Correction to: Bis-chelates of nickel(II) and copper(II) with an O,S-donor piperazine ligand

Transition Metal Chemistry - After the publication of this article ‘Bis-chelates of nickel(II) and copper(II) with an O,S-donor piperazine ligand,’ it came to our attention that...     

A new ruthenium complex with an electron-donating aminoindenyl ligand for fast metal-mediated living radical polymerizations

A new ruthenium complex with an electron-donating aminoindenyl ligand induces a fast living radical polymerization of methyl methacrylate (MMA) in the presence of a chloride initiator to give polymers with controlled and variable molecular weights (Mn = 103-105) and very narrow molecular weight distributions (Mw/Mn < 1.1). The structure and high activity of the catalyst were analyzed by X-ray crystallography and cyclic voltammetry in comparison to those of a similar complex with an indenyl ligand.     

7-Deaza-2,8-diazaadenine containing oligonucleotides: synthesis, ring opening and base pairing of 7-halogenated nucleosides

Oligonucleotides containing 7-bromo-7-deaza-2,8-diaza-2′-deoxyadenosine (3) and 5-amino-3-bromo-4-carbamoyl-1-(2′-deoxy-β-d-erythro-pentofuranosyl)pyrazole (4) were synthesized. Compound 3 was prepared from 7-bromo-8-aza-7-deaza-2′-deoxyadenosine (5) via the 1,N⁶-etheno derivative 6 and was converted into the phosphoramidite 11. The 7-bromo substituent of 3 increases oligonucleotide duplex stability compared to the non-halogenated nucleoside. Oligonucleotides incorporating 3 are transformed to those containing 4 during long time deprotection at elevated temperature (25% aq ammonia, 60 °C, 30 h). Compound 3 forms a strong base pair with dG. The base pair stability decreases in the order dG>dT>dA>dC. Similar recognition selectivity is observed for the pyrazole nucleoside 4, however, due to decreased stacking and higher flexibility of the pyrazole moiety, duplexes are less stable than those containing 3.     

Oligonucleotides incorporating 8-aza-7-deazapurines: synthesis and base pairing of nucleosides with nitrogen-8 as a glycosylation position

Oligonucleotides incorporating the unusually linked 8-aza-7-deazapurine N8-(2'-deoxyribonucleosides) 3a,b (purine and 6-amino-2-chloropurine analogues) were used as chemical probes to investigate the base pairing motifs of the universal nucleoside 8-aza-7-deazapurin-6-amine N8-(2'-deoxyribofuranoside) 2 (adenine analogue) and that of the 2,6-diamino compound 1. Owing to the absence of an amino group on the nucleoside 3a the low stability of oligonucleotide duplexes incorporating this compound opposite to the four canonical DNA-constituents indicate hydrogen bonding and base pairing for the universal nucleosides 1 and 2 which form much more stable duplexes. When the 6-amino-2-chloro-8-aza-7-deazapurine nucleoside 3b replaces 1 and is located at the same positions, two sets of duplexes are formed (i) high Tm duplexes with 3b located opposite to dA or dC and (ii) low Tm duplexes with 3b located opposite to dG or dT. These results are due to the steric clash of the 2-chloro substituent of 3b with the 2-oxo group of dT or the 6-oxo group of dG while the 2-halogeno substituents are well accommodated in the base pairs formed with dA or dC. For comparison duplexes incorporating the regularly linked nucleosides 4-6a,b containing the same nucleobases as those of 1-3a,b were studied.     

Bis-olefin-rhodium(I) complexes of a tripod ligand with an O,O,O-donor set

The organometallic anion [(C₅H₅)Co{P(O)(OC₂H₅)₂}₃]⁻ reacts as a tridentate oxygen ligand L⁻ with [{RhCl(diolefin)}₂] (diolefin = 1,5-cyclooctadiene, norbornadiene, tetrafluorobenzobarrelene, trimethyltetrafluorobenzobarrelene, duroquinone) and with [{RhCl(C₂H₄)₂}₂] in hexane or in acetone in the presence of AgClO₄ to give air stable compounds of the type [LRh(diolefin)] and [LRh(C₂H₄)₂]. These novel five-coordinate Rh¹ complexes are fluxional molecules. They have been characterized by elemental analysis, and ¹H NMR, IR and mass spectroscopy.     

1,N-Etheno-2′-deoxytubercidin and pyrrolo-C: synthesis, base pairing, and fluorescence properties of 7-deazapurine nucleosides and oligonucleotides

The synthesis of 1,N⁶-etheno-7-deaza-2′-deoxyadenosine (12b) which was prepared from 7-deaza-2′-deoxyadenosine (5a) with chloroacetaldehyde is described. Also the regioselective glycosylation of the 7-deazapurine-2-one at nitrogen-1 (19) furnishing the pyrrolo-C nucleoside 7a is reported and a side chain derivative with a terminal triple bond (7d) is prepared. The fluorescence properties of these nucleosides and related compounds were determined. The etheno nucleoside 12b is strongly fluorescent showing a Stokes shift of 134 nm and a quantum yield of Φ=0.53. It proved to be stable, both in acidic and in alkaline medium while the parent purine compound 10b is labile under both conditions. Compound 12b was converted into its phosphoramidite 14 and was incorporated into oligonucleotides. Compound 12b destabilizes oligonucleotide duplexes when it is located in the center of the molecule; it stabilizes when it is incorporated in the terminal base pair or acts as an overhanging nucleoside. Temperature-dependent fluorescent measurements yielded sigmoidal melting profiles when compound 12b is stacked to the terminal base pair while a linear decrease of the fluorescence is observed when the molecule is located opposite to the four canonical nucleosides in the center of the duplex.     

New base pairing motifs. The synthesis and thermal stability of oligodeoxynucleotides containing imidazopyridopyrimidine nucleosides with the ability to form four hydrogen bonds

The synthesis and thermal stability of oligodeoxynucleotides (ODNs) containing imidazo[5',4':4,5]pyrido[2,3-d]pyrimidine nucleosides 1-4 (N(N), O(O), N(O), and O(N), respectively) with the aim of developing two sets of new base pairing motifs consisting of four hydrogen bonds (H-bonds) is described. The proposed four tricyclic nucleosides 1-4 were synthesized through the Stille coupling reaction of a 5-iodoimidazole nucleoside with an appropriate 5-stannylpyrimidine derivative, followed by an intramolecular cyclization. These nucleosides were incorporated into ODNs to investigate the H-bonding ability. When one molecule of the tricyclic nucleosides was incorporated into the center of each ODN (ODN I and II, each 17mer), no apparent specificity of base pairing was observed, and all duplexes were less stable than the duplexes containing natural G:C and A:T pairs. On the other hand, when three molecules of the tricyclic nucleosides were consecutively incorporated into the center of each ODN (ODN III and IV, each 17mer), thermal and thermodynamic stabilization of the duplexes due to the specific base pairings was observed. The melting temperature (T(m)) of the duplex containing the N(O):O(N) pairs showed the highest T(m) of 84.0 degrees C, which was 18.2 and 23.5 degrees C higher than that of the duplexes containing G:C and A:T pairs, respectively. This result implies that N(O)and O(N) form base pairs with four H-bonds when they are incorporated into ODNs. The duplex containing N(O):O(N) pairs was markedly stabilized by the assistance of the stacking ability of the imidazopyridopyrimidine bases. Thus, we developed a thermally stable new base pairing motif, which should be useful for the stabilization and regulation of a variety of DNA structures.     

含N,O和S的Schiff碱配体的双核锌配合物的合成与晶体结构

本文合成了具有隔室构造的Schiff碱配体H3L(L^3^-=C11H11N6OS2^3^-), 并对其进行了元素分析, IR, ^1H NMR和MS等项表征。制备了该配体的分别由醋酸根和吡啶分子协配的两种锌的双核配合物, 对后者进行了X射线单晶结构分析。[Zn2L(OH)(py)2](py)2, P21/c, a=0.9195(1), b=2.3334(6), c=1.6111(3)nm,β=93.99(1)°, Z=4。结构用直接法解得, 最终的R=0.066。测定的结果表明,两锌原子间存在酚氧和羟基的两μ2-O-桥, 每个五配位的锌均具有四方锥型的配位构型。     

Mononuclear and polynuclear copper(I) complexes with a new N,N',S-donor ligand and with structural analogies to the copper thionein core

The N,N',S-donor ligand 4-methoxy-3,5-dimethyl-2-((3-(2-(methylthio)phenyl)-1H-pyrazol-1-yl)methyl)pyridine (L) was prepared from 2-(chloromethyl)-4-methoxy-3,5-dimethylpyridine hydrochloride and 3-(2-(methylthio)phenyl)-1H-pyrazole. The Cu(I) complexes [Cu2(L)2CH3CN][Cu(L)CH3CN](BF4)3 (1), [Cu(L)PPh3]BF4 (2), and [Cu6(L)2(C6F5S)6] (3) were prepared and characterized by X-ray crystallography (PPh3=triphenylphosphine, C6F5S-=pentafluorothiophenolate). The unit cell of compound 1 consists of cocrystallized mononuclear and dinuclear entities in which all of the copper atoms exhibit distorted tetrahedral coordination. Compound 2 is monomeric with L bound in the kappa3-N,N',S mode and a PPh3 molecule that completes the coordination environment. Compound 2 presents a fluxional behavior in CDCl3 solution due to the boat inversion of the six-membered N,N' chelate ring (DeltaH=+43.6(3) kJ mol(-1), DeltaS=-16(1) J mol(-1) K(-1)). Crystallization of 3 in acetonitrile leads to a polynuclear structure that contains a CH3CN molecule coordinated to one of the copper atoms: [Cu6(L)2(C6F5S)6CH3CN] (3a). The core of 3a partially resembles a {Cu4S6} adamantane-like moiety, the only difference being that the Cu-NCCH3 interaction leads to the opening of the cluster by disrupting a Cu-Cu interaction. Part of this assembly is found in the yeast metallothionein copper(I)-cysteinate core whose crystal structure has recently been reported. Two additional [Cu(L)]+ peripheral moieties interact with the cluster by means of bridging thiolates. ESI-mass spectrometry, conductivity measurements, and 1H/19F pulsed gradient spin echo (PGSE) NMR experiments suggest that 3a dissociates in acetonitrile solution: 3a+CH3CN-->[Cu4(C6F5S)6]2-+2[Cu(L)CH3CN]+. The stability of the cluster with respect to the hypothetical mononuclear species, [Cu(L)(C6F5S)], is confirmed by DFT calculations (B3LYP), which illustrate the exergonic character of the reaction: 6[Cu(L')(C6H5S)]-->[Cu6(L')2(C6H5S)6]+4L' (DeltaG298=-58.6 kJ mol(-1), where L' and C6H5S- are simplified models for L and C6F5S-, respectively). The energetics pertinent to the ionic dissociation of the cluster in acetonitrile is computed using the polarizable continuum model (PCM) approach.     

Iron(III) complexes with a tripodal N3O ligand containing an internal base as a model for catechol intradiol-cleaving dioxygenases

A bis(mu-alkoxo)-bridged dinuclear iron(III) complex [Fe(L)(NO3)]2(NO3)2 [1; HL = N,N-bis(2-pyridylmethyl)-N-(2-hydroxyethyl)amine] of the tripodal N3O ligand was prepared as a biomimetic model for the intradiol-cleaving dioxygenase enzymes. The reaction of 1 and catechol in the presence of excess triethylamine gave the catecholate (CAT) chelate bis(mu-alkoxo)-bridged dinuclear iron(III) complex [Fe(L)(CAT)]2 (2). The molecular structures of complexes 1 and 2 were determined by X-ray crystallography. Diiron complexes 1 and 2 contain the same bis(mu-alkoxo)diiron diamond core. All heteroatoms (N3O) of the ligand are coordinated to the iron center in complex 1 with two pyridine nitrogen atoms on the axial bonds, while one of the pyridyl arms of the ligand is left uncoordinated in complex 2. The interaction of the diiron complex 1 and 3,5-di-tert-butylcatechol (H2DBC) was investigated by electronic and mass spectroscopy. Complex 1 displays the intradiol-cleaving dioxygenase activity, and the coordinate ethoxyl arm of the ligand is capable of accepting the proton from catechol, which mimics the function of Tyr447 in the protocatechuate 3,4-dioxygenase as an internal base. The spectrophotometric titration experiment indicates the relatively low demand of the external base (0.8 equiv based on Fe(3+)) for attaining the highest dioxygenase activity of complex 1. The reaction rate of the reactive intermediate [Fe(HL)(DBC)]+ with dioxygen is 0.38 M(-1) s(-1) determined by kinetic studies.     

Synthesis, characterization, and X-ray structural analysis of some half-sandwich ruthenium(II) arene complexes with new N,S-donor Schiff base ligands

A series of cationic, half-sandwich ruthenium complexes with the general formula [(η⁶-arene)RuCl(R¹S-C₆H₄-2-CHNR²)]⁺ (arene = p-cymene or hexamethylbenzene; R¹ = CH₂Ph, ⁱPr, or Et; R² = aryl) have been prepared from the reaction of [(η⁶-arene)RuCl₂]₂ with various N,S-donor Schiff base ligands derived from 2-(alkylthio)benzaldehyde and several primary amines. All of the ruthenium complexes were characterized by IR, ¹H NMR, electrochemistry, and UV/Vis spectroscopies. The p-cymene complexes undergo irreversible oxidations while the hexamethylbenzene complexes undergo quasi-reversible oxidations. The molecular structures of ligand 1a and complexes 4a, 4l, and 5e were determined by X-ray crystallography.     

Cysteamine and its homoleptic complexes with group 12 metal ions. Differences in the coordination chemistry of ZnII, CdII, and HgII with a small N,S-donor ligand

2-Ammoniumethanethiolate, (-)SCH(2)CH(2)NH(3)(+), the first structurally characterized zwitterionic ammoniumthiolate, is the stable form of cysteamine (HL) in the solid state and in aqueous solution. Reactions of ZnCl(2), Cd(Oac)(2), and HgCl(2) with cysteamine and NaOH in a 1:2:2 ratio, respectively, lead to the homoleptic complexes ML(2). Their single-crystal X-ray structures demonstrate basic differences in the coordination chemistry of Zn(II), Cd(II), and Hg(II). While chelating N,S-coordination modes are found for all metal ions, Zn(II) forms a mononuclear complex with a distorted tetrahedral Zn(N(2)S(2)) coordination mode, whereas Hg(II) displays a dimer with Hg(N(2)S(2)) coordinated monomers being connected by two long Hg...S contacts. Solid-state (199)Hg NMR spectra of HgL(2) and [Hg(HL)(2)]Cl(2) reveal a low-field shift of the signals with increasing coordination number. Strong and nearly symmetric Cd-S-Cd bridges in solid CdL(2) lead to a chain structure, Cd(II) displaying a distorted square pyramidal Cd(N(2)S(3)) coordination mode. The ab initio [MP2/LANL2DZ(d,f)] structures of isolated ML(2) show a change from a distorted tetrahedral to bisphenoidal coordination mode in the sequence Zn(II)-Cd(II)-Hg(II). A natural bond orbital analysis showed a high ionic character for the M-S bonds and suggests that the S-M-S fragment is best described by a 3c4e bond. The strength of the M...N interactions and the stability of ML(2) toward decomposition to M and L-L decreases in the sequence Zn > Cd > Hg. Ab initio calculations further suggest that a tetrahedral S-M-S angle stabilizes Zn(II) against substitution by Cd(II) and Hg(II) in a M(N(2)S(2)) environment. Such geometry is provided in zinc-finger proteins, as was found by a database survey.     

Synthesis,characterization, crystal structure,catalytic activity in oxidative bromination,and thermal study of a new oxidovanadium Schiff base complex containing O,N-bidentate Schiff base ligand

A new oxidovanadium(IV) Schiff base complex, VOL₂ (1), HL = 2-{(E)-[2- (bromoethyl)imino]methyl}-6-methoxy phenol, containing ethyl bromide pendant group was synthesized by direct reaction of HL and VO(acac)₂ in the ratio of 2 : 1 in methanol at reflux. The Schiff base ligand and its vanadyl complex were characterized by FT-IR spectra and CHN analysis. Additionally, the Schiff base ligand has been characterized by ¹H NMR spectroscopy. The crystal structure of 1 was also determined by single-crystal X-ray analysis, showing the distorted square-pyramidal N₂O₃ coordination around vanadium(IV). The catalytic activity of 1 was studied in the oxidative bromination of 2-nitrophenol as a model substrate, and different reaction parameters were investigated. The oxidative bromination of some organic compounds in the presence of 1 in optimal conditions showed that it was an effective and selective catalyst in those optimal conditions. Thermogravimetric analysis of 1 showed that it decomposed in two stages. 1 was thermally decomposed in air at 660 °C, and the XRD pattern of the obtained solid showed the formation of the V₂O₅ nanoparticles with average size of 34 nm .     

Nickel(II) complex with an asymmetric tetradentate Schiff base ligand: synthesis,characterization, crystal structure,and DFT studies

Abstract

A new asymmetric tetradentate Schiff base, bis(5-methoxysalicylidene)-4-methylbenzene-1,2-diamine), H₂L, and its Ni(II) complex were prepared and characterized using elemental analyses (CHN), FTIR, UV–Vis, ¹H NMR, and ¹³C{¹H} NMR spectroscopic techniques, and crystal structures of both were determined by X-ray crystallography. For both ligand and Ni(II) complex, density functional theory calculations to find geometry parameters, IR frequencies, electronic properties, and natural bond orbital analysis (NBO) were done with M062X method and Def2-TZVP basis set. All calculated data are consistent with the experiments. NBO data for the Ni(II) complex show that the main type of transition in UV-Vis is interligand charge-transfer, which is assigned as π-π*.     

Synthesis, reactivity and structural characterization of ytterbium complexes bearing a tridentate [O,N,N] Schiff base ligand

The synthesis, characterization and reactivity of ytterbium monochloride supported by tridentate Schiff base ligands are described. The metathesis reaction of anhydrous YbCl₃ with 1 equivalent of the sodium salt of a Schiff base, [{LNa(THF)}₂] (1) [LH = 3,5-Bu^t₂-2-(OH)-C₆H₂CHN-8-C₉H₆N], gave the ytterbium Schiff base monochloride complex L₂YbCl (2). Complex 2 reacted with NaOAr (OAr = OC₆H₃Bu^t-2-Me-4) in a 1:1 molar ratio to form the desired aryloxo derivative L₂Yb(OAr) (3). Complex 3 can also be prepared by the one-pot reaction of the Schiff base HL, n-BuLi, YbCl₃ and NaOAr in a 2:2:1:1 molar ratio. However, an unprecedented ytterbium aryloxide LL′Yb(OAr) (4) (L′ = 3,5-Bu^t₂-2-(O)C₆H₂CH(C₄H₉)-NH-8-C₉H₆N) can be isolated in low yield as a byproduct in the later case. Reaction of complex 2 with 1 equivalent of (CH₂CH-CH₂)MgBr in THF afforded the unexpected complex [Mg(H₂N-8-C₉H₆N)Cl(THF)₃]Br (5). Complexes 2-5 were fully characterized by elemental analysis and X-ray diffraction.     

Mitsunobu coupling of nucleobases and alcohols: an efficient, practical synthesis for novel nonsugar carbon nucleosides

A simple facile synthesis of substituted purine derivatives has been developed by using Mitsunobu conditions for an alcohol and a respective nucleobase. A wide range of alcohols produces good to excellent yield (>90%). The resulting purine analogues show good regioselectivity with N-9 substitution as the dominant products in most of the cases. Application of diastereospecific alcohols reveals a complete inversion of the carbon stereogenic center giving a single diastereomer. More than two dozen novel nucleobase derivatives have been prepared in high yield.