DFT,FT‐Raman,FT‐IR and NMR studies of 2‐fluorophenylboronic acid

The experimental and theoretical vibrational spectra of 2‐fluorophenylboronic acid (2fpba) were studied. The Fourier transform Raman and Fourier transform infrared spectra of the 2fpba molecule were recorded in the solid phase. The structural and spectroscopic analysis of the molecule was carried out by using Hartree‐Fock and density functional harmonic calculations. For the title molecule, only one form was found to be the most stable structure, by using B3LYP level with the 6‐31++G(d,p) basis set. Selected experimental bands were assigned and characterized on the basis of the scaled theoretical wavenumbers by their total energy distribution (TED). The ¹H and ¹³C nuclear magnetic resonance (NMR) chemical shifts of the 2fpba molecule were calculated using the Gauge‐Invariant‐ atomic orbital (GIAO) method in DMSO solution using IEF‐PCM model and compared with the experimental data. Finally, geometric parameters, vibrational wavenumbers and chemical shifts were compared with available experimental data of the molecule. Copyright © 2009 John Wiley & Sons, Ltd.     

Density functional and experimental studies on the FT‐IR and FT‐Raman spectra and structure of benzoic acid and 3,5‐dichloro salicylic acid

FT‐IR and FT‐Raman spectra of benzoic acid (BA) and 3,5‐dichloro salicylic acid (SA) have been recorded in the regions of 4000–400 and 4000–50 cm⁻¹ respectively. The spectra were interpreted with the aid of normal coordinate analysis following the full structure optimizations and force field calculations based on density functional theory (DFT) using standard B3LYP6‐31G** method and basis set combinations. The DFT force field transformed to natural internal coordinates was corrected by a well‐established set of scale factors that were found to be transferable to the title compounds. The infrared and Raman spectra were also predicted from the calculated intensities. Comparison of the simulated spectra with the experimental spectra provides important information about the ability of the computational method to describe the vibrational modes. Copyright © 2008 John Wiley & Sons, Ltd.     

Betulin and its natural resource as potential anticancer drug candidate seen by FT‐Raman and FT‐IR spectroscopy

The Fourier transform Raman and IR spectra of betulin (lup‐20(29)‐ene‐3β,28‐diol) crystalline powder were recorded and analyzed. The vibrational wavenumbers and the corresponding vibrational assignments were theoretically studied using the Gaussian 03 package. The calculated vibrational wavenumbers with the B3LYP density functionals are generally consistent with the observed spectra. A complete vibrational characterization of betulin modes has been proposed here for the first time. Based on the vibrational analysis, two direct applications of the results have been described. It was shown that the outer bark of Betula Pendula Roth (the birch tree) contains betulin as a major component along with minor amounts of betulinic acid (BA), lupeol and other pentacyclic triterpenes derivatives. Since the major disadvantage of betulin is its low solubility, giving rise to serious problems in making pharmaceutical formulations, several guest–host type of complexes of betulin–cyclodextrins have been prepared and analyzed using FT‐Raman spectroscopy. Based on the vibrational analysis, it was concluded that the OH and CH₂OH functional groups are free from chemical interactions with the cyclodextrin cavity. Copyright © 2010 John Wiley & Sons, Ltd.     

FT‐Raman,FT‐IR spectra and DFT calculations on monomeric and dimeric structures of 5‐fluoro‐ and 5‐chloro‐salicylic acid

The experimental and theoretical study on the structures and vibrations of 5‐fluoro‐salicylic acid and 5‐chloro‐salicylic acid (5‐FSA and 5‐ClSA, C₇H₅FO₃ and C₇H₅ClO₃) is presented. The Fourier transform infrared spectra (4000–400 cm⁻¹) and the Fourier transform Raman spectra (4000–50 cm⁻¹) of the title molecules in the solid phase were recorded. The molecular structures, vibrational wavenumbers, infrared intensities, Raman intensities and Raman scattering activities were calculated for a pair of molecules linked by the intermolecular O H···O hydrogen bond. The geometrical parameters and energies of 5‐FSA and 5ClSA were obtained for all eight conformers/isomers from density functional theory (DFT) (B3LYP) with 6‐311++G(d,p) basis set calculations. The computational results identified the most stable conformer of 5‐FSA and 5‐ClSA as the C1 form. The complete assignments were performed on the basis of the total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method. The spectroscopic and theoretical results were compared with the corresponding properties for 5‐FSA and 5‐ClSA monomers and dimer of C1 conformer. The optimized bond lengths, bond angles and calculated wavenumbers showed the best agreement with the experimental results. Copyright © 2010 John Wiley & Sons, Ltd.     

FT‐Raman and FT‐IR spectral and quantum chemical studies on some flavonoid derivatives: Baicalein and Naringenin

In this study, the experimental and theoretical results on the molecular structures of some flavonoid derivatives (Baicalein and Naringenin) are presented. The FT‐IR and FT‐Raman spectra of the compounds have been recorded together for the first time between 4000–400 cm⁻¹ and 3500–5 cm⁻¹ regions, respectively. The molecular geometry and vibrational wavenumbers of the compounds have been also calculated in their ground states by using ab initio HF and DFT/B3LYP functional with 6‐31G(d,p) basis set used in calculations. The calculations were utilized to the C₁ symmetries of the molecules. All calculations were performed with Gaussian 98 software. The obtained vibrational wavenumbers and optimized geometric parameters were seen to be in good agreement with the experimental data. Scale factors have been used in order to compare how the calculated and experimental data are in agreement. Theoretical infrared intensities were also reported. Copyright © 2008 John Wiley & Sons, Ltd.     

In situ monitoring of solid‐state transition of p‐aminobenzoic acid polymorphs using Raman spectroscopy

The purpose of this study is to investigate the mechanism of solid‐state polymorphic transition of p‐aminobenzoic acid (PABA) using in situ Raman spectroscopy measurement. The polymorphic transition experiments were conducted on a micro quartz vessel mounted on a microscope, hot and cold stage, under isothermal conditions. The temperature was precisely controlled by a standalone temperature controller equipped with liquid nitrogen cooling system. The Raman spectroscopy probe was positioned on the surface of the solid sample in the micro vessel. The polymorphic transition progression was in situ monitored and recorded by Raman spectroscopy. Based on the polymorphic transition rate resulted from the quantitative analysis of Raman spectra, the mechanism of solid‐state polymorphic transition of PABA was examined by various empirical kinetic models. An Arrhenius analysis was also performed to calculate activation energies from 134.7 kJ mol⁻¹ to 137.7 kJ mol⁻¹ for the transition. The results demonstrated that in situ Raman spectroscopy is a valuable and accurate technique to probe polymorphic transition process. Copyright © 2009 John Wiley & Sons, Ltd.     

Vibrational characterization of L‐valine phosphonate dipeptides: FT‐IR,FT‐RS,and SERS spectroscopy studies and DFT calculations

Four L ‐valine (L ‐Val) phosphonate dipeptides that are potent inhibitors of zinc metalloproteases, namely, L ‐Val‐C(Me)₂‐PO₃H₂ (V1), L ‐Val‐CH(iP)‐PO₃H₂ (V2), L ‐Val‐CH(iB)‐PO₃H₂ (V3), and L ‐Val‐C(Me)(iP)‐PO₃H₂ (V4), are studied by Fourier‐transform infrared (FT‐IR) spectroscopy, Fourier‐transform Raman spectroscopy (FT‐RS), and surface‐enhanced Raman scattering (SERS). The band assignment (wavenumbers and intensities) is made based on (B3LYP/6‐311 + + G**) calculations. Comparison of theoretical FT‐IR and FT‐RS spectra with those of SERS allows to obtain information on the orientation of these dipeptides as well as specific‐competitive interactions of their functionalities with the silver substrate. More specifically, V1 and V4 appear to interact with the silver substrate mainly via a  C_sgCH₃ moiety localized at the  N_amideC_sg(CH₃)P molecular fragment. In addition, the  POH and isopropyl units of V4 assist in the adsorption process of this molecule. In contrast, the  C_αNH₂ and  PO₃H⁻ groups of V2 and V3 interact with the silver nanoparticles, whereas their isopropyl and isobutyl fragments seem to be repelled by the silver substrate (except for the  CH₂  of V3), similar to the  C_β(CH₃)₂ fragment of L ‐Val for all L ‐Val phosphonate dipeptides investigated in this work. The adsorption mechanism of these molecules onto the colloidal silver surface is also affected by amide bond behavior. Copyright © 2010 John Wiley & Sons, Ltd.     

Molecular structure and vibrational spectra of 3 (or 4 or 6)‐methyl‐5‐nitro‐2‐pyridinethiones: FT‐IR,FT‐Raman and DFT quantum chemical calculations

IR and Raman spectra (RS) of polycrystalline 3‐(or 4 or 6)‐methyl‐5‐nitro‐2‐pyridinethione have been measured and analyzed by means of density functional theory (DFT) quantum chemical calculations. The B3LYP/6‐311G(2d,2p) approach has been applied for both the thiol and thione tautomers due to the possibility of the formation of these two thiole forms. Molecular structures of these compounds have been optimized starting from different molecular geometries of the thiol group and thione group. Two conformations of the 2‐mercaptopyridine, trans and cis, have been taken into account. It was shown that the studied compounds appear in the solid state in the thione form. The effect of the hydrogen‐bond formation in the studied compounds has been considered. Copyright © 2008 John Wiley & Sons, Ltd.     

Raman,FT‐IR,and DFT studies of 3,5‐pyrazoledicarboxylic acid and its Ce(III) and Nd(III) complexes

3,5‐Pyrazoledicarboxylic acid was used as a ligand for the synthesis of its Ce(III) and Nd(III) complexes. The complexes of Ce(III) and Nd(III) with 3,5‐pyrazoledicarboxylic acid were synthesized and their compositions were determined by elemental analysis. Vibrational study in the solid state of 3,5‐pyrazoledicarboxylic acid and its new Ce(III) and Nd(III) complexes was performed by IR and Raman spectroscopy. The changes observed between the IR and Raman spectra of the ligand and of the complexes allowed us to establish the coordination mode of the metal in both complexes. The comparative vibrational analysis of the free ligand and its lanthanide(III) complexes gave evidence that 3,5‐pyrazoledicarboxylic acid binds Ln(III) through the deprotonated carboxylic oxygens. The density functional theory (DFT) calculated geometries, harmonic vibrational modes and Raman scattering activities of the ligand were in good agreement with the experimental data, and a complete vibrational assignment is being proposed. The experimental IR and Raman bands of the ligand were assigned to normal modes on the basis of DFT calculations. The effect of the intramolecular hydrogen bonds in the ligand on vibrational mode positions is also discussed. The characteristic IR and Raman bands of 3,5‐pyrazoledicarboxylic acid and its lanthanide complexes were specified and discussed. Copyright © 2006 John Wiley & Sons, Ltd.     

Spectroscopic (FT‐IR,FT‐Raman,UV, 1H,and 13C NMR) and theoretical studies of m‐anisic acid and lithium,sodium, potassium,rubidium, and caesium m‐anisates

In order to understand the nature of the interactions of biologically important ligands, it is necessary to carry out the physico‐chemical studies of these compounds with their biological targets (e.g., receptors in the cell or important cell components). Results of this study make it possible to predict some properties of a molecule, such as its reactivity, durability of complex compounds, and kinship to enzymes. In this paper the effect of alkali metal cations (Li, Na, K, Rb, and Cs) on the electronic structure of m‐methoxybenzoic acid (m‐anisic acid) was studied. The experimental IR (in solid state and solution), Raman, UV (in solid state and solution), ¹H, and ¹³C NMR spectra of m‐methoxybenzoic acid, and its salts were registered, assigned, and analyzed. Some of the obtained results were compared with published data for o‐anisic acid and o‐anisates. The structures of anisic acid and Li, Na, and K m‐anisates were optimized at the B3LYP/6‐311++G** level. The IR, ¹H, and ¹³C NMR spectra and NPA, ChelpG, and MK atomic charges were calculated. The change of metal along with the series: Li → Na → K → Rb → Cs caused: (1) the change in the electronic charge distribution in anisate anion that is seen via the occurrence of the systematic shifts of several bands in the experimental and theoretical IR and Raman spectra of anisates; (2) systematic ¹H and ¹³C NMR chemical shifts; (3) hypsochromic shifts in UV spectra of salts as compared to ligands. Copyright © 2009 John Wiley & Sons, Ltd.     

IR,Raman and SERS spectra of 3,5‐dinitrosalicylic acid

IR, Raman and surface enhanced Raman scattering (SERS) spectra of 3,5‐dinitrosalicylic acid (DNSA) were recorded and analysed. The vibrational wavenumbers were computed by the ab initio method using RHF/6–21G* basis and they were found to be in good agreement with the experimental values. The effect of the concentration dependence on the SERS intensity of the molecule was studied. The molecular plane assumes a tilted orientation with respect to the silver surface. Copyright © 2006 John Wiley & Sons, Ltd.     

IR,Raman and SERS spectra of 5‐sulphosalicylic acid dihydrate

IR, Raman and surface‐enhanced Raman scattering (SERS) spectra of 5‐sulphosalicylic acid were recorded and analysed. The vibrational wavenumbers were computed by density functional theoretical (DFT) method using B3LYP/6–31G* basis. The bands due to the stretching modes CO, C S and SO₂ are intense in the SERS spectrum. The C H stretching mode also appears in the SERS spectrum. The molecule is found to adsorb through both the carboxyl and sulphonyl groups. A possible tilted orientation of the molecule is suggested. Copyright © 2006 John Wiley & Sons, Ltd.     

IR/Raman spectroscopy and DFT calculations of cyclic di‐amino acid peptides. Part III: comparison of solid state and solution structures of cyclo(L‐Ser‐L‐Ser)

B3‐LYP/cc‐pVDZ calculations of the gas‐phase structure and vibrational spectra of the isolated molecule cyclo(L ‐Ser‐L ‐Ser), a cyclic di‐amino acid peptide (CDAP), were carried out by assuming C₂ symmetry. It is predicted that the minimum‐energy structure is a boat conformation for the diketopiperazine (DKP) ring with both L ‐seryl side chains being folded slightly above the ring. An additional structure of higher energy (15.16 kJ mol⁻¹) has been calculated for a DKP ring with a planar geometry, although in this case two fundamental vibrations have been calculated with imaginary wavenumbers. The reported X‐ray crystallographic structure of cyclo(L ‐Ser‐L ‐Ser), shows that the DKP ring displays a near‐planar conformation, with both the two L ‐seryl side chains being folded above the ring. It is hypothesized that the crystal packing forces constrain the DKP ring in a planar conformation and it is probable that the lower energy boat conformation may prevail in the aqueous environment. Raman scattering and Fourier‐transform infrared (FT‐IR) spectra of solid state and aqueous solution samples of cyclo(L ‐Ser‐L ‐Ser) are reported and discussed. Vibrational band assignments have been made on the basis of comparisons with the calculated vibrational spectra and band wavenumber shifts upon deuteration of labile protons. The experimental Raman and IR results for solid‐state samples show characteristic amide I vibrations which are split (Raman: 1661 and 1687 cm⁻¹, IR: 1666 and 1680 cm⁻¹), possibly due to interactions between molecules in a crystallographic unit cell. The cis amide I band is differentiated by its deuterium shift of ∼30 cm⁻¹, which is larger than that previously reported for trans amide I deuterium shifts. A cis amide II mode has been assigned to a Raman band located at 1520 cm⁻¹. The occurrence of this cis amide II mode at a wavenumber above 1500 cm⁻¹ concurs with results of previously examined CDAP molecules with low molecular weight substituents on the C^α atoms, and is also indicative of a relatively unstrained DKP ring. Copyright © 2009 John Wiley & Sons, Ltd.     

Vibrational spectroscopy and crystal structure analysis of two polymorphs of the di‐amino acid peptide cyclo(L‐Glu‐L‐Glu)

Cyclo(L ‐Glu‐L ‐Glu) has been crystallised in two different polymorphic forms. Both polymorphs are monoclinic, but form 1 is in space group P2₁ and form 2 is in space group C2. Raman scattering and FT‐IR spectroscopic studies have been conducted for the N,O‐protonated and deuterated derivatives. Raman spectra of orientated single crystals, solid‐state and aqueous solution samples have also been recorded. The different hydrogen‐bonding patterns for the two polymorphs have the greatest effect on vibrational modes with N H and CO stretching character. DFT (B3‐LYP/cc‐pVDZ) calculations of the isolated cyclo(L ‐Glu‐L ‐Glu) molecule predict that the minimum energy structure, assuming C₂ symmetry, has a boat conformation for the diketopiperazine ring with the two L ‐Glu side chains being folded above the ring. The calculated geometry is in good agreement with the X‐ray crystallographic structures for both polymorphs. Normal coordinate analysis has facilitated the band assignments for the experimental vibrational spectra. Copyright © 2009 John Wiley & Sons, Ltd.     

High‐pressure Raman spectroscopic and other structural studies of hydrotalcites containing intercalated dicarboxylic acid anions

The results of pressure‐tuning Raman spectroscopic, X‐ray powder diffraction and solid‐state ¹³C‐NMR studies of selected dicarboxylate anions intercalated in a Mg–Al layered double hydroxide lattice are reported. The pressure dependences of the vibrational modes are linear for pressures up to 4.6 GPa, indicating that no phase transitions occur. The interlayer spacings show that the oxalate, malonate and succinate dianions are oriented perpendicular to the layers, but the glutarate and adipate are tilted. The solid‐state ¹³C‐NMR spectra of these materials show full chemical shift anisotropy and, therefore, the anions are not mobile at room temperature. Copyright © 2011 John Wiley & Sons, Ltd.     

The analysis of pH‐dependent protonated conformers of 1‐hydroxyethylidene‐1,1‐diphosphonic acid by means of FT‐Raman spectroscopy,multivariate curve resolution and DFT modelling

1‐Hydroxyethylidene‐1,1‐diphosphonic acid (HEDP) solutions in the pH range 0.98–13.00 were analysed using FT‐Raman spectroscopy and ³¹P and ²³Na NMR spectroscopy. Vibrational bands for different protonated species were observed in the Raman spectra, whereas only a single NMR signal that shifted with pH was observed for all samples over the entire pH range. No significant shift in the ²³Na NMR signal was observed, confirming that formation of Na⁺(aq) complexes did not take place; hence, no interference with the different protonated forms of HEDP occurred. Vibrational bands were assigned using density functional theory(DFT)‐calculated spectra of the most likely conformers in solution. Multivariate curve resolution was performed on the Raman spectra in the region containing the PO stretching vibrations to determine the number of protonated species formed over the entire pH range. Chemometric analysis compares very favourably with the experimental species distribution diagram which was generated using the reported log K_H values. Copyright © 2009 John Wiley & Sons, Ltd.     

Investigation of L(+)-Ascorbic acid with Raman spectroscopy in visible and UV light

Abstract: Raman spectroscopy investigations of l(+)-ascorbic acid and its mono- and di-deprotonated anions (AH^? and A^2?) are reviewed and new measurements reported with several wavelengths, 229, 244, 266, 488, and 532 nm. Results are interpreted, assisted by new DFT/B3LYP quantum chemical calculations with 6-311++G(d,p) basis sets for several conformations of ascorbic acid and the anions. Raman spectra were measured during titration with NaOH base in an oxygen-poor environment to avoid fluorescence when solutions were alkaline. The ultraviolet (UV) absorption band for ascorbic acid in aqueous solution at ～247 nm was found to cause strong resonance enhancement for the ring C?C stretching mode (called B) at ～1692 cm^?1. The ascorbate mono-anion absorbs at ～264.8 nm giving Raman resonance enhancement for the same ring C–C bond stretching, downshifted to ～1591 cm^?1. Finally, for the ascorbate di-anion, absorption was found at ～298.4 nm with molar absorptivity of ～7,000 L mol^?1 cm^?1 and below ～220 nm. With UV light (244 and 266 nm), strongly basic solutions gave pronounced Raman resonance enhancement at ～1556 cm^?1. Relatively weak preresonance enhancement was seen for A^2? when excitation was done with 229 nm UV light, allowing water bands to become observable as for normal visible light Raman spectra.     

Analytical FT‐Raman spectroscopy to chemotype Leptospermum scoparium and generate predictive models for screening for dihydroxyacetone levels in floral nectar

Leptospermum scoparium (Mānuka) is the source of nectar for Unique Mānuka Factor (UMF) honey. The chemical component of interest to this study is dihydroxyacetone (DHA). DHA is the precursor for the chemical methylglyoxyl which is the main chemical responsible for the UMF activity in Manuka honey. Screening commercially bred plants for increased DHA synthesis in L. scoparium is a critical factor in growing the Manuka Honey industry in New Zealand. FT‐Raman spectroscopy, in combination with principal component analysis and partial least squares regression analysis, was investigated as an analytical tool for building a screening model for DHA in the nectar of L. scoparium. Leaf samples of seven cultivars of the species L. scoparium were collected in an attempt to correlate metabolic factors in the plant with DHA synthesis in the nectar. Leaf material was analysed using Fourier transform‐raman spectroscopy (FT‐Raman). The DHA levels in nectar samples of the same cultivars were measured using standard LC‐MS methods. This study showed that the application of multivariate analysis of FT‐Raman spectra from leaf material is a useful tool to screen for DHA potential in L. scoparium. The PLS regression shows that we can screen for DHA concentrations in the range of 3300–7600 mg/kg plus or minus 20% standard error and can distinguish low medium and high DHA synthesis in the group of plants studied. The model for predicting DHA concentrations is influenced by a significant contribution from the spectral variance due to beta‐carotene and other highly scattering compounds that are not directly correlated with UMF. Copyright © 2014 John Wiley & Sons, Ltd.     

Discrimination of carotenoid and flavonoid content in petals of pansy cultivars (Viola x wittrockiana) by FT‐Raman spectroscopy

Fourier Transform Raman spectroscopy (FT‐Raman) has been applied for the non‐destructive in‐situ analysis of pigments on differently colored flower petals of pansy cultivars (Viola x wittrockiana). The main target of the present study was to investigate how far the Raman mapping technique through FT‐Raman spectroscopy and cluster analysis of the Raman spectra is a potential method for the direct, in‐situ discrimination of flavonoids (flavonols against anthocyanins) and of carotenoids occurring in flowers, using intact and differently colored flower petal of Viola x wittrockiana for this case study. In order to get more information about the reliability of the direct in‐situ flavonoid detection by the Raman method, pigments extracts of the petals were separated by thin‐layer chromatography (TLC) and investigated by Raman spectroscopy. Hierarchical cluster analysis (HCA) of the Raman spectra from reference pigments (carotenoids, anthocyanins and flavonols), from areas of the flower petals, and from the TLC extracts allowed discriminating the various pigments, in particular flavonoids (flavonols against anthocyanins) and carotenoids. With a two‐dimensional Raman mapping technique, which provides a chemical image of the sample under investigation, we determined by cluster analysis the distribution of carotenoids, anthocyanins and flavonols from the outer layer of the petals, and by integrating through suitable spectral regions selected as characteristic markers for particular pigments their relative concentration could approximately be determined. We found a satisfactory correlation between the patterns seen on the visible images and the patterns on the chemical images obtained by Raman mapping. Copyright © 2011 John Wiley & Sons, Ltd.