent. The optically active (R)-3 and (S)-5 could be respectively obtained by hydrocyanation of 1 and 2 using (R)-hydroxynitrile lyase (R)-PaHNL [EC 4.1.2.10] from almonds (Prunus amygdalus) as a chiral catalyst. Cyanohydrins 3 and 5 in their racemic and optically active forms undergo a number of transformations which involve either the hydroxyl group or the cyanide function. Moreover, derivatization of 3 and 5 with (S)-Naproxen®chloride (S)-14 gave the respective diastereoisomers. The optical activity of (R)-3 and (S)-5 as well as their derivatives were recorded. The postulated structures for the new products were supported with compatible elementary and spectroscopic (IR, ¹H NMR, ¹³C NMR, MS, and single crystal X-Ray crystallography) analyses. The antimicrobial activity of some selected racemic new products and their respective optically active analogues were also undertaken.     

Synthesis and characterization of a series of chiral NHC–Pd complexes derived from l-phenylalanine

The synthesis of a series of chiral Pd(L)PyBr₂ (3a–3e) and Pd(L)PyCl₂ (4d and 4e) complexes from l-phenylalanine is presented (L = (S)-3-allyl-4-benzyl-1-(2,6-diisopropylphenyl)-imidazolin-2-ylidene (a), (S)-4-benzyl-1-(2,6-diisopropylphenyl)-3-(naphthalen-2-ylmethyl)imidazolin-2-ylidene (b), (S)-4-benzyl-3-(biphenyl-4-ylmethyl)-1-(2,6-diisopropylphenyl)imidazolin-2-ylidene (c), (S)-4-benzyl-1-(2,6-diisopropylphenyl)-3-(naphthalen-1-ylmethyl)imidazolin-2-ylidene (d) or (S)-4-benzyl-1-(2,6-diisopropylphenyl)-3-(2,4,6-trimethylbenzyl)imidazolin-2-ylidene (e). The complexes were characterized by physicochemical and spectroscopic methods, and the X-ray crystal structures of 3a–3c and 4d are reported. In each case, there is a slightly distorted square-planar geometry around palladium, which is surrounded by imidazolylidene, two trans halide ligands and a pyridine ligand. There are π–π stacking interactions in the crystal structures of these complexes. Complex 3a showed good catalytic activity in the Cu-free Sonogashira coupling reaction under aerobic conditions.     

Intra- and intermolecular interactions in crystals ofN′-furfurylideneisonicotinic hydrazide and related compounds. IR spectroscopic and X-ray diffraction studies

The reaction of isonicotinic hydrazide with furfural yieldedN′-furfurylideneisonicotinic hydrazide. IR spectroscopic studies demonstrated that crystallization from different solvents afforded products with an intermolecular NH...O=C hydrogen bond. Conditions of crystallization were chosen under which single crystals with the NH...N_Py intermolecular hydrogen bond (1) were grown. X-ray diffraction analysis demonstrated that the molecular and crystal structure of1 is identical to that ofN′-thienylideneisonicotinic hydrazide (2). The crystal structure consists of layers. The molecules in the layers are linked in zigzag chains through NH...N_Py intermolecular hydrogen bonds. The molecules of the adjacent chains (in the layer) are linked through C=O...H?C intermolecular hydrogen bonds between the O atom of the carbonyl group and the α-H atom of the furan ring. (In the structure of2, the chains are linked through specific intermolecular interactions of different nature but with approximately identical energy.) The replacement of the thiophene fragment (2) by the furan ring (1) is accompanied by a change in the intramolecular electronic effects, which is reflected both in the geometric and spectral characteristics of the molecules in the crystal.     

Informative secondary chiroptics in binary molecular organogel systems for donor-acceptor energy transfer

Pyrene-doped l-glutamide-based lipidic derivatives with different alkyl lengths (C_n-g-Pyr; n = 4, 8 and 12) were newly synthesized. All of the C_n-g-Pyr dissolved and showed thermotopically and lyotropically-induced excimer formations accompanied by induction of the positive Cotton effect in their CD spectra, indicating chirally ordered stacking. However, when C₄-g-Pyr and C₁₂-g-Pyr were mixed in a certain molar ratio, an unusual CD pattern from positive to negative ones was observed. In this study, energy transfer efficiency was investigated in a binary system of C_n-g-Pyr with C₁₂-g-TPP. The results revealed that simple modification of the alkyl length of C_n-g-Pyr enables enhancement of the energy transfer efficiency with C₁₂-g-TPP.     

Crystal engineering with 2,1,3-benzoselenadiazole and mercury(II) chloride

The reactions of HgCl₂ with 2,1,3-benzoselenadiazole (bsd) in methanol afforded the polymeric complexes [HgCl₂(bsd)₂]_n (1) and [HgCl₂bsd]_n (2) in good yields. The crystal structures of 1 and 2 have been determined by single-crystal X-ray crystallography. Complex 1 is an one-dimensional (1D) polymer and consists of (HgCl₂)_n chains running parallel to the c-axes. Complex 2 is a two-dimensional (2D) polymer and consists of (HgCl₂)_n chains running parallel to the a-axes and being further bridged by bsd molecules to create a layer lying parallel to the ab plane. Both crystal structures are dominated by π···π interactions between the bsd molecules, while the presence of N···Se interactions increases the dimensionality in 1. Characteristic IR data are discussed in terms of the nature of bonding in the structures of the two complexes.     

Crystal structures and luminescence of a series of cadmium(II) complexes based on isophorone derivative containing imidazolyl

Three new complexes, [CdL₂(CH₃COO)₂(H₂O)₂] (I), CdL₂Br₂ (II), CdL₂I₂ (III), have been successfully synthesized by self-assembly of corresponding metal salts with (E)-2-(3-(4-(1H-imidazole-1-yl)styryl)-5,5-dimethylcyclohex-2-enylidene)malononitrile (L). The structures of the complexes were determined by single crystal X-ray diffraction analysis (CIF file CCDC nos. 957831 (I), 957792 (II), 957832 (III)). In complex I, central metal is six-coordinated and the crystal packing shows a 3D supramolecular framework. Complexes II and III display the similar 2D supramolecular structures in which the central metals are four-coordination. The luminescent properties were investigated.     

Construction of two new 3D supramolecular networks with 3-pyridyl-4-yl-benzoic acid ligands: Synthesis, characterization, and luminescence

Two new coordination polymers with 3-pyridyl-4-yl-benzoic acid (3,4-HPybz), namely, [Zn(3,4-Pybz)₂ · 2H₂O] _n (I) and [Ag(3,4-Pybz)(3,4-HPybz)] _n (II), have been synthesized and characterized by elemental analysis, IR spectroscopy, thermogravimetric analysis, and single crystal X-ray diffraction. Compound I crystallizes in the triclinic system and has P1 space group. Complex I is an infinite 1D chain polymer and the infinite chains array uniformly in a 3D supramolecular network which posesses abundant O-H...O hydrogen-bonding interactions among the occupied and unoccupied carboxylate O atoms and the coordinated water molecules; compound II crystallizes in the triclinic system and has $P\bar 1$ space group, II is an infinite chain with the repeat sequence of Ag1(I)-Ag2(I)-Ag1(I), in which weak intermolecular interactions play a key role in forming the final 3D supramolecular architectures. The photoluminescences and lifetime of I and II in the solid state have been investigated.     

Scorpionate nickel complexes with dicarboxylic acid ligands: influence of different spanning dicarboxylato co-ligands on the structures

Three new scorpionate nickel complexes [Tp*Ni(Hglu)(H₂O)]·EtOH (1), Tp*Ni(Haze)(MeOH) (2), and Tp*Ni(HTA)(H₂O) (3) (Tp*?=?hydrotris(3,5-dimethylpyrazolyl)borate) with different spanning dicarboxylo co-ligands (H₂glu?=?glutaric acid, H₂aze?=?azelaic acid, H₂TA?=?tetradecane diacid) were synthesized by solution methods at room temperature. X-ray crystallographic analyses of complexes 1?C3 demonstrate that these three octahedral Ni scorpionate complexes each contain an anionic chelating dicarboxylic acid, O₂C(CH₂) _n COOH, n?=?3, 7, and 12, respectively. The sixth coordination site is occupied by an ethanol, methanol, or water that is hydrogen bonded to the terminal carboxylic acid end of the anionic dicarboxylic acid ligand from a different Tp*Ni complex in the crystal lattice. Through these abundant hydrogen bond interactions, complexes 1 and 2 form 2D hydrogen bonding network structures, respectively, while complex 3 has a 1D infinite double-chain structure. The results of quantum mechanical calculations and thermogravimetric analyses on these complexes are presented and discussed.     

Synthesis, structural features and biological activities of three asymmetric pyridazine–triazole coordination polymers

The complexes [CuL₂Cl₂]_n (1), [CoL₂Cl₂(H₂O)₂]·L (2) and [MnL₂Cl₂(H₂O)₂]·L (3) (L = 3-chloro-6-(1H-1,2,4-triazol-1-yl) pyridazine) were synthesized and characterized by physicochemical and spectroscopic methods. X-ray crystallographic analysis reveals that the Cu(II) center of complex 1 is located in a slightly distorted tetragonal pyramidal environment and bridged by chlorine atoms to generate infinite 1D chains, which are further connected into 2D supramolecular structures by C–H…Cl hydrogen bonds. The Co(II) and Mn(II) atoms in complexes 2 and 3 both have a distorted octahedral coordination sphere, and the crystal lattices include hydrogen bonds and π–π stacking interactions to yield 3D supramolecular frameworks. The antioxidant activities (influence on O₂ ^?? and ^?OH) and antibacterial activities of the ligand L and its three complexes were also investigated.