Multicomponent reactions in the synthesis of dihydropyrimidine-containing podands having tuberculostatic activity

Dihydropyrimidinethione podands, as well as podands containing 2-thienyl substituents have been synthesized via the multicomponent Biginelli reaction. Tuberculostatic activity of the novel podands was shown to depend on the polyether unit length. In particular, activity of dihydropyrimidinethione podands against laboratory strains of Mycobacterium tuberculosis, H₃₇Rv, M. avium, M. terrae, and the clinical strain of multi-drug resistant M. tuberculosis (MDR), increases with a shortening of the polyether unit length.     

Basicity of isomeric ditetrazolylbenzenes and their <Emphasis Type="Italic">N-tert</Emphasis>-butyl derivatives

The basicity constants \((pK_{BH^ + } ,pK_{BH^{2 + } } )\) of 1,2-, 1,3-, and 1,4-bis(tetrazol-5-yl)benzenes and their N-tert-butyl derivatives in aqueous sulfuric acid and the dissociation constants (pK _HB) of the corresponding H-complexes with p-fluorophenol in carbon tetrachloride were determined by UV and IR spectroscopy. Mono-and diprotonation of isomeric ditetrazolylbenzenes is observed in the acidity range (H ₀) from ?1 to ?5 (\(pK_{BH^ + } \) ?2.5 to ?3.0; \(pK_{BH^{2 + } } \) ?3.8 to ?4.9). Introduction of a tert-butyl group into the 2-position of the heteroring almost does not affect the basicity of ditetrazolyl benzenes. Among the examined compounds, 1,2-bis(2-tert-butyltetrazol-5-yl)benzene is the strongest proton acceptor with respect to p-fluorophenol as standard proton donor, presumably due to formation of a complex with bifurcated (three-center) hydrogen bond.     

Synthesis and redox characteristics of iron complexes with triphenylsubstituted corrols in the presence of argon and oxygen

para-Substituted iron meso-triphenylcorrole derivatives [Fe(ms-p-R-Ph)₃Cor] containing electron- donating (R = OMе) and electron-drawing (R = NO₂) groups in phenyl rings are synthesized and characterized by ¹H NMR, electronic absorption spectroscopy, and mass spectrometry. The effect of the nature of functional groups within iron complexes on the redox processes involving these complexes in water–alkaline solutions is analyzed. Electronic transitions in the ligand (E_red/ox = 0.820–0.850 V) and the metal (E_red/ox =–0.005 to–0.190 and–0.790 to–0.870 V for the Fe⁴⁺ ? Fe³⁺ and Fe³⁺ ? Fe²⁺ transitions, respectively) were found in the cyclic voltammograms. Iron in the synthesized complexes I–IV under the conditions under study exists in the +4 oxidation state. The activity of iron complexes in electroreduction of molecular oxygen significantly depends on the nature of a substituent, increases in the series: Fe(ms-p-NO₂Ph)₃Cor (II) < Fe(ms-p-MeOPh)₃Cor (I) < Fe(β-Br)₈(ms-Ph)₃Cor (IV) < Fe(ms-Ph)₃Cor (II) and is caused by the fact that low-energy redox electron transitions occur in the molecules. The electrocatalytic activity of iron corroles is much higher than that of metal porphyrins with a similar structure.     

Structural insight into the inactivation of <Emphasis Type="Italic">Mycobacterium tuberculosis</Emphasis> non-classical transpeptidase Ldt<Subscript>Mt2</Subscript> by biapenem and tebipenem

Background

The carbapenem subclass of β-lactams is among the most potent antibiotics available today. Emerging evidence shows that, unlike other subclasses of β-lactams, carbapenems bind to and inhibit non-classical transpeptidases (L,D-transpeptidases) that generate 3 → 3 linkages in bacterial peptidoglycan. The carbapenems biapenem and tebipenem exhibit therapeutically valuable potencies against Mycobacterium tuberculosis (Mtb).

Results

Here, we report the X-ray crystal structures of Mtb L,D-transpeptidase-2 (Ldt_Mt2) complexed with biapenem or tebipenem. Despite significant variations in carbapenem sulfur side chains, biapenem and tebipenem ultimately form an identical adduct that docks to the outer cavity of Ldt_Mt2. We propose that this common adduct is an enzyme catalyzed decomposition of the carbapenem adduct by a mechanism similar to S-conjugate elimination by β-lyases.

Conclusion

The results presented here demonstrate biapenem and tebipenem bind to the outer cavity of Ldt_Mt2, covalently inactivate the enzyme, and subsequently degrade via an S-conjugate elimination mechanism. We discuss structure based drug design based on the findings and propose that the S-conjugate elimination can be leveraged to design novel agents to deliver and locally release antimicrobial factors to act synergistically with the carbapenem carrier.

     

Synthesis and properties of <Emphasis Type="Italic">N</Emphasis>-(alkenylidene)trifluoromethanesulfonamides

N-Alkenylidenetrifluoromethanesulfonamides TfN=CH–CR=C(Me)R′ (R, R′ = H, Me) have been synthesized by reaction of N-sulfinyltrifluoromethanesulfonamide TfNSO with (E)-but-2-enal, (E)-2-methylbut- 2-enal, and 3-methylbut-2-enal. Despite greater stability of N-alkenylidenetrifluoromethanesulfonamides relative to their propargyl isomers TfNHCH₂C≡CR, no rearrangement of the latter into the former occurs due to the presence of an acidic NH proton, which hampers formation of carbon-centered anion.     

The thermodynamic properties of the [(Me<Subscript>3</Subscript>Si)<Subscript>7</Subscript>C<Subscript>60</Subscript>]<Subscript>2</Subscript> fullerene complex

The temperature dependence of the heat capacity C _p ^o of the [(Me₃Si)₇C₆₀]₂ fullerene complex was measured for the first time using precision adiabatic vacuum calorimetry over the temperature range 6.7–340 K and high-accuracy differential scanning calorimetry at 320–635 K. For the most part, the error in the C _p ^o values was about ±0.5%. An irreversible endothermic effect caused by the splitting of the dimeric bond between fullerene fragments and the thermal decomposition of the complex was observed at 448–570 K. The thermodynamic characteristics of this transformation were calculated and analyzed. Multifractal analysis of the low-temperature (T < 50 K) heat capacity was performed, and conclusions were drawn concerning the character of the heterodynamicity of the structure. The experimental data obtained were used to calculate the standard thermodynamic functions C _p ^o (T), H ^o (T) ? H ^o (0), S ^o (T) ? S ^o (0), and G ^o (T) ? H ^o (0) over the temperature range from T → 0 to 445 K and estimate the standard entropy of formation of the compound from simple substances at 298.15 K. The standard thermodynamic properties of [(Me₃Si)₇C₆₀]₂ are compared with those of the (C₆₀)₂ dimer, the [(η⁶-Ph₂)₂Cr]⁺[C₆₀]^?? fulleride, and the initial C₆₀ fullerene.     

Crystal structures of a family of layered coordination polymers containing divalent metal ions (Mn<Superscript>2+</Superscript>, Co<Superscript>2+</Superscript>, Ni<Superscript>2+</Superscript> and Zn<Superscript>2+</Superscript>) and the 3-amino 4-methyl benzoate ion

The syntheses and crystal structures of the layered coordination polymers M(C₈H₈NO₂)₂ [M = Mn (1), Co (2), Ni (3) and Zn (4)] are described. These isostructural compounds contain centrosymmetric trans-MN₂O₄ octahedra as parts of infinite sheets; the ligand bonds to three adjacent metal ions in μ³-N,O,O′ mode from both its carboxylate O atoms and its amine N atom. In each case, weak intra-sheet N–H?O and C–H?O hydrogen bonds may help to consolidate the structure. Crystal data: 1, C₁₆H₁₆MnN₂O₄, M _r = 355.25, monoclinic, P2₁/c (No. 14), a = 10.6534(2) Å, b = 4.3990(1) Å, c = 15.5733(5) Å, β = 95.1827(10)°, V = 726.85(3) ų, Z = 2, R(F) = 0.026, wR(F ²) = 0.067. 2, C₁₆H₁₆CoN₂O₄, M _r = 359.24, monoclinic, P2₁/c (No. 14), a = 10.6131(10) Å, b = 4.3374(4) Å, c = 15.3556(17) Å, β = 95.473(4)°, V = 703.65(12) ų, Z = 2, R(F) = 0.041, wR(F ²) = 0.091. 3, C₁₆H₁₆N₂NiO₄, M _r = 359.02, monoclinic, P2₁/c (No. 14), a = 10.6374(4) Å, b = 4.2964(2) Å, c = 15.2827(8) Å, β = 95.9744(14)°, V = 694.66(6) ų, Z = 2, R(F) = 0.028, wR(F ²) = 0.070. 4, C₁₆H₁₆N₂O₄Zn, M _r = 365.68, monoclinic, P2₁/c (No. 14), a = 10.6385(5) Å, b = 4.2967(3) Å, c = 15.2844(8) Å, β = 95.941(3)°, V = 694.89(7) ų, Z = 2, R(F) = 0.038, wR(F ²) = 0.107.     

Crystal structure of oxonium <Emphasis Type="Italic">trans</Emphasis>(O)-<Emphasis Type="Italic">cis</Emphasis>-(C)-dicyanobis(2-picolinato)cobaltate(III) hydrate: Two types of proton site

The trans(O)-cis(C)-bis(pyridine-2-carboxylato)dicyanocobaltate(III) ions, [Co(Pic)₂(CN)₂]^?, crystallize from acid medium with three water molecules per two crystallographically nonequivalent complexes whose charge is compensated by protons. One of the water molecules forms an oxonium ion (H₃O⁺) with a proton. The other two water molecules bound to each other through a short hydrogen bond O-H…O (2.403(2) Å) and thus forming (H₅O₂)⁺ cations is another proton site. The (H₃O)(H₅O₂)[Co(Pic)₂(CN)₂]₂ crystals are monoclinic: a = 10.7027(7) Å, b = 25.786(1) Å, c = 11.4865(8) Å, β = 91.411(9)°, Z = 4, space group P2₁/n.     

Theoretical modeling of the mechanism of aniline oxidation by singlet O<Subscript>2</Subscript>

The mechanism of aniline oxidation by singlet oxygen was studied by the DFT-PBE/L2 method. According to the calculations, aniline endoperoxide cannot participate in the reaction because of its energy instability. The addition of ¹O₂ to aniline proceeds with the simultaneous proton transfer to the oxygen molecule from the NH₂ group (for the syn-approach of oxygen) or from the aromatic ring (for the anti-approach). For the syn-approach of the ¹O₂ molecule, the HNC₆H₄(H)OOH intermediate is formed, whose decomposition leads to aniline p-hydroperoxide (predominantly) or p-iminoquinone. In the case of the anti-approach, the ¹O₂ molecule is inserted at the C–H bond to form aniline p-hydroperoxide (H₂NC₆H₄OOH). The decomposition of aniline p-hydroperoxide with the formation of p-aminophenol and H₂O₂ molecule proceeds via concerted mechanism.     

Synthesis and structure of bis(1,2-diaminoethane) copper(II) bis(<Emphasis Type="Italic">o</Emphasis>-hydroxybenzoate) monohydrate and <Emphasis Type="Italic">trans</Emphasis>-diaquabis(1,2-diaminoethane)copper(II) bis(<Emphasis Type="Italic">o</Emphasis>-aminobenzoate)

X-ray structural analysis has been performed for two complex compounds: Cu(en)₂(o-HB)₂H₂O (I) (a = 16.873(4) Å, b = 8.713(2) Å, c = 14.803(3) Å, β = 91.15(2)°, V = 2175.8(8) ų, C2/c, Z = 4, R(F) = 0.0263, 1516 reflections with I > 3σ (I)) and [Cu(en)₂(OH₂)₂]²⁺(o-AB^?)₂ (II) (a = 7.488(5) Å, b = 22.122(8) Å, c = 7.856(5) Å, β = 118.77(2)°, V = 1140.7(11) ų, P2₁/n, Z = 2, R(F) = 0.0432, 1684 reflections with I > 3σ(I)) synthesized under identical conditions (en is ethylenediamine, o-HB is o-hydroxybenzoate, and o-AB is o-aminobenzoate). Although the compounds were assumed to have similar structures and the Cu-Lig bond lengths and the cis and trans angles are acceptable for an octahedral structure, the geometric parameters of o-HB suggest that the copper atom has a plane square environment.     

Thermodynamic properties and functions of condensed Bi<Subscript>8</Subscript>O<Subscript>11</Subscript>

The values of ΔH°₂₉₈, S°₂₉₈, H°₂₉₈–H°₀, T, ΔH _fus, and C _p(T), as well as the temperature dependences of the Gibbs energy function, are calculated for Bi₈O₁₁ oxide by proven computational methods.     

Crystal structure of KPb<Subscript>2</Subscript>Cl<Subscript>5</Subscript> and KPb<Subscript>2</Subscript>Br<Subscript>5</Subscript>

The KPb₂Cl₅ and KPb₂Br₅ crystals are monoclinic (P2₁/c) with a microtwinned structure. X-ray analysis of chloride resulted in the parameters a = 8.854(2) Å, b = 7.927(2) Å, c = 12.485(3) Å; β = 90.05(3)°, d_calc = 4.78(1) g/cm³ (STOE STADI4, MoK_α, 2θ_max = 80°), R₁ = 0.0702 for 4094 F ≥ 4 σ(F) reflections. For bromide, a = 9.256(2) Å, b = 8.365(2) Å, c = 13.025(3) Å; β = 90.00(3)°, d_calc = 5.62(1) g/cm³ (Bruker P4, MoK_α, 2θ_max = 70°), R₁ = 0.0692 for 3076 F ≥ 4 (F) reflections.     

Quantum-Chemical Study on Positional Selectivity in the Trimethylsilylation and Sulfonation of Pyrrole and <Emphasis Type="Italic">N</Emphasis>-Alkylpyrroles

Positional selectivity (α:β ratio) of electrophilic substitution in pyrrole, N-methylpyrrole, and N-tert-butylpyrrole was analyzed by ab initio [RHF/6-31G(d), MP2/6-31G(d)//RHF/6-31G(d)] and DFT [B3LYP/6-31G(d)] calculations of some σ-complexes derived from the substrates. The results of calculations with the use as model electrophilic species of trimethylsilyl cation [MP2/6-31G(d)//RHF/6-31G(d) and B3LYP/6-31G(d)] and SO₃ molecule [B3LYP/6-31G(d)] instead of proton are fairly consistent with the experimental data, according to which trimethylsilylation of pyrrole and its N-substituted derivatives with trimethylsilyl trifluoromethanesulfonate, as well as sulfonation with pyridine-sulfur trioxide complex, gives the corresponding β-substituted products.     

Hydration and proton transport in solid solutions based on Ba<Subscript>2</Subscript>CaWO<Subscript>6</Subscript>

Hydrated alkaline-earth metal tungstates Ba₄Ca_{2 + x} W_{2 ? x} O_{12 ? 2x} with perovskite structure were studied by the thermogravimetry, ¹H NMR, IR, and Raman spectroscopy methods. Electrical conductivity and transfer numbers were measured with varying T, \(p_{O_2 } \) and \(p_{H_2 O} \). The solid solutions are capable of reversibly intercalating water and can exhibit high-temperature proton transport. The localization of protons on oxygen results in the appearance of energetically nonequivalent OH groups; a small fraction of protons are present in the form of H₂O and H₃O⁺.     

Systems Li<Subscript>2</Subscript>O(Na<Subscript>2</Subscript>O)-CdO-V<Subscript>2</Subscript>O<Subscript>5</Subscript>: Phase composition and phase diagrams

The subsolidus phase composition of the M₂O-CdO-V₂O₅ systems with M = Li or Na is studied. Double orthovanadates MCdVO₄ and MCd₄(VO₄)₃ form solid solutions of composition Li_{1 ? 2x/3}Cd _x/3CdVO₄ (0 ≤ x ≤ 1, orthorhombic space group Cmcm, modulation at x = 0.6) and Na_{3 ? 2x} Cd_{3 + x} (VO₄)₃ (0 ≤ x ≤ 0.10 and 0.30 ≤ x ≤ 1, orthorhombic space group Cmcm and Pn2₁ a or Pnma, respectively). In the range 0.10 < x < 0.30, the end-members of the solid solutions coexist. Isothermal sections of the systems are mapped.     

Crystal structures of <Emphasis Type="Italic">trans</Emphasis>-[Re<Subscript>6</Subscript>S<Subscript>8</Subscript>(CN)<Subscript>2</Subscript>L<Subscript>4</Subscript>] complexes,L = pyridine or 4-methylpyridine

The structures of three novel octahedral rhenium cluster compounds [Re₆S₈(CN)₂(py)₄]·H₂O (1), [Re₆S₈(CN)₂(4-Mepy)₄] (2), [Re₆S₈(CN)₂(4-Mepy)₄]·4-Mepy (3) (py = pyridine, 4-Mepy = 4-methylpyridine) are determined by X-ray crystallography. Crystal data are: C2/m space group, a = 14.813(1) Å, b = 14.772(1) Å, c = 9.2122(6) Å, β = 119.085(2)°, V = 1761.7(2) ų, d _x = 3.318 g/cm³, R = 0.0585 (1); I4₁/amd space group, a = 16.0018(3) Å, c = 14.7186(5) Å, V = 3768.81(16) ų, d _x = 3.169 g/cm³, R = 0.0489 (2); P2₁/c space group, a = 9.0452(4) Å, b = 15.8065(7) Å, c = 15.2951(6) Å, β = 103.700(2)°, V = 2124.57(16) ų, d _x = 2.957 g/cm³, R = 0.0245 (3). Molecular cluster complexes interact via π-π stacking affording 3D frameworks in 1 and 2 and chains in 3.     

Analysis of Novel Antioxidant Sesquarterpenes (C<Subscript>35</Subscript> Terpenes) Produced in Recombinant <Emphasis Type="Italic">Corynebacterium glutamicum</Emphasis>

Novel synthetic isoprenoids have been synthesized in engineered microbial hosts by evolving terpene synthase or expressing heterologous terpene synthases. Recently, the native operon, crtN_aN_cM derived from Planococcus sp. PAMC 21323, has isolated for potential industrial applications of C₃₅ carotenoids. For the first time, novel C₃₅ carotenoids (sesquarterpene) were synthesized in Corynebacterium glutamicum expressing the crtN_aN_cM genes. The recombinant strains accumulate various sesquarterpene including 4-apolycopene (red color), 4-aponeurosporene (yellow color), and no pigmentation, depending on the expression of the genetic elements of the crtN_aN_cM genes. Subsequently, the carotenoid extract from the cells harboring pCES-H36-CrtN_aN_cM was analyzed, resulting in significantly higher antioxidant activity than those of other strains harboring pCES-H36-CrtN_cM and pCES-H36-CrtN_aN_c, respectively. This study will promote further engineering of C. glutamicum to increase sesquarterpene productions.     

Steric structure of alkyl 2-aryl(hetaryl)hydrazono-3-fluoroalkyl-3-oxopropionates

Steric structure of fluorinated 2-arylhydrazono-3-oxo esters was studied by ¹H, ¹⁹F, and ¹³C NMR spectroscopy and X-ray analysis. It was found that these compounds in the crystalline state and in solutions in acetone-d ₆, DMSO-d ₆, and CDCl₃ exist as Z isomers with the ester fragment involved in intramolecular hydrogen bond with the hydrazone NH proton. Exceptions are alkyl 2-arylhydrazono-4,4-difluoro-3-oxobutanoates which exist in acetone-d ₆ as mixtures of Z and E isomers, the former prevailing. Unlike fluorinated analogs, ethyl 2-(4-methylphenyl)hydrazono-3-oxobutanoate in crystal has the structure of E isomer in which intramolecular hydrogen bond is formed between the NH proton and acetyl carbonyl group. The same compound in acetone-d ₆, DMSO-d ₆, and CDCl₃ gives rise to a mixture of Z and E isomers, the latter prevailing.     

Synthesis and crystal structure of (<Emphasis Type="Italic">o</Emphasis>-Diaminobenzene)<Subscript>2</Subscript> Zn(OAc)<Subscript>2</Subscript>

The treatment of o-diaminobenzene with Zn ( OAc )₂ · 2H₂O in alcohol results in the formation of mononuclear bis(o-diaminobenzene)diacetate Zinc, Zn[C₈H₁₁N₂O₂]₂. Its structure was determined by X-ray diffraction analysis. The complex is also characterized by elemental analysis, ¹H NMR and IR. The crystal is monoclinic space group C2, parameters: a = 16.297(5), b = 4.775(3), c = 11.664(5) Å, β = 97.646(5)°, λ = 1.54184 Å, V = 899.6(7) ų, Z = 2, ρ _c = 1.476 g/cm³, M _r = 399.75, F(000) = 416.0, R ₁ = 0.0594, wR ₂ = 0.1439 for 995 observed reflections with I > 2σ(I).     

Structure and properties of solid solutions based on bismuth niobate Bi<Subscript>3</Subscript>NbO<Subscript>7</Subscript>

Solid solutions Bi₃Nb_1–yW_yO_{7 ± δ}, Bi₃Nb_1–yV_yO_{7 ± δ}, Bi₃Nb_1–yFe_yO_{7 ± δ} (y = 0.1–0.5; Δy = 0.1), and Bi_3–xY_xNb_1–yW_yO_{7 ± δ} (x = 0.05, 0.1; y = 0–0.3; Δy = 0.1) have been studied. The homogeneity ranges of the solid solutions and crystal-chemical parameters have been determined by means of X-ray powder diffraction. The electrical conductivity of sintered samples has been studied by impedance spectroscopy. The joint introduction of yttrium and tungsten into the niobium sublattice does not lead to an increase in the conductivity of solid solutions, and the change of the dopant type has no noticeable effect on this conductivity.