A high performance method for thermodynamic study on the binding of copper ion and glycine with Alzheimer’s amyloid β peptide

The interaction of Cu²⁺ to the first 16 residues of the Alzheimer’s amyloid β peptide, Aβ(1–16) was studied by isothermal titration calorimetry at pH 7.2 and 37°C in aqueous solution. The Gholamreza Rezaei Behbehani (GRB) solvation model was used to reproduce the enthalpies of interactions of Aβ(1–16) with glycine, Gly+Aβ(1–16), and Cu²⁺ ions, Cu²⁺ +Aβ(1–16), over the whole range of Cu2+ concentrations. The binding parameters recovered from the solvation model were attributed to the structural change of Aβ(1–16) due to the glycine and Cu²⁺ interactions. It was found that there is a set of two identical binding sites for Cu²⁺ ions. p=2 indicates that the binding has positive cooperativity in the two binding sites. Aβ(1–16) structure is destabilized greatly as a result of binding to Cu²⁺ ions.     

Effects of substituent on the DNA-binding of ruthenium(II) complexes containing asymmetric tridentate intercalative ligands

Three novel unsymmetric tridentate ligands, namely, ptmi (ptmi = 3-(1,10-phenanthroline-2-yl)-as-triazino[5,6-f]-5-methoxyisatin), pti (pti = 3-(1,10-phenanthroline-2-yl)-as-triazino-[5,6-f]isatin), ptni (ptni = 3-(1,10-phenanthroline-2-yl)-as-triazino[5,6-f]-5-nitroisatin), and their complexes [Ru(tpy)(ptmi)](ClO₄)₂ (tpy = 2,2′:6′,2″-terpyridine) (1), [Ru(tpy)(pti)](ClO₄)₂ (2), and [Ru(tpy)(ptni)](ClO₄)₂ (3) were prepared and characterized by elemental analysis, ¹H NMR, ES–MS. The electrochemical behaviors were studied by cyclic voltammetry. The DNA-binding properties of these complexes were investigated by the spectroscopic method, viscosity measurements, and thermal denaturation. Theoretical studies on these complexes were also performed with the density functional theory (DFT) method. The experimental results showed that these complexes bind to calf thymus (CT-DNA) in an intercalative mode. The order of DNA-binding affinities (A) of these complexes is A(1) < A(2) < A(3). The trend in the DNA-binding affinities of this series of complexes can be reasonably explained by the DFT calculations.     

Synthesis and Characterizations of Ferrocenyl Carbonyl Chromium and Cobalt Clusters

Two novel bimetallic complexes, [Cr(CO)₃(η ⁶-C₆H₅)–C≡C–C₆H₄–Fc] (Fc = C₅H₅FeC₅H₄] (1) and [Cr(CO)₃(η ⁶-C₆H₅)–C ≡ C–Fc–C(CH₃)₂–Fc] (3), were synthesized by the Sonogashira coupling reaction. By using of (1) and (3) as ligands to react with Co₂(CO)₈, two others novel polymetallic complexes, [Cr(CO)₃(η ⁶-C₆H₅){Co₂(CO)₆-η ²-μ ²-C≡C–}–C₆H₄–Fc] (2) and [Cr(CO)₃(η ⁶-C₆H₅){Co₂(CO)₆-η ²-μ ²-C≡C–}Fc–C(CH₃)₂–Fc] (4) were obtained. Four carbonyl complexes were characterized by elemental analysis, FT-IR, NMR and MS. The molecular structures of complexes (1), (2) and (4) were determined by single crystal X-ray diffraction. The interactions among the ferrocenyl, Cr(CO)₃ and Co₂(CO)₆-η ²-μ ²-C≡C– units were investigated by cyclic voltammetry.     

Molecular Structure and Conformational Composition of 1-[(Methylthio)methyl]-2-nitrobenzene (MTMNB): A Theoretical and Experimental Study

The conformational composition of gaseous MTMNB and the molecular structures of the rotational forms have been studied by electron diffraction at 130^∘C aided by results from ab initio and density functional theory calculations. The conformational potential energy surface has been investigated by using the B3LYP/6-31G(d,p) method. As a result, six minimum-energy conformers have been identified. Geometries of all conformers were optimized using MP2/6-31G(d,p), B3LYP/6-31G(d,p), and B3LYP/cc-pVTZ methods. These calculations resulted in accurate geometries, relative energies, and harmonic vibrational frequencies for all conformers. The B3LYP/cc-pVTZ energies were then used to calculate the Boltzmann distribution of conformers. The best fit of the electron diffraction data to calculated values was obtained for the six conformer model, in agreement with the theoretical predictions. Average parameter values (r_a in angstroms, angle α in degrees, and estimated total errors given in parentheses) weighted for the mixture of six conformers are r(C–C) = 1.507(5), r(C–C)_{ring, av} = 1.397(3), r(C–S)_av = 1.814(4), r(C–N) = 1.495(4), r(N–O)_av = 1.223(3), ∠(C–C–C)_ring = 116.0–122.5, ∠ C6–C4–C7 = 118.2(4), ∠ C–C–S = 113.6(6), ∠ C–S–C = 98.5(12), ∠ N–C–C4 = 121.9(3), ∠(O–N–C)_av = 116.8(3), ∠ O–N–O = 127.0(4). Torsional angles could not be refined. Theoretical B3LYP/cc-pVTZ torsional angles for the rotation about C–N bond, φ_C−N, were found to be 30.5–36.5^∘ for different conformers. As to internal rotation about C–C and C–S bonds, values of φ_C−C = 68–118^∘ and φ_C−S = 66–71^∘ were obtained for the three most stable conformers with gauche orientation with respect to these bonds. Some conclusions of this work were presented in a short communication in Russ. J. Phys. Chem. 2005, 79, 1701.     

Kinetic Analysis of Thermal Decomposition of Ca(OH)2 Formed During Hydration of Commercial Portland Cement by DSC

In this paper, evaluation of kinetic parameters (the activation energy – E,the pre-exponential factor – A and the reaction order – n) with simultaneous determination of the possible reaction mechanism of thermal decomposition of calcium hydroxide (portlandite), Ca(OH)₂ formed during hydration of commercial Portland-slag cement, by means of differential scanning calorimetry (DSC) in non-isothermal conditions with a single heating–rate plot has been studied and discussed. The kinetic parameters and a mechanism function were calculated by fitting the experimental data to the integral, differential and rate equation methods. To determine the most probable mechanism, 30 forms of the solid-state mechanism functions, f(α_c) have been tried. Having used the procedure developed and the appropriate program support, it has been established that the non-isothermal thermal decomposition of calcium hydroxide in the acceleratory period (0.004<α_c<0.554) can be described by the rate equation: d α_c/dT=A/βexp(−E/RT)f(α_c), which is based on the concept of the mechanism reaction:f(α_c)=2(α_c)^1/2. The mechanism functions as well as the values of the kinetic parameters are in good agreement with those given in literature. This revised version was published online in August 2006 with corrections to the Cover Date.     

TPR-study of Substitution Effects on Reducibility and Oxidative Non-stoichiometry of La0.8A'0.2MnO3+δ Perovskites

La_0.8 A'_0.2 MnO_3+δ (A'=Sr, Ba, K, Cs) perovskites were studied by temperature-programmed reduction. The amount of non-stoichiometric oxygen was found to decrease from δ=0.16 for LaMnO_3+δ to δ=0.07 (Sr-), 0.06 (Ba-), 0.07 (K-) and 0.03 (Cs-) substituted manganites. The reducibility at low and mean-temperatures (t<500°C) increased in the sequence La<(La, Sr)≈(La, Ba)<(La, Cs)<(La, K). This revised version was published online in July 2006 with corrections to the Cover Date.     

Spectrum of states in icosahedral structures of the electronic configuration gn (N = 1–7). 1. Invariant expansion for integrals and energies

The energy spectrum of the states that appear in structures of icosahedral (I,I_h symmetry with open electronic shells g^N (dim g = 4; N = 1–7) is reported. The energies are obtained in terms of integral invariants (reduced matrix elements of electron-electron interaction) H^k (g, g). The latter are analogs of the Slater-Condon parameters F^k(l,l) for atoms with the l^N electronic configuration. A similar representation is proposed for the integrals mm’≨’) of electron-electron interaction on the 4-fold degenerate g orbitals in the “standard” representation. The relation between the terms of the g^N(I,I_h) configuration and the parent states of the orthogonal group O⁺(4) is discussed. Translated fromZhurnal Strukturnoi Khimii, Vol. 38, No. 1, pp. 3–13, January–February, 1997.     

Conformational properties of <Emphasis Type="Italic">ortho</Emphasis>-nitrobenzenesulfonamide in gas and crystalline phases. Intra- and intermolecular hydrogen bond

A combined gas-phase electron diffraction and quantum chemical (B3LYP/6-311+G**, B3LYP/cc-pvtz, MP2/cc-pvtz) study of molecular structure of 2-nitrobenzenesulfonamide (2-NBSA) was carried out. Quantum chemical calculations showed that 2-NBSA has four conformers, two of which are stabilized by intramolecular hydrogen bond. The latter (with the S–N bond in a close to orthogonal position around the phenyl ring and differing from each other by staggered or eclipsed positions of the N–H and S=O bonds in the SO₂NH₂ group) presented in a saturated vapor over 2-NBSA at T = 433 (3) K in commensurable amounts. Experimental internuclear distances (Ǻ) for the staggered conformer are (?): r _h1(C–H)_av. = 1.071(9), r _h1(C–C)_av. = 1.390(4), r _h1(C–S) = 1.789(8), r _h1(S=O)_av. = 1.427(6), r _h1(S–N) = 1.644(6), r _h1(N–O)_av. = 1.221(4), r _h1(C′–N) = 1.487(8), r _h1(N–H)_av. = 1.014. Calculations at B3LYP/cc-pvtz level were performed to determine the structure and the energies of the transition states between conformers. It was shown that the conformer structures of free molecule differ from those of a molecule stabilized by intermolecular hydrogen bonds in a crystal. Influence of a substituent X (X = –CH₃, –NO₂) on conformational features of the ortho-substituted benzenesulfonamide was established.     

The influence of steric hindrance on conformation properties and molecular structure of 2,4,6-trinitrobenzenesulfonic acid: gas electron diffraction and quantum chemical calculations

A combined gas-phase electron diffraction and quantum chemical (B3LYP/cc-pVTZ, MP2/cc-pVDZ) study of molecular structure of 2,4,6-trinitrobenzenesulfonic acid (2,4,6-tri-NBSA) was carried out. Quantum chemical calculations showed that 2,4,6-tri-NBSA possesses six conformers, which form three pairs of enantiomers with the relative energy of 0, 4.4/3.9, and 2.5/2.5 kcal/mol. It was experimentally established that at T = 444(5) K a saturated vapor over 2,4,6-tri-NBSA is, predominantly (up to 93 mol.%), represented by a low-energy enantiomers II and II′ characterized by intramolecular hydrogen bond between an H atom of the hydroxyl group and one of the O atoms of the NO₂ group. Experimental internuclear distances for the low-energy enantiomers are (?): r _h1(C–C)_av. = 1.387(4), r _h1(C–S) = 1.811(6), r _h1(S=O)_av. = 1.424(4), r _h1(S–O) = 1.579(4), r _h1(N–O)_av. = 1.214(3), r _h1(C–N)_av. = 1.491(5). Geometry of the conformer II points on existance of strong steric interactions between SO₂OH group and two ortho-nitro groups. Analysis of the orbital interactions between the substituents and benzene ring was carried out. Geometric parameters and energies of transition states between conformers were calculated (B3LYP).     

Steric distortion of planar NiP<Subscript>2</Subscript>N<Subscript>2</Subscript> chromophores: a spectral,cyclic voltammetric and single crystal X-ray structural study

The complexes trans-[Ni(4-MP)₂(NCS)₂]·MeCN (1) and trans-[Ni(3-MP)₂(NCS)₂] (2) (4-MP = tri(4-methylphenyl)phosphine, 3-MP = tri(3-methylphenyl)phosphine) were prepared and characterized by IR, UV–visible, NMR spectra, CV, TGA and single crystal X-ray crystallography. Both the complexes have planar geometry and are diamagnetic. The Ni–P distances in both complexes are relatively short as a result of strong back donation from nickel to phosphorus. The phenyl rings in the 3-MP analogue (2) show increased pitching with reference to the plane formed by the ipso carbons due to increased steric effects. For complex (2), the N–Ni–N and P–Ni–P angles are significantly lower than the almost linear N–Ni–N and N–Ni–P angles observed for both complex (1) and trans-[Ni(PPh₃)₂(NCS)₂]. This observation indicates that the 3-methylphosphine ligand forces complex (2) to distort towards a tetrahedral geometry. IR spectra of both complexes show strong bands around 2,090 cm⁻¹ due to N-coordinated thiocyanate, while the electronic spectra contain d–d transitions around 452 nm. Cyclic voltammograms show that the irreversible one-electron reduction potentials increase in the following order: trans- [Ni(PPh₃)₂(NCS)₂] < trans- [Ni(3-MP)₂(NCS)₂] < trans-[Ni(4-MP)₂(NCS)₂], revealing the electron releasing effect of the methyl groups. The planar complexes exhibit interallogony in coordinating solvents.     

Thermal Expansion in the Zr and 1-, 2-valent Complex Phosphates of NaZr2(PO4)3 (NZP) Structure

A_5–4xZr_xZr(PO₄)₃ (A=Na, K;0≤x≤1.25), Na_1-xCd_0.5xZr₂(PO₄)₃ (0≤x≤1), Na_5–xCd_0.5xZr(PO₄)₃ (0≤x≤4) compositions which belong to the NZP structural family were synthesized using the sol-gel method. The lattice thermal expansion of members of these rows were determined up to 600°C by high-temperature X-ray diffractometry. The axial thermal expansion coefficients change from -5.8·10^-6to 7.5·10^-6 °C^-1 (α_a) and from 2.6·10^–6 to 22·10^–6 °C^-1 (α_c). These results, in addition to those for other NZP compounds allow us to explain their low thermal expansion. The mechanism can be attributed to strongly bonded three-dimensional network structure, the existence of structural holes capable to damp some of the thermal vibrations and anisotropyin the thermal expansion of the lattice. This revised version was published online in August 2006 with corrections to the Cover Date.     

Theoretical investigation of Wulf and Chappuis bands in the spectrum of ozone

The ground state and some lowest excited states of ozone are calculated by the semiempirical MNDO method using configuration interaction to explain the Wulf absorption band and photodissociation of ozone. The results of calculations show that³A₂(1³A′’) is the lowest excited triplet state of O₃; a transition to this state from the ground X¹ A₁ state is responsible for the weak Wulf absorption. The oscillator strength (f = 3.2·10^-7) and the radiative lifetime of the A₂ state (Τ = 0.01 s) are in agreement with recent ab initio calculations. Translated fromZhumal Struktumoi Khimii, Vol. 38, No. 6, pp. 1067–1073, November–December, 1997.     

Crystallographic and theoretical studies of 4,4′-dimethyl-7,7′-bi([1,2,5]thiadiazolo[3,4-b]pyridylidene)–chloranilic acid (1/1) with intermolecular O–H···N hydrogen bonds and S···O heteroatom interactions

Abstract  The molecular and crystal structure of a 1:1 co-crystal of 4,4′-dimethyl-7,7′-bi([1,2,5]thiadiazolo[3,4-b]pyridylidene)–chloranilic acid, (1), has been determined by X-ray diffraction at the monoclinic space group P2₁/c with cell parameters of a = 8.422(6), b = 7.343(4), c = 16.112(7) ?, β = 104.988(8)°, V = 962.5(10) ?³ and Z = 2. In the crystal structure, two components connect via the intermolecular O–H···N hydrogen bonds [2.804(4) ?] and S···O heteroatom interaction [2.945(3) ?] with R ₂ ²(7) couplings to form a unique and infinite one-dimensional supramolecular tape structure. The calculations of (1) at the HF/6-31G(d), MP2/6-31G(d), and B3LYP/6-31G(d) levels can almost reproduce X-ray geometry. In addition, the distances of the intermolecular O–H···N and S···O interactions by MP2/6-31G(d) and B3LYP/6-31G(d) levels agree well with those in the crystal. The calculated binding energies corrected BSSE and ZPE are −4.487 (HF), −7.473 (MP2), and −5.640 (B3LYP) kcal/mol. The results suggest that the complex (1) is very stable and the dispersion interaction is significantly important for the attractive intermolecular interaction in (1). The NBO analysis has revealed that the n(N) → σ*(O–H) interaction gives the strongest stabilization to the system and the major interaction for the intermolecular S···O contact is n(O) → σ*(S–N). Index Abstract  In the crystal structure of the title compound, the molecules are linked by intermolecular O–H···N hydrogen bonds and short S···O heteroatom interactions with R ₂ ²(7) couplings to construct a unique and infinite one-dimensional supramolecular tape structure.      

Thermal Study of A2O–(MoO3)2–P2O5 (A=Li, Na) Glasses

Alkali phosphomolybdate glasses have been prepared by quenching melted mixtures of P₂O₅, MoO₃ and A₂O(A=Li, Na). The composition dependence of the transition temperature of glasses belonging to ternary A₂O–(MoO₃)₂–P₂O₅ (A=Li, Na) systems is studied for several series of glasses corresponding to either a fixed A₂O rate or a constant Mo/P ratio. The interpretation of the results is based on the presence of different types of molybdenum and phosphorous structural groups and P–O–M (M=P, Mo) linkages in glasses. This revised version was published online in August 2006 with corrections to the Cover Date.     

Solubility of neptunium oxide in the KURT (KAERI Underground Research Tunnel) groundwater

The solubilities of NpO₂(s) in the KURT (KAERI Underground Research Tunnel) granitic groundwater with low ionic strength were measured experimentally and calculated by a geochemical code. Then these results were compared with each other as well as with foreign results. The concentrations of neptunium were measured as 6·10⁻⁸−2·10⁻⁸ mol/L at a pH = 9.5–11.1 and Eh = −0.2 V, and less than 5·10⁻⁹ mol/L at a pH = 11.8–13.0 and Eh = −0.3–0.44 V. The dominant aqueous species were presumed as Np(OH)_x(CO₃)_y ^4−x−2y complexes and Np(OH)₄(aq) at pH = 9.5–13 under the Eh<−0.2 V reducing condition.     

Studies on Non-isothermal Kinetics of the Thermal Decomposition of Eu2(BA)6(bipy)2

The thermal decomposition of Eu₂(BA)₆(bipy)₂ (BA=C₂H₅N^– ₂, benzoate; bipy=C₁₀H₈N₂, 2,2'-bipyridine)and its kinetics were studied under the non-isothermal condition by TG-DTG, IR and SEM methods. The kinetic parameters were obtained from analysis of the TG-DTG curves by the Achar method, the Madhusudanan-Krishnan-Ninan (MKN) method, the Ozawa method and the Kissinger method. The most probable mechanism function was suggested by comparing the kinetic parameters. The kinetic equation for the first stage can be expressed as: dα/dt=Aexp(–E/RT)3(1–α)^2/3. This revised version was published online in August 2006 with corrections to the Cover Date.     

Quasi-thermodynamics of Viscous Flow of Electrolyte Solutions in Aqueous, Non-aqueous and Mixed Aqueous Solvents

Viscosity B-coefficients for cesium chloride and lithium sulfate in methanol + water mixtures at 25 and 35 °C are reported. A general treatment of the quasi-thermodynamics of viscous flow of electrolyte solutions is described. ΔG ₃ ^Θ (1→1′), the contribution made to the Gibbs energy of activation of the solution by the influence of the solute on the solvent, is a function of solute–solvent interactions only; but, ΔH ₃ ^Θ (1→1′) and ΔS ₃ ^Θ (1→1′) also reflect the solvent–solvent interactions. In aqueous solution all alkali-metal ions except Li⁺ are sterically unsaturated, having solvent co-ordination numbers n<n _max, the maximum allowed sterically. Such complexes exchange molecules with the solvent more readily than saturated ones and have energy–reaction co-ordinate diagrams in forms that explain the negative B or ΔG ₃ ^Θ (1→1′) values found in aqueous solution. Saturated complexes are the norm in non-aqueous solvents, and the ΔG ₃ ^Θ (1→1′) values are determined mainly by the secondary solvation. Behavior in mixed solvents reflects the transition from aqueous to non-aqueous behavior across the range of solvent composition.     

Three-propeller-blade-shaped electride: remarkable alkali-metal-doped effect on the first hyperpolarizability

Significant alkali-metal-doped effects on the structure and the first hyperpolarizability (β ₀) of effective multi-nitrogen complexant tris[(2-imidazolyl)methyl]amine (TIMA) are investigated. Three imidazoles of TIMA like three blades of propeller connect with methyls by the C–C single bonds. Because of the three C–C single-bond cooperative rotations, the TIMA behaves with great flexibility, and it is a high-performance multi-nitrogen complexant for the alkali metal doping. Thus, the new complexes A_m-TIMA (A_m = Li, Na, and K) with electride characteristic have diffuse excess electron than the reported electride-type system due to the strong interaction between the complexant TIMA and alkali metal. For the first hyperpolarizability, three engaging electrides A_m-TIMA with the diffuse excess electrons exhibit considerably large β ₀ values using the MP2 (full) method and the β ₀ values of new electrides are greatly larger (3,464–29,705 times) than that (338 au) of TIMA. Surprisingly, the K-TIMA sets a new record β ₀ value to be 1.00 × 10⁷ au which far exceeds than that (3,694–76,978 au) of the reported electride-type system Li@calix[4]pyrrole (J Am Chem Soc 127:10977–10981, 2005) and Li_n−H−(CF₂−CH₂)₃−H (n = 1, 2) (J Am Chem Soc 129:2967–2970, 2007) and 31,123 au of the organometallic system (J Am Chem Soc 121:4047–4053, 1999) Ru(trans-4,4′-diethylaminostyryl-2,2′-bipyridine)₃²⁺, as well as 1.23 × 10⁶ au of the large donor-CNT systems (Nano Lett 8:2814–2818, 2008). Clearly, the alkali-metal-doped effect on the first hyperpolarizability is very dramatic for the high-performance multi-nitrogen complexant TIMA. Considering simple possibility from molecule to material, the β ₀ values of optimized Li-TIMA-dimer and Li-TIMA-tetramer are investigated by BHandHLYP method. Interestingly, results show that the order of β ₀ value is Li-TIMA-monomer < Li-TIMA-dimer < Li-TIMA-tetramer. So the new three-propeller-blade-shaped electrides can be considered as candidates for high-performance nonlinear optical materials.     

A Stopped-flow Study on the Kinetics and Mechanism of CO2 Uptake by the cis-[Cr(1,10-phenanthroline)2(OH2)2]3+ Complex Ion

The kinetics of the reaction between gaseous CO₂ and the cis-[Cr(phen)₂(OH₂)₂]³⁺ ion leading to the formation of the carbonato complex ion, have been studied over the pH and temperature ranges: 3 < pH < 6 and 5 < T < 25 °C, respectively, at a constant ionic strength of 1 m (NaClO₄). Investigations were carried out using the stopped-flow spectrophotometry technique in the UV–Vis range: 340–700 nm. The major reactant species in the pH range studied was cis-[Cr(phen)₂(OH)(OH₂)]²⁺ ion, which underwent reaction with CO₂ to form cis-[Cr(phen)₂(OH₂)(HCO₃)]²⁺ ion. Subsequently, slower ring closure of the latter species to form the bidentate carbonato chelate was observed. The possible mechanism has been discussed and the activation parameters ΔH^† and ΔS^† were also determined for the reaction studied.