When and How Do Diaminocarbenes Dimerize?

No example of a simple uncatalyzed dimerization of a diaminocarbene has been clearly established, so it is timely to ask what factors control the thermodynamics of this reaction, and what mechanisms are responsible for the observed dimerizations? In agreement with qualitative experimental observations, the dimerizations of simple five‐ and six‐membered‐ring diaminocarbenes are calculated to be 100 kJ mol^?1 less favorable than those of acyclic counterparts. This large difference is semiquantitatively accounted for by bond and torsional angle changes around the carbene centers. Carbenes such as (Et₂N)₂C are kinetically stable in THF at 25 °C in agreement with calculated energy barriers, but they rapidly dimerize in the presence of the corresponding formamidinium ion. This proton‐catalyzed process is probably the most common mechanism for dimer formation, and involves formation of C‐protonated dimers, which can be observed in suitable cases. The possibility of alkali‐metal‐promoted dimerization is raised, and circumstantial evidence for this is presented.     

Transmetalation reactions from Fischer carbene complexes to late transition metals: a DFT study

Transmetalation reactions from chromium(0) Fischer carbene complexes to late-transition-metal complexes (palladium(0), copper(I), and rhodium(I)) have been studied computationally by density functional theory. The computational data were compared with the available experimental data. In this study, the different reaction pathways involving the different metal atoms have been compared with each other in terms of their activation barriers and reaction energies. Although the reaction profiles for the transmetalation reactions to palladium and copper are quite similar, the computed energy values indicate that the process involving palladium as catalyst is more favorable than that involving copper. In contrast to these transformations, which occur via triangular heterobimetallic species, the transmetalation reaction to rhodium leads to a new heterobimetallic species in which a carbonyl ligand is also transferred from the Fischer carbene to the rhodium catalyst. Moreover, the structure and bonding situation of the so far elusive heterobimetallic complexes are briefly discussed.     

Addition of carbenes to the sidewalls of single-walled carbon nanotubes

The addition of carbenes CX(2) (X=H, Cl) to single-walled carbon nanotubes (SWNTs) was investigated by density functional theory and finite, hydrogen-terminated nanotube clusters or periodic boundary conditions in conjunction with basis sets of up to polarized triple-zeta quality. For armchair [(3,3) to (12,12)] and zigzag tubes [(3,0) to (18,0)], reaction of CH(2) with the C--C bond oriented along the tube axis (A) is less exothermic than with those C--C bonds having circumferential (C) orientation. This preference decreases monotonically with increasing tube diameter for armchair, but not for zigzag tubes; here, tubes with small band gaps have a very low preference for circumferential addition. Axial addition results in cyclopropane products, while circumferential addition produces "open" structures for both armchair and zigzag tubes. The barriers for addition of dichlorocarbene to a (5,5) SWNT, studied for a finite C(90)H(20) cluster, are higher than that for addition to C(60), in spite of similar diameters of the carbon materials. Whereas addition of CCl(2) to [60]fullerene proceeds in a concerted fashion, addition to a (5,5) armchair SWNT is predicted to occur stepwise and involve a diradicaloid intermediate according to B3LYP, PBE, and GVB-PP computations. Addition to C bonds of (5,5) armchair tubes resulting in the thermodynamically more stable insertion products is kinetically less favorable than that to A bonds yielding cyclopropane derivatives.     

Reaction of an N‐Heterocyclic Carbene‐Stabilized Silicon(II) Monohydride with Alkynes: [2+2+1] Cycloaddition versus Hydrogen Abstraction

An in depth study of the reactivity of an N‐heterocyclic carbene (NHC)‐stabilized silylene monohydride with alkynes is reported. The reaction of silylene monohydride 1 , tBu₃Si(H)Si←NHC, with diphenylacetylene afforded silole 2 , tBu₃Si(H)Si(C₄Ph₄). The density functional theory (DFT) calculations for the reaction mechanism of the [2+2+1] cycloaddition revealed that the NHC played a major part stabilizing zwitterionic transition states and intermediates to assist the cyclization pathway. A significantly different outcome was observed, when silylene monohydride 1 was treated with phenylacetylene, which gave rise to supersilyl substituted 1‐alkenyl‐1‐alkynylsilane 3 , tBu₃Si(H)Si(CH?CHPh)(C?CPh). Mechanistic investigations using an isotope labelling technique and DFT calculations suggest that this reaction occurs through a similar zwitterionic intermediate and subsequent hydrogen abstraction from a second molecule of phenylacetylene.     

N-Heterocyclic Carbene Organocatalysis: With or Without Carbenes?

In this work the mechanism of the aldehyde umpolung reactions, catalyzed by azolium cations in the presence of bases, was studied through computational methods. Next to the mechanism established by Breslow in the 1950s that takes effect through the formation of a free carbene, we have suggested that these processes can follow a concerted asynchronous path, in which the azolium cation directly reacts with the substrate, avoiding the formation of the carbene intermediate. We hereby show that substituting the azolium cation, and varying the base or the substrate do not affect the preference for the concerted reaction mechanism. The concerted path was found to exhibit low barriers also for the reactions of thiamine with model substrates, showing that this path might have biological relevance. The dominance of the concerted mechanism can be explained through the specific structure of the key transition state, avoiding the liberation of the highly reactive, and thus unstable carbene lone pair, whereas activating the substrate through hydrogen-bonding interactions. Polar and hydrogen-bonding solvents, as well as the presence of the counterions of the azolium salts facilitate the reaction through carbenes, bringing the barriers of the two reaction mechanisms closer, in many cases making the concerted path less favorable. Thus, our data show that by choosing the exact components in a reaction, the mechanism can be switched to occur with or without carbenes.     

Theory of the Formation and Decomposition of N‐Heterocyclic Aminooxycarbenes through Metal‐Assisted [2+3]‐Dipolar Cycloaddition/Retro‐Cycloaddition

The theoretical background of the formation of N‐heterocyclic oxadiazoline carbenes through a metal‐assisted [2+3]‐dipolar cycloaddition (CA) reaction of nitrones R¹CH?N(R²)O to isocyanides C?NR and the decomposition of these carbenes to imines R¹CH?NR² and isocyanates O?C?NR is discussed. Furthermore, the reaction mechanisms and factors that govern these processes are analyzed in detail. In the absence of a metal, oxadiazoline carbenes should not be accessible due to the high activation energy of their formation and their low thermodynamic stability. The most efficient promotors that could assist the synthesis of these species should be “carbenophilic” metals that form a strong bond with the oxadiazoline heterocycle, but without significant involvement of π‐back donation, namely, Au^I, Au^III, Pt^II, Pt^IV, Re^V, and Pd^II metal centers. These metals, on the one hand, significantly facilitate the coupling of nitrones with isocyanides and, on the other hand, stabilize the derived carbene heterocycles toward decomposition. The energy of the LUMO_CNR and the charge on the N atom of the C?N group are principal factors that control the cycloaddition of nitrones to isocyanides. The alkyl‐substituted nitrones and isocyanides are predicted to be more active in the CA reaction than the aryl‐substituted species, and the N,N,C‐alkyloxadiazolines are more stable toward decomposition relative to the aryl derivatives.     

Theoretical Studies on the Asymmetric Baeyer–Villiger Oxidation Reaction of 4‐Phenylcyclohexanone with m‐Chloroperoxobenzoic Acid Catalyzed by Chiral Scandium(III)–N,N′‐Dioxide Complexes

The mechanism and enantioselectivity of the asymmetric Baeyer–Villiger oxidation reaction between 4‐phenylcyclohexanone and m‐chloroperoxobenzoic acid ( m ‐CPBA ) catalyzed by Sc^III–N,N′‐dioxide complexes were investigated theoretically. The calculations indicated that the first step, corresponding to the addition of m ‐CPBA to the carbonyl group of 4‐phenylcyclohexanone, is the rate‐determining step (RDS) for all the pathways studied. The activation barrier of the RDS for the uncatalyzed reaction was predicted to be 189.8 kJ mol^?1. The combination of an Sc^III–N,N′‐dioxide complex and the m ‐CBA molecule can construct a bifunctional catalyst in which the Lewis acidic Sc^III center activates the carbonyl group of 4‐phenylcyclohexanone while m ‐CBA transfers a proton, which lowers the activation barrier of the addition step (RDS) to 86.7 kJ mol^?1. The repulsion between the m‐chlorophenyl group of m ‐CPBA and the 2,4,6‐iPr₃C₆H₂ group of the N,N′‐dioxide ligand, as well as the steric hindrance between the phenyl group of 4‐phenylcyclohexanone and the amino acid skeleton of the N,N′‐dioxide ligand, play important roles in the control of the enantioselectivity.     

Copper Versus Thioether‐Centered Oxidation: Mechanistic Insights into the Non‐Innocent Redox Behavior of Tripodal Benzimidazolylaminothioether Ligands

A series of Cu⁺ complexes with ligands that feature varying numbers of benzimidazole/thioether donors and methylene or ethylene linkers between the central nitrogen atom and the thioether sulfur atoms have been spectroscopically and electrochemically characterized. Cyclic voltammetry measurements indicated that the highest Cu²⁺/Cu⁺ redox potentials correspond to sulfur‐rich coordination environments, with values decreasing as the thioether donors are replaced by nitrogen‐donating benzimidazoles. Both Cu²⁺ and Cu⁺ complexes were studied by DFT. Their electronic properties were determined by analyzing their frontier orbitals, relative energies, and the contributions to the orbitals involved in redox processes, which revealed that the HOMOs of the more sulfur‐rich copper complexes, particularly those with methylene linkers (? N? CH₂? S? ), show significant aromatic thioether character. Thus, the theoretically predicted initial oxidation at the sulfur atom of the methylene‐bridged ligands agrees with the experimentally determined oxidation waves in the voltammograms of the NS₃‐ and N₂S₂‐type ligands as being ligand‐based, as opposed to the copper‐based processes of the ethylene‐bridged Cu⁺ complexes. The electrochemical and theoretical results are consistent with our previously reported mechanistic proposal for Cu²⁺‐promoted oxidative C? S bond cleavage, which in this work resulted in the isolation and complete characterization (including by X‐ray crystallography) of the decomposition products of two ligands employed, further supporting the novel reactivity pathway invoked. The combined results raise the possibility that the reactions of copper–thioether complexes in chemical and biochemical systems occur with redox participation of the sulfur atom.     

Dötz Benzannulation Reactions: Heteroatom and Substituent Effects in Chromium Fischer Carbene Complexes

We have carried out a theoretical investigation of the Dötz reaction between acetylene and a series of chromium Fischer‐type carbenes [(CO)₅Cr?C(X)R] with different representative substituents (R=CH?CH₂, Ph) and heteroatom ligands (X=OH, NH₂, OCH₃, N(CH₃)₂) by using density functional theory with the B3LYP functional. We have studied the Dötz and chromahexatriene mechanisms of benzannulation and also the reaction mechanism leading to cyclopentannulation. For the benzannulation, it was found that the most likely mechanism in the case of vinylcarbenes is the chromahexatriene route, whereas for phenylcarbenes, the Dötz route via a ketene intermediate is clearly the most favorable. The reactions leading to the cyclopentannulated and benzannulated products are more exothermic with vinylcarbenes than with phenylcarbenes and also more exothermic with alkoxycarbenes than with aminocarbenes. The relative stability of the cyclopentannulated products as compared with the benzannulated products increases for bulkier X substituents and on going from alkoxy‐ to aminocarbenes. The kinetic data concurs with the experimental product distribution found for vinylcarbenes, by which mainly benzannulated products are obtained, and dimethylaminophenylcarbenes, which lead exclusively to cyclopentannulated adducts.     

Structure Sensitivity of CO Oxidation on Co3O4: A DFT Study

The reaction mechanism of CO oxidation on the Co₃O₄ (110) and Co₃O₄ (111) surfaces is investigated by means of spin‐polarized density functional theory (DFT) within the GGA+U framework. Adsorption situation and complete reaction cycles for CO oxidation are clarified. The results indicate that 1) the U value can affect the calculated energetic result significantly, not only the absolute adsorption energy but also the trend in adsorption energy; 2) CO can directly react with surface lattice oxygen atoms (O_2f/O_3f) to form CO₂ via the Mars–van Krevelen reaction mechanism on both (110)‐B and (111)‐B; 3) pre‐adsorbed molecular O₂ can enhance CO oxidation through the channel in which it directly reacts with molecular CO to form CO₂ [O₂(a)+CO(g)→CO₂(g)+O(a)] on (110)‐A/(111)‐A; 4) CO oxidation is a structure‐sensitive reaction, and the activation energy of CO oxidation follows the order of Co₃O₄ (111)‐A(0.78 eV)>Co₃O₄ (111)‐B (0.68 eV)>Co₃O₄ (110)‐A (0.51 eV)>Co₃O₄ (110)‐B (0.41 eV), that is, the (110) surface shows higher reactivity for CO oxidation than the (111) surface; 5) in addition to the O_2f, it was also found that Co³⁺ is more active than Co²⁺, so both O_2f and Co³⁺ control the catalytic activity of CO oxidation on Co₃O₄, as opposed to a previous DFT study which concluded that either Co³⁺ or O_2f is the active site.     

Computational Study on the Attack of .OH Radicals on Aromatic Amino Acids

The attack of hydroxyl radicals on aromatic amino acid side chains, namely phenylalanine, tyrosine, and tryptophan, have been studied by using density functional theory. Two reaction mechanisms were considered: 1) Addition reactions onto the aromatic ring atoms and 2) hydrogen abstraction from all of the possible atoms on the side chains. The thermodynamics and kinetics of the attack of a maximum of two hydroxyl radicals were studied, considering the effect of different protein environments at two different dielectric values (4 and 80). The obtained theoretical results explain how the radical attacks take place and provide new insight into the reasons for the experimentally observed preferential mechanism. These results indicate that, even though the attack of the first ^.OH radical on an aliphatic C atom is energetically favored, the larger delocalization and concomitant stabilization that are obtained by attack on the aromatic side chain prevail. Thus, the obtained theoretical results are in agreement with the experimental evidence that the aromatic side chain is the main target for radical attack and show that the first ^.OH radical is added onto the aromatic ring, whereas a second radical abstracts a hydrogen atom from the same position to obtain the oxidized product. Moreover, the results indicate that the reaction can be favored in the buried region of the protein.     

A Theoretical Study on the Mechanism of C2H4 Oxidation over a Neutral V3O8 Cluster

Density functional theory (DFT) calculations are used to investigate the reaction mechanism of V₃O₈+C₂H₄. The reaction of V₃O₈ with C₂H₄ produces V₃O₇CH₂+HCHO or V₃O₇+CH₂OCH₂ overall barrierlessly at room temperature, whereas formation of hydrogen‐transfer products V₃O₇+CH₃CHO is subject to a tiny overall free energy barrier (0.03 eV), although the formation of the last‐named pair of products is thermodynamically more favorable than that of the first two. These DFT results are in agreement with recent experimental observations. The (O_b)₂V(O_tO_t)^. (b=bridging, t=terminal) moiety containing the oxygen radical in V₃O₈ is the active site in the reaction with C₂H₄. Similarities and differences between the reactivities of (O_b)₂V(O_tO_t)^. in V₃O₈ and the small VO₃ cluster [(O_t)₂VO_t^.] are discussed. Moreover, the effect of the support on the reactivity of the (O_b)₂V(O_tO_t)^. active site is evaluated by investigating the reactivity of the cluster VX₂O₈, which is obtained by replacing the V atoms in the (O_b)₃VO_t support moieties of V₃O₈ with X atoms (X=P, As, Sb, Nb, Ta, Si, and Ti). Support X atoms with different electronegativities influence the oxidative reactivity of the (O_b)₂V(O_tO_t)^. active site through changing the net charge of the active site. These theoretical predictions of the mechanism of V₃O₈+C₂H₄ and the effect of the support on the active site may be helpful for understanding the reactivity and selectivity of reactive O^. species over condensed‐phase catalysts.     

Catalytic Water Splitting with an Iridium Carbene Complex: A Theoretical Study

Catalytic water oxidation at Ir (OH)⁺ ( Ir =IrCp*(Me₂NHC), where Cp*=pentamethylcyclopentadienyl and Me₂NHC=N,N′‐dimethylimidazolin‐2‐ylidene) can occur through various competing channels. A potential‐energy surface showing these various multichannel reaction pathways provides a picture of how their importance can be influenced by changes in the oxidant potential. In the most favourable calculated mechanism, water oxidation occurs via a pathway that includes four sequential oxidation steps, prior to formation of the O?O bond. The first three oxidation steps are exothermic upon treatment with cerium ammonium nitrate and lead to formation of Ir ^V(?O)(O ^. )⁺, which is calculated to be the most stabile species under these conditions, whereas the fourth oxidation step is the potential‐energy‐determining step. O?O bond formation takes place by coupling of the two oxo ligands along a direct pathway in the rate‐limiting step. Dissociation of dioxygen occurs in two sequential steps, regenerating the starting material Ir (OH)⁺. The calculated mechanism fits well with the experimentally observed rate law: v=k_obs[ Ir ][oxidant]. The calculated effective barrier of 24.6 kcal mol^?1 fits well with the observed turnover frequency of 0.88 s^?1. Under strongly oxidative conditions, O?O bond formation after four sequential oxidation steps is the preferred pathway, whereas under milder conditions O?O bond formation after three sequential oxidation steps becomes competitive.     

The preferred reaction path for the oxidation of methanol by PQQ-containing methanol dehydrogenase: addition-elimination versus hydride-transfer mechanism

The catalytic oxidation of methanol to formaldehyde by pyrroloquinoline quinone (PQQ)-containing methanol dehydrogenase (MDH) was investigated at density functional B3LYP level. The still controversial addition-elimination and hydride-transfer reaction mechanisms were analysed. Computations performed in the gas phase and in the protein environment indicated that both suggested reaction sequences involve very high activation barriers. In this situation, the reactions should have scarce probability to occur and the preference for one of the two paths cannot be stated. Here, we will show how some corrections to the successive steps in the addition-elimination mechanism can sensibly decrease the activation barriers height, making possible the determination of the MDH-preferred catalytic path.