Formation of [M − nH + mNa](m−n)+ and [M − nH + mK](m−n)+ ions in electrospray mass spectrometry of peptides and proteins

The [M - nH + mNa](m-n)+ and [M - nH + mK](m-n)+ ions are common in the electrospray mass spectra of proteins and peptides. The feasibility of forming these ions in the gas phase via collision activation and/or ion-molecule reaction is investigated. Sodium and potassium affinities of the N-methylacetamide anion, the acetate anion, and the 1-propanamide anion have been calculated using density functional theory at the B3LYP/6-311+ +G(d,p) level of theory. These anions were chosen as models for the functional groups on a protein or peptide. These affinity values are then used to calculate reaction enthalpies of alkali hydroxides, chlorides, and hydrates with N-methylacetamide, acetic acid, the acetate anion, and 1-propanamine, model reactions that may lead to formation of the [M - nH + mNa](m-n) and [M - nH + mK](m-n)+ ions. It is found that a number of these reactions are exothermic or slightly endothermic (deltaH(o) < + 20 kcal/mol) and are accessible after collision activation in the lens region. The potential energy hypersurfaces of model reactions between NaOH and formamide as well as NaCl and formamide show relatively flat surfaces devoid of significant barriers.     

New methods of preparation of hydroxy-closo-decaborates [B10H10 − n (OH) n ]2− (n = 1, 2)

New methods of preparation of hydroxy-closo-decaborates [B₁₀H_{10 ? n} (OH) _n ]^2? (n = 1, 2) that are based on the reaction of anions [B₁₀H_{10 ? n} (OAc) _n ]^2? and alkoxyethylidenoxonio-closo-decaborates [2-B₁₀H₉OC(OR)CH₃]^? with aqueous solution of hydrazine are proposed. The obtained compounds were characterized by IR, ESI/MS, and NMR (¹H, ¹¹B, ¹³C) spectroscopy.     

Tuning the Reactivities of the Heteronuclear [AlnV3−nO7−n]+ (n=1, 2) Cluster Oxides towards Methane by Varying the Composition of the Metal Centers

The thermal gas-phase reactions of [Al₂VO₅]⁺ and [AlV₂O₆]⁺ with methane have been explored by using Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry complemented by high-level quantum chemical calculations. Both cluster ions chemisorbed methane as the major reaction channels at room temperature. [Al₂VO₅]⁺ could break only one C−H bond to liberate CH₃, whereas [AlV₂O₆]⁺ exhibited higher oxidizing ability such that it brings about the selective generation of formaldehyde. Mechanistic aspects are revealed and the crucial roles of the metal centers are discussed.     

Acceleration of the reaction OH + CO → H + CO2 by vibrational excitation of OH

The collision complex formed from a vibrationally excited reactant undergoes redissociation to the reactant, intramolecular vibrational relaxation (randomization of vibrational energy), or chemical reaction to the products. If attractive interaction between the reactants is large, efficient vibrational relaxation in the complex prevents redissociation to the reactants with the initial vibrational energy, and the complex decomposes to the reactants with low vibrational energy or converts to the products. In this paper, we have studied the branching ratios between the intramolecular vibrational relaxation and chemical reaction of an adduct HO(v)-CO formed from OH(X(2)Π(i)) in different vibrational levels v = 0-4 and CO. OH(v = 0-4) generated in a gaseous mixture of O(3)/H(2)/CO/He irradiated at 266 nm was detected with laser-induced fluorescence (LIF) via the A(2)Σ(+)-X(2)Π(i) transition, and H atoms were probed by the two-photon excited LIF technique. From the kinetic analysis of the time-resolved LIF intensities of OH(v) and H, we have found that the intramolecular vibrational relaxation is mainly governed by a single quantum change, HO(v)-CO → HO(v-1)-CO, followed by redissociation to OH(v-1) and CO. With the vibrational quantum number v, chemical process from the adduct to H + CO(2) is accelerated, and vibrational relaxation is decelerated. The countertrend is elucidated by the competition between chemical reaction and vibrational relaxation in the adduct HOCO.     

Negative ion photoelectron spectroscopy of solvated electron cluster anions, (H2O) n − and (NH3) n −

The photodetachment spectra of (H₂O) _n ^=2?69/? and (NH₃) _n ^=41?1100/? have been recorded, and vertical detachment energies (VDEs) were obtained from the spectra. For both systems, the cluster anion VDEs increase smoothly with increasing sizes and most species plot linearly withn ^?1/3, extrapolating to a VDE (n=∞) value which is very close to the photoelectric threshold energy for the corresponding condensed phase solvated electron system. The linear extrapolation of this data to the analogous condensed phase property suggests that these cluster anions are gas phase counterparts to solvated electrons, i.e. they are embryonic forms of hydrated and ammoniated electrons which mature with increasing cluster size toward condensed phase solvated electrons.     

Energetics of OH− or H+ dependent nitrate uptake by Catharanthus roseus cells: Electrophysiological effects

The electrical potential across the plasmalemma and the tonoplast were recorded, in Catharanthus roseus cells, by pushing a glass microelectrode through a cell with the tip consecutively in the cell wall, the cytoplasm and the vacuole. The electrical potential difference between the cytoplasm and the external medium (E_CO) was about −71 mV and the mean potential difference at the tonoplast (E_VC) about +22 mV. In culture conditions, during the first two days following the transfer of the cells into a fresh medium, nitrate uptake by the cells was marked by a hyperpolarization of the plasmalemma (about −18 mV) and a simultaneous alkalinization of the external medium (1.3 pH units). Similar data were also obtained in short experiments (less than 10 min) with cells bathed in nitrate solutions (10 mM NaNO₃). Evidence for the existence of nitrate cotransport with H⁺ or OH⁻ as counterions at the plasmalemma is discussed.     

The structure of gas-phase [Al·nH2O]+: hydrated monovalent aluminium Al+ (H2O)n or hydride-hydroxide HAlOH+ (H2O)(n-1)?

Theoretical studies predict that [Al·nH(2)O](+) clusters are present as hydride-hydroxide species HAlOH(+)(H(2)O)(n-1) in gas-phase experiments, energetically favoured by 200 kJ mol(-1) over Al(+)(H(2)O)(n). After collisions with D(2)O, however, no H/D scrambling occurs between H(2)O and D(2)O in clusters with n > 38, indicating that large clusters are present as the higher-energy isomers Al(+)(H(2)O)(n).     

Theoretical study of H2 elimination from [B n H n + 1]− monoanions (n = 6–9, 11)

Transition states of elementary reactions of H₂ molecule elimination from [B _n H _{n + 1}]^? anions (n = 6–9, 11) in which nucleophilic/electrophilic vacancies form at boron atoms have been localized by the density functional theory method (in the B3LYP/6-311++G** approximation). For a series of [B _n H _{n + 1}]^? anions (n = 6–12), the activation barriers to H2 elimination have been compared to consider the possibility of substitution for exopolyhedral hydrogen atoms by the mechanism with the first rate-limiting stage of formation of [B _n H _{n ? 1}]^? (n = 6–12) intermediates with a vacant “bare” vertex of the boron cluster. For the [B _n H _n ]^2?, [B _n H _{n + 1}]^?, and [B _n H _{n ? 1}]^? anions (n = 6–12), the electronic chemical potential μ and Pearson hardness η have been evaluated since these characteristics make it possible to assess the propensity of different reagents to react with each other in terms of the empirical HSAB principle (soft with soft and hard with hard). The application of this principle is exemplified by the interaction of the [B₁₀H₉]^? and [B₁₂H₁₁]^? anions with acetonitrile CH₃CN, furan C₄H₄O, and 18-crown-6.     

Kinetic studies on H+- and OH−-catalysed aquation of bis-aspartatochromium(III)

A potential synthetic biochromium source, bis-aspartatochromium(III) ion (where Asp is a tridentate N,O,O′-ligand, bonded via amine nitrogen and carboxylate oxygen atoms) has been obtained and characterized in aqueous solution. Kinetics of partial dechelation of the complex catalysed by H⁺ and OH^? ions has been studied spectrophotometrically within 0.1–1.0 M HClO₄ and 0.1–1.0 M NaOH ranges under first-order conditions. A linear dependence of the k _obs,H on [H⁺] and independence of the k _obs,OH on [OH^?] were established. The derived rate expression and identification of components of the reaction mixture provide evidence for a reaction mechanism, where the key role in the overall process is the formation of an intermediate species with bidentate N,O-bonded Asp via both spontaneous and H⁺(OH^?)-catalysed reaction paths. The intermediate is meta-stable and at pH 5–7 restores the substrate.     

Spectroscopic influences of ion pairing: Infrared matrix isolation spectra of the M+BF−4 ion pair and its chlorine—fluorine analogs

The matrix isolation technique has been combined with the salt/molecule reaction for the study of contact ion pairs in matrices. The infrared spectrum of the Cs⁺BF⁻₄ ion pair shows a splitting of the triply degenerate BF⁻₄ stretching band due to cesium cation perturbation, with a splitting of nearly 200 cm⁻¹. Normal coordinate calculations support a C_3υ model for the anion, and lead to a value of ΔK of 4.1 for Cs⁺, 4.7 for K⁺ and 3.8 for Tl⁺, where ΔK is the difference in BF stretching force constant between the coordinated fluorine and the non-coordinated fluorines. Similar calculations were carried out for the Cs⁺BCl⁻₄ ion pair, and an optimal value of ΔK = 1.6 was obtained.     

Synthesis and Structure of Two Keggin-Type Heteropolyanions: [VMo12O40]3n− n (1) and [H3PMoVMoVI 11O40]1− (2)

Two Keggin-type heteropolyanions were synthesized and characterized by X-ray crystal structure and elemental analysis as well as infrared spectroscopy. Both K₃[VMo₁₂O₄₀]19H₂O (1) and [N _i (H₂O)₆][H₃PMo^VMo^VI ₁₁O₄₀]₂30 H₂O (2) were prepared in aqueous solution. Compound 1 crystallized in the space group Pm-3m, a=10.6513(1) Å, V=1208.4(3) ų, Z=1. Compound 2 crystallized in the space group R-3 with a=b=13.9669(2) Å, c=42.0075(5) Å, V=7096.71(2) ų, Z=3. The compound 1 contains a {K₆VMo₁₂O₄₀} group in which six potassium ions form a regular {K₆} octahedron. The heteropolyanion [VMo₁₂O₄₀]^3– was capped by six potassium ions and enclosed by {K₆} octahedron. A three-dimensional structure was formed by the buildup of {K₃[VMo₁₂O₄₀]} _n . Compound 2 contains a one-electron reduced heteropolyanion [H₃PMo^VMo^VI ₁₁O₄₀]^1–. Ni²⁺ coordinated by six water molecules as the counter cation balances the negative charge of the molecule.     

Gas phase ion molecule chemistry of tetracarbonyl (η5-cyclopentadienyl) vanadium by Fourier transform ion cyclotron resonance

The kinetics of the reactions between the CpV(CO)₄ molecule and its fragment cations and anions have been examined using Fourier transform ion cyclotron resonance (FTICR) techniques. With 25 eV electron impact ionization the fragment cations V⁺ and CpV(CO)_n=0–4⁺ react principally by charge exchange or by condensation with the parent neutral molecule. Rate constants for these pathways have been determined along with kinetic evidence for the existence of excited state cations. Some of the product cations show unexpected stability despite their large formal electron deficiency. Exchange of carbonyl ligands was also observed. Under 2.5 eV electron impact, only two anions are produced: CpV(CO)_n=2,3⁻, both of which are unreactive with the parent neutral.     

[M + Fe − 5H]2− peptide ion composition verified by Fourier transform mass spectrometry accurate mass and tandem mass spectrometry analyses

Previously, the unusual ion composition [M + Fe - 5H]2- had been proposed as the major species observed when a gamma-carboxy glutamate-containing glyco-peptide was analyzed with electrospray ionization in the negative ionization mode. The sequence assignment of this highly post-translationally modified peptide was based on the mass analysis using a quadrupole ion trap together with information from both Edman and DNA sequencing. Because there was little precedent for the loss of five protons from a ferric cationized peptide, we utilized Fourier transform mass spectrometry accurate mass and tandem mass spectrometry analyses to verify the peptide ion composition.     

Study of structural ordering in Hg1−xCdxTe by 125Te NMR

High-resolution solid-state NMR experiments are used to study bonding in the semiconductor alloy system Hg_1−xCd_xTe over a broad range of values of x. Based on measurement of the ¹²⁵Te chemical shift and its sensitivity to coordination effects, which we demonstrate for the first time, it can be concluded that Hg and Cd do not distribute themselves randomly in the alloy lattice.     

Halide substitutions in the [Rh2(O f2 p− )(OH)2(H2O) n ]3+ complex

Summary Transition metal complexes containing activated dioxygen continue to attract considerable attention and are widely used as models, either as oxygen carriers or as catalysts in biological and industrial oxidations ^(1,2).Cobalt complexes containing the coordinated O₂ molecule are well known^(3,4), but the rhodium analogues are rare^(5–8). The known complexes with coordinated O₂ are rhodium(III) compounds containing strong nitrogen donor ligands.Our recent studies have focused on a synthesis of dioxygen rhodium derivatives in which a superoxide anion (O _f2 ^p– ) is bound to the [Rh^III—Rh^III] core surrounded by other donor molecules, e.g. H₂O, RCO _f2 ^p– (7,8), to investigate the effect of a coordination sphere of the metal centre on the redox properties of the O _f2 ^p– radical combined to it⁽⁹⁾.The [Rh₂(O _f2 ^p– )(OH)₂(H₂O) _n ]³⁺ cation, the product of oxidative addition of dioxygen to the [Rh₂(H₂O)₁₀]⁴⁺ dimer, was isolated by us and examined in aqueous HC1O₄ ^(7,9). So far we have been unable to isolate its solid but the water molecules coordinated to the [Rh₂(O _f2 ^p– )-(OH)₂] ³⁺ moiety were found to undergo substitution relatively easily⁽⁸⁾.     

Abstraction versus insertion in the reaction O(1D2)+H2→OH(υ″ = 2) + H

The product hydroxyl radical arising from the reaction O(¹D₂)+H₂→OH+H was detected by LIF following excitation of the off-diagonal transition OH(A²Σ⁺, υ′=1←X²Π, υ″=2) in the region 348–357 nm. The rotational population distribution in υ″=2 appears to be inverted and quite similar to that previously reported for υ″=0 and 1. Because rotationally cool OH was not observed, there is no evidence for the existence of an abstractive pathway in which the subject reaction occurs without the initial formation, via insertion, of a chemically activated HOH collision complex.     

An investigation of enhanced secondary ion emission under Au n + (n=1–7) bombardment

We investigate the mechanism of the nonlinear secondary ion yield enhancement using Au(n)+ (n = 1, 2, 3, 5, 7) primary ions bombarding thin films of Irganox 1010, DL-phenylalanine and polystyrene on Si, Al, and Ag substrates. The largest differences in secondary ion yields are found using Au+, Au2+, and Au3+ primary ion beams. A smaller increase in secondary ion yield is observed using Au5+ and Au7+ primary ions. The yield enhancement is found to be larger on Si than on Al, while the ion yield is smaller using an Au+ beam on Si than on Al. Using Au(n)+ ion structures obtained from Density Functional Theory, we demonstrate that the secondary yield enhancement is not simply due to an increase in energy per area deposited into the surface (energy deposition density). Instead, based on simple mechanical arguments and molecular dynamics results from Medvedeva et al, we suggest a mechanism for nonlinear secondary ion yield enhancement wherein the action of multiple concerted Au impacts leads to efficient energy transfer to substrate atoms in the near surface region and an increase in the number of secondary ions ejected from the surface. Such concerted impacts involve one, two, or three Au atoms, which explains well the large nonlinear yield enhancements observed going from Au+ to Au2+ to Au3+ primary ions. This model is also able to explain the observed substrate effect. For an Au+ ion passing through the more open Si surface, it contacts fewer substrate atoms than in the more dense Al surface. Less energy is deposited in the Si surface region by the Au+ primary ion and the secondary ion yield will be lower for adsorbates on Si than on Al. In the case of Au(n)+ the greater density of Al leads to earlier break-up of the primary ion and a consequent reduction in energy transfer to the near-surface region when compared with Si. This results in higher secondary ion yields and yield enhancements on silicon than aluminum substrates.     

Reactions of e aq' − H and OH with picolinic acid studied by pulse radiolysis

Rate constants for the reaction of the primary species of water radiolysis, viz. e _aq' ^– , H and OH, with picolinic acid have been determined at various pHs. The semi-reduced species exhibits _max at 305 and 350 nm. It is a strong reductant and has two pK_a values of 1 and 5.7. The OH adduct of this compound also exhibits two pK_a s at 2.1 and 5.2. H-atom reaction with picolinic acid gives rise to a mixture of species.