NMR,IR and DFT studies of phenylplatinum complexes with O-monodentate coordinated silsesquioxanate and auxiliary phosphine ligands

The molecular structure and spectroscopic properties of a series of phenylplatinum complexes containing silsesquioxanate and phosphine ligands with general formula trans-[Pt{O₁₀Si₇(R)₇(OH)₂}(Ph)(L)₂] (1: R = cyclo-C₅H₉, L = PEt₃; 2: R = iso-C₄H₉, L = PEt₃; 3: R = CH₃, L = PEt₃; 4: R = cyclo-C₅H₉, L = PMe₃; 5: R = cyclo-C₅H₉, L = PMe₂Ph; 6: R = cyclo-C₅H₉, L = PPh₂Me; 7: R = cyclo-C₅H₉, L = PPh₃) have been investigated by DFT/OPW91/6-31G(d) calculations, ¹H, ¹³C, ²⁹Si and ³¹P NMR and IR spectroscopy. DFT molecular modeling based on available X-ray and NMR data for complexes 1 and 2 allowed deriving structure-NMR spectra correlations. It was found that the alkyl substituents (R) attached to Si atoms, cyclo-C₅H₉, iso-C₄H₉ and CH₃, slightly influence the geometry and multinuclear NMR parameters of the complexes in the series studied. The molecular structures of the Pt(II) complexes with R = cyclo-C₅H₉ (4–7) were predicted by DFT calculations of their simplified models with R = CH₃ (4′?7′). The geometry optimizations of 4′?7′ showed square-planar configuration of Pt(II) center bonded to two trans phosphine ligands, a phenyl group and an O-monocoordinated silsesquioxanate. The structures 4′?6′ are stabilized by two intramolecular hydrogen bonds similar to 1 and 2. A fast conformer exchange process A?B and switching of H-bonds in solution of 1–6 were suggested based on (i) the calculated conformer energies and small barrier of the process, and (ii) the observed single ¹H NMR signal at low magnetic field. The stability of the Pt(II) complexes depends on the nature of the phosphine ligands and decreases in the order PMe₂Ph > PMe₃ > PPh₂Me > PEt₃ > PPh₃. The PPh₃ ligands attached to Pt(II) in 7 cause the largest geometry changes and a new set of weaker hydrogen bonds. The comparison of the calculated NMR and IR parameters with the experimental spectroscopic data reveals good coincidence and thus confirmed the suggested molecular structures.     

DFT theoretical studies of alkali metal acetylenic thiolates

It follows from DFT calculations of acetylenic thiolates and their structural isomers—thioketenes and thiirenes that only the acetylenic type is stable. Most of the negative charge is concentrated on the sulfur atom. The influence of the cation (Li, Na, K) and the acetylenic substituent on the electronic structure and geometry of the thiolates is investigated. DFT calculations of IR and ¹³C NMR spectra of phenylethynethiolate potassium are in agreement with experimental data.     

Water trapped in dibenzo-18-crown-6: theoretical and spectroscopic (IR, Raman) studies

Experimental (IR and Raman) and theoretical (Kohn-Sham calculations) methods are used in a combined analysis aimed at refining the available structural data concerning the molecular guests in channels formed by stacked dibenzo-18-crown-6 (DB18C6) crown ether. The calculations are performed for a simplified model comprising isolated DB18C6 unit and its complexes with either H2O or H3O+ guests, which are the simplest model ingredients of a one-dimensional diluted acid chain, to get structural and energetic data concerning the formation of the complex and to assign the characteristic spectroscopic bands. The oxygen centers in the previously reported crystallographic structure are assigned to either H2O or protonated species.     

UV and IR spectroscopic studies of cold alkali metal ion-crown ether complexes in the gas phase

We report UV photodissociation (UVPD) and IR-UV double-resonance spectra of dibenzo-18-crown-6 (DB18C6) complexes with alkali metal ions (Li(+), Na(+), K(+), Rb(+), and Cs(+)) in a cold, 22-pole ion trap. All the complexes show a number of vibronically resolved UV bands in the 36,000-38,000 cm(-1) region. The Li(+) and Na(+) complexes each exhibit two stable conformations in the cold ion trap (as verified by IR-UV double resonance), whereas the K(+), Rb(+), and Cs(+) complexes exist in a single conformation. We analyze the structure of the conformers with the aid of density functional theory (DFT) calculations. In the Li(+) and Na(+) complexes, DB18C6 distorts the ether ring to fit the cavity size to the small diameter of Li(+) and Na(+). In the complexes with K(+), Rb(+), and Cs(+), DB18C6 adopts a boat-type (C(2v)) open conformation. The K(+) ion is captured in the cavity of the open conformer thanks to the optimum matching between the cavity size and the ion diameter. The Rb(+) and Cs(+) ions sit on top of the ether ring because they are too large to enter the cavity of the open conformer. According to time-dependent DFT calculations, complexes that are highly distorted to hold metal ions open the ether ring upon S(1)-S(0) excitation, and this is confirmed by extensive low-frequency progressions in the UVPD spectra.     

Infrared and Raman spectroscopic and theoretical studies of nonaaqua complexes of trivalent rare earth metal ions

Infrared (IR), far-infrared (far-IR) and Raman spectra have been recorded of the hydrated lanthanide(III) trifluoromethanesulfonates, [Ln(OH2)9](CF3SO3)3, (Ln=La, Pr, Nd, Sm, Gd, Tb, Dy, Ho, Er, Tm, Yb and Lu), and also for the deuterated [La(OD2)9](CF3SO3)3 compound. This has enabled complete assignments of all seven metal-oxygen stretching modes for the first time. Force constant calculations have been performed for an LnO9(3+) moiety, with a tricapped trigonal prismatic oxygen atom arrangement in D3h point group symmetry. The lanthanide contraction in reflected in continuously increasing trends for the averaged LnO stretching frequencies and force constants with increasing inverse of ionic radii. The stretching force constants increased from 0.81 to 1.16 Ncm-1 for the LnO6 prism in the series from La to Lu, while those for the capping LnO3 bonds increased from 0.49 to 0.65 Ncm-1. The LnO stretching force constants showed a smooth correlation with the LnO bond distances to the prism oxygen atoms, while the correlation to the LnO capping oxygen atoms has a different shape, reflecting the increased ligand-ligand repulsion with decreasing lanthanide ion size.     

Joint spectroscopic and theoretical investigations of transition metal complexes involving non-innocent ligands

A series of transition metal complexes involving non-innocent o-dithiolene and o-phenylenediamine ligands has been characterized in detail by various spectroscopic methods like magnetic circular dichroism (MCD), absorption (abs), resonance Raman (rR), electron paramagnetic resonance (EPR), and sulfur K-edge X-ray absorption spectroscopies. A computational model for the electronic structure of the complexes is then proposed based on the density functional theory (DFT) or ab-initio methods, which can successfully account for the observed trends in the experimental spectra (MCD, rR, and abs) of the complexes. Based on these studies, the innocent vs non-innocent nature of the ligands in a given transition metal complex is found to be dependent on the position of the central metal ion in the periodic table, its effective nuclear charge in interplay with relativistic effects.     

Spectroscopic,structure and DFT studies of palladium(II) complexes with pyridine-type ligands

Five palladium(II) complexes with pyridine derivative ligands have been synthesized. The molecular structures of the complexes were determined by X-ray crystallography, and their spectroscopic properties were studied. Based on the crystal structures, computational investigations were carried out in order to determine the electronic structures of the complexes. The electronic spectra were calculated with the use of time-dependent DFT methods, and the electronic spectra of the transitions were correlated with the molecular orbitals of the complexes. The emission properties of the complexes have been examined.     

Coordination stability between metal/ligands interaction by modern spectroscopic studies: IR, electronic, EPR and cyclic voltammetry of cobalt(II) complexes with organic skeleton containing cyclic ligands

A comparative investigation of the interaction of two pyrrole-substituted, mixed oxygen and nitrogen donor, macrocycles ligands have been designed and their coordination interaction with cobalt(II) is studied. Cobalt(II) salts combine with a tetradentate and hexadentate macrocyclic nitrogen/oxygen donor ligands and formed novel cobalt(II) complexes which are characterized by elemental analysis, molar conductance, magnetic moments, mass, (1)H NMR, IR, electronic and EPR spectral studies. At the room temperature magnetic moment for cobalt(II) complexes lie in the range 4.70-5.01BM, which is higher than the spin-only value. All the complexes are high-spin type and have three unpaired electrons. Therefore, the electronic confutation and the splitting of the orbital will be t(2g)(5)eg(2). The electrochemical behaviour of the cobalt(II) complexes, the Co(III)/Co(II) couple are observed. Their positive potential indicates that metal in lower oxidation state is strongly bound to these ligands. The difference between the potential of the anodic peak and cathodic peak remains constant in all complexes. Also, the ratio between the cathodic peak current and square root of the scan rate is practically constant for the studied complexes.     

Spectroscopic,structure, and DFT studies of cationic palladium(II) complexes with imidazole derivative ligands

Two palladium(II) complexes with imidazole derivative ligands have been synthesized. The molecular structures of the complexes were determined by X-ray crystallography and their spectroscopic properties were studied. Based on the crystal structures, computational investigations were carried out to determine the electronic structures of the complexes. The electronic spectra were calculated with use of time-dependent DFT method, and the transitions were correlated with the molecular orbitals of the complexes. The emission of the complex with 1-methylimidazole was examined.     

X-ray diffraction, DFT theoretical, and IR polarized spectroscopic studies of the crystal-like E-mesophase of 4′-hexyloxy-isothiocyanatotolane (6OTOLT)

The dynamics of 6OTOLT molecules was analyzed based on IR absorption spectra and DFT calculations. Of particular interest was the mode ascribed to the ν_as(NCS) vibrations, the transition dipole moment of which is directed along the long axes of the molecules. Polarized IR spectra in the region of this mode allowed a characterization of the ordering of molecules in the analyzed phases. In a case of the smectic E phase, a random distribution of molecules aligned laterally in two-dimensional space between KRS-5 windows was found. The crystals of 6OTOLT were successfully grown and are characterized by an interesting Pc space group. The molecules are parallely arranged in layers and cross the adjoining ones underneath at an angle of 86.04°. The distance between the ring planes is 3.48 Å. The packing of molecules indicates a tendency to maintain short contacts between NCS groups and alkyl chains. The crystals grown do not correspond to the ordering of the smectic E phase and thus to the solid state obtained after cooling the smectic phase. Calculations of the interaction energy for three possible arrangements of dimeric species show a predominance of the core-to-core units. It was also shown that in this case an increase in ν_as(NCS) frequency should be expected, in good agreement with experimental data.     

X-ray diffraction,spectroscopic (IR,Raman) and DSC studies of bis(betainium) p-toluenesulfonate monohydrate crystal

Bis(betainium) p-toluenesulfonate monohydrate (abbreviated as BBTSH) was studied at various temperatures by X-ray diffraction, differential scanning calorimetry and vibrational spectroscopy methods. DSC curves of BBTSH show a peak at about 349 K which corresponds to water escape from the crystal, and reveal the “cold crystallization” phenomenon. BBTSH crystallizes in the P2₁/c space group of monoclinic system. After heating above 349 K the compound dehydrates, the crystal system changes to triclinic, the monocrystalline samples become non-merohedral twins. The BBTSH crystal comprises p-toluenesulfonic anions, monoprotonated betaine dimers and water molecules. Three kinds of hydrogen bonds are present in the crystal: strong, asymmetric and almost linear OH⋯O hydrogen bond (R(O⋯O) = 2.463(2) Å), weak O_wH⋯O hydrogen bonds (R(O_w⋯O) = 2.820(2) − 2.822(2) Å) and weak CH⋯O hydrogen bonds (R(C⋯O) = 3.295(2) − 3.416(2) Å). The ν_aOHO vibration of the strongest hydrogen bond in the crystal gives rise to an intense broad absorption with numbers of transmission windows in the low wavenumber region of the infrared spectra. Coupling between νCO stretching vibrations of two COO groups of the betaine dimer was detected. The process corresponding to the loss of water is accompanied by the breakage of strong OH⋯O hydrogen bonds in betaine dimers and rearrangement inside half of the betaine dimers. This rearrangement results in formation of the new betaine dimers with OH∙∙∙O hydrogen bond of similar strength as corresponding bond in the hydrated form (BBTSH).     

Structural,spectroscopic, molecular docking,thermal and DFT studies on metal complexes of bidentate orthoquinone ligand

4‐Triphenylmethyl‐1,2‐benzoquinone (TPMBQ) reacted with some metal ions and the structure of the new compounds had been identified. The metal to ligand ratio was 1:2 which was revealed by elemental analysis. The complexes were found to have octahedral geometry and their thermal stability was studied using thermogravimetric analysis technique. The molar conductance measurements revealed the electrolytic nature of the synthesized chelates. The IR spectra concluded the bidentate nature of the TPMBQ ligand while the ¹H NMR revealed the presence of water molecules. The XRD spectra of Mn (II) and Fe (III) complexes concluded their crystalline structure while Co (II) and Cu (II) chelates refer to amorphous structures. The geometries of the TPMBQ ligand were optimized using Gaussian 09 W; density functional theory B3LYP method. (DFT)/basis set 6–311++G (d, p). HOMO and LUMO energy values for chelates, chemical hardness and electro‐negativity had been calculated. The ligand and its metal complexes had been examined against different kinds of bacteria such as Proteus vulgaris, Escherichia coli, Staphylococcus aurous and Bacillus subtitles to examine their antimicrobial activity. Molecular docking using Auto Dock tools were utilized.     

Thermal,spectroscopic, X-ray and theoretical studies of metal complexes (sodium,manganese, copper,nickel, cobalt and zinc) with pyrimidine-5-carboxylic and pyrimidine-2-carboxylic acids

Journal of Thermal Analysis and Calorimetry - The new 3d metal complexes of pyrimidine-2-carboxylic (2PCA) and pyrimidine-5-carboxylic (5PCA) acids were synthesized and characterized using thermal...     

A resonance Raman,surface-enhanced resonance Raman,IR, and ab initio vibrational spectroscopic study of nickel(II) tetraazaannulene complexes

The IR and resonance Raman spectra of the nickel(II) complexes of dibenzo[b,i][1,4,8,11]tetraaza[14]annulene (TAA) and 5,7,12,14-tetramethyldibenzo[b,i][1,4,8,11]tetraaza[14]annulene (TMTAA) have been measured and compared with ab initio calculations of the vibrational wavenumbers at the B3-LYP level using the LanL2DZ basis set. An excellent fit is found between the experimental and calculated data, enabling precise vibrational assignments to be made. Surface-enhanced resonance Raman spectra were obtained following adsorption on Ag electrodes, with potentials in the range -0.1 to -1.1 V vs Ag/AgCl. There is evidence for contributions from both the electromagnetic and charge transfer (CT) surface enhancement mechanisms. The data indicate that variations in band intensities with electrode potential can be interpreted in terms of the CT mechanism.     

Experimental (FT-IR, FT-Raman, H, C NMR) and theoretical study of alkali metal 2-aminonicotinates

The influence of lithium, sodium, potassium, rubidium and cesium on the electronic system of 2-aminonicotinic acid (2-ANA) was studied by the methods of molecular spectroscopy. The vibrational (FT-IR, FT-Raman) and NMR (¹H and ¹³C) spectra of 2-aminonicotinic acid and its alkali metal salts were recorded. Characteristic shifts and changes in intensities of bands along the metal series were observed. The changes of chemical shifts of protons (¹H NMR) and carbons (¹³C NMR) in the series of studied alkali metal 2-aminonicotinates (2-AN) were observed too.Optimized geometrical structures of the studied compounds were calculated by the B3LYP method using the 6-311++G** basis set. Aromaticity indices, atomic charges, dipole moments and energies were also calculated. The theoretical chemical shifts in ¹H and ¹³C NMR spectra and theoretical wavenumbers and intensities of IR and Raman spectra were determined. The calculated parameters were compared to the experimental characteristics of the studied compounds.     

Raman spectral study of metal-cytosine complexes: a density functional theoretical (DFT) approach

The fluctuation of surface-enhanced Raman scattering (SERS) spectra has been an obstacle to the analysis of the adsorbate on the metal surface. In this paper, we aim at using the density functional theory (DFT) to study the fluctuant Raman spectra of the cytosine molecule which interacts with a coinage metal atom or cation via N1 and N3 sites. The results show that the adsorption site strongly influences the Raman spectral property of cytosine molecule, especially the relative intensity of some bands. In addition, the SERS spectra of cytosine which is adsorbed on the gold, silver, and copper electrodes are measured, and the possible orientation and adsorption site of the cytosine molecule adsorbed on metal electrodes surface are proposed with the help of DFT simulations.     

Novel complexes of tris(aminomethyl)phosphanes with platinum(II): Structural, spectroscopic, DFT and biological activity studies

Two new platinum(II) complexes with tris(aminomethyl)phosphanes: [trans-PtCl₂{P(CH₂N(CH₂CH₂)₂NCH₃)₃}₂] (1Pt) and [trans-PtCl₂{P(CH₂N(CH₂CH₂)₂O)₃}₂] (2Pt) were prepared and characterized with NMR and UV-Vis spectroscopies. Their structures were investigated by X-ray crystallography and DFT methods. TDDFT calculations were employed to interpret the electronic spectra of the complexes. Obtained results are not unequivocal, however population analysis indicate, that the character of HOMO and HOMO−1 orbitals depend strongly on the electron donoring properties of the phosphane ligand. Biological activity of 2Pt complex, which is more stable and more soluble in polar solvents than 1Pt, was examined in vitro on the Vero cell line (IC₅₀ = 12.5 μM). At higher concentrations it induces apoptosis, probably due to changes of the cell cytoskeleton. Luminescence quenching studies and CD spectroscopy of interactions of 2Pt with HSA and BSA indicate that these albumins bind the complex slightly - without altering their tertiary structures, however HSA interacts with 2Pt noticeably stronger than BSA. It was also found that 2Pt does not cleave supercoiled pUC18 plasmid.     

Synthesis and spectroscopic studies of dinuclear copper(II) complexes with new pendant-armed macrocyclic ligands

Three dinuclear Cu^II perchlorate complexes of macrocyclic ligands derived from the condensation of sodium 4-X-2,6-diformylphenolate (X=Me, Cl or Bu^t) with 1,5-diamino-3-(8-methylquinolyl)azapentane were prepared by in situ transmetallation with Cu(ClO₄)₂ and characterized by physicochemical, spectroscopic and electrochemical methods.     

The pressure tunning Raman and IR spectral studies on the multinuclear metal carbyne complexes

The Raman and infrared (IR) spectra of four tungsten metal carbyne complexes I, II, IV and V [Cl(CO)2(L)W[triple bond]CC6H4[triple bond](C[triple bond]CC6H4)n[triple bond]N[triple bond]C[triple bond]]2M (L = TMEDA, n = 0, M = PdI2 or ReCl(CO)3; L = DPPE, n = 1, M = PdI2 or ReCl(CO)3) were studied at high external pressure. Their pressure-induced phase transitions were observed near 20kbar (complexes I), 15 kbar (complexes II), 25 kbar (complex IV) and 30 kbar (complex V). The pressure-induced phase transition likely is first order in complex I and the pressure-induced phase transitions of complexes II, IV and V are mostly second order. The pressure sensitivities d nu/dp of nu(W[triple bond]C) are high in the low-pressure phase area and very low in the high-pressure phase area due to the pressure strengthening pi back-bonding from metal W to pi* orbital of C[triple bond]O in fragment Cl(CO)2(L)W[triple bond]C. The pressure strengthening metal pi back-bonding from metal Re or Pd to pi* orbital of C[triple bond]O or C[triple bond]N also happened to both of central metal centers of NCPd(I2)CN in complex I and NCReCl(CO)3CN in complex II.