The infrared spectrum of solid L-alanine: influence of pH-induced structural changes

The influence of the pH on the infrared spectrum of L-alanine has been analyzed by diffuse reflectance infrared Fourier transform (DRIFT) spectroscopy. The amino acid was precipitated from aqueous solutions and dried at 36.5 degrees C, in order to stabilize cationic L-alanine or alaninium [CH3CH(NH3(+))COOH] at pH 1, the zwitterionic form [CH3CH(NH3(+))COO(-)] at pH 6, and anionic L-alanine or alaninate [CH3CH(NH2)COO(-)] at pH 13. New insight on the specific inter and intramolecular interactions in the different forms of L-alanine was reached by a novel methodological approach: an infrared technique not used before to analyze solid amino acid samples (DRIFTS), in combination with a detailed analysis based on spectral deconvolution. The frequency ranges of interest include the carbonyl/carboxyl stretching and amine deformation modes and the OH/NH stretching modes. It was shown that intermolecular hydrogen bonds between the NH3(+) and COO(-) groups are predominant in the zwitterionic form, whereas in cationic L-alanine, H bonds between the COOH groups are responsible for the formation of dimers. In anionic L-alanine, only strong electrostatic interactions between the COO(-) groups and Na(+) ions are proposed, evidencing the relevant role of the counterion.     

The adsorption of triethylenediamine on Al(2)O(3)-I: a vibrational spectroscopic and desorption kinetic study of surface bonding

The adsorption of triethylenediamine (TEDA) at 300 K is observed to occur via hydrogen bonding to isolated Al-OH groups on the surface of partially dehydroxylated high area gamma-Al(2)O(3) powder. This form of bonding results in +0.3 to +0.4% blue shifts in the CH(2) scissor modes at 1455 cm(-1) and a -0.4% red shift in the CN skeletal mode at 1060 cm(-1), compared to the gas-phase frequencies. Other modes are red shifted less than 0.1%. The isolated OH modes are red shifted by -200 to -1000 cm(-1) due to the strong hydrogen bonding association of Al-OH groups with an N atom in TEDA. Thermal desorption of adsorbed TEDA from the surface occurs in the range 300-700 K. Mass spectral and infrared studies indicate that the decomposition of TEDA occurs on Al(2)O(3) above 725 K, and that C-H bonds are broken, forming adsorbed species with N-H bonds which are stable to 1000 K or above. In contrast to adsorption at 300 K, adsorption of TEDA at 85 K results in the formation of a condensed ice of TEDA, which covers the outer surface of the porous Al(2)O(3) and which does not interact with Al-OH groups inside the porous powder due to immobility.     

Adsorption of enantiomeric and racemic cysteine on a silver electrode--SERS sensitivity to chirality of adsorbed molecules

The adsorption of both (L- and D-) enantiomeric forms of cysteine on the silver electrode surface was studied by surface-enhanced Raman scattering spectroscopy (SERS) as a function of electrode potential and pH value of the solution. It was demonstrated that at potentials more positive than -0.7 V (for pH 3) or -0.8 V (for pH 2 or lower), in acidic environment L-cysteine molecules are adsorbed mainly as P(H) (gauche) conformer, in zwitterionic form with the COO- groups close to the surface. At more negative potentials, NH3+ groups deprotonate at the surface with simultaneous weakening of the interaction of the carboxylic groups with the surface. Spectroscopic evidence for at least partial protonation of the COO- groups at strongly acidic solutions was given by observing the C=O stretching band at frequency lowered by about 30 cm(-1) in comparison with that observed for crystalline cysteine hydrochloride. It points to the considerable enhancement of the strength of hydrogen bonds and may be ascribed to the formation of cyclic L-cysteine dimers at the electrode surface. In neutral and alkaline solutions, adsorbed L-cysteine molecules have deprotonated amino groups at wide potential range. Similar spectroelectrochemical experiments were performed for D-cysteine and for a racemic mixture of D,L-cysteine. As expected, results for D-cysteine were similar to those for L-cysteine. However, for racemic mixture at acidic pH, the spectral effects corresponding to potential-induced transition from adsorbed zwitterions to neutral molecule were considerably smaller. This effect was discussed in terms of stereoselective dimerization of cysteine molecule at the electrode surface.     

Solution and solid-state models of peptide CH...O hydrogen bonds

Fumaramide derivatives were analyzed in solution by (1)H NMR spectroscopy and in the solid state by X-ray crystallography in order to characterize the formation of CH...O interactions under each condition and to thereby serve as models for these interactions in peptide and protein structure. Solutions of fumaramides at 10 mM in CDCl(3) were titrated with DMSO-d(6), resulting in chemical shifts that moved downfield for the CH groups thought to participate in CH...O=S(CD(3))(2) hydrogen bonds concurrent with NH...O=S(CD(3))(2) hydrogen bonding. In this model, nonparticipating CH groups under the same conditions showed no significant change in chemical shifts between 0.0 and 1.0 M DMSO-d(6) and then moved upfield at higher DMSO-d(6) concentrations. At concentrations above 1.0 M DMSO-d(6), the directed CH...O=S(CD(3))(2) hydrogen bonds provide protection from random DMSO-d(6) contact and prevent the chemical shifts for participating CH groups from moving upfield beyond the original value observed in CDCl(3). X-ray crystal structures identified CH...O=C hydrogen bonds alongside intermolecular NH...O=C hydrogen bonding, a result that supports the solution (1)H NMR spectroscopy results. The solution and solid-state data therefore both provide evidence for the presence of CH...O hydrogen bonds formed concurrent with NH...O hydrogen bonding in these structures. The CH...O=C hydrogen bonds in the X-ray crystal structures are similar to those described for antiparallel beta-sheet structure observed in protein X-ray crystal structures.     

SYNTHESES AND ADSORPTION PROPERTIES OF PHENOL-FORMALDEHYDE-TYPE CHELATING RESINS BEARING THE FUNCTIONAL GROUP OF TARTARIC ACID

Several kinds of novel chelating resins bearing the functional group of tartaric acid (TTA-FQ-12, TTA-FQ-23, and TTA-FQ-34) were synthesized by reacting epoxy maleic anhydride, which was prepared through the oxidization reaction of maleic anhydride by hydrogen peroxide, with phenol-formaldehyde resin containing polyamine (FQ resins series). The effects of such factors as reaction time, reaction temperature and pH value on the loading capacity of TTA in resins were investigated. The results showed that the optimum reaction conditions are as follows: time 9-12h; temperature 90-105℃;pH value 6-10. The loading capacities of TTA can reach 0.15, 0.14, and 0.11 mmol/g^-1 when the functional group of FQ resin was -OCH2CH2NHC2H4NH2, -O(CH2CH2NH)2C2H4NH2 and -O(CH2CH2NH)3C2H4NH2), respectively. The structures of resins were characterized by FTIR spectra. The primary study on the adsorption properties of the resins for metal ions showed that there are two kinds of adsorption mechanisms i.e. ion exchange and chelate in the adsorption process. TTA-FQ resins have much higher adsorption selectivity for Pb^2 and Zn^2 than for Cu^2 and Ni^2 . These resins can probably be used for separating Pb^2 or Zn^2 in the mixture of metal ions or for treating wastewater containing heavy metal ions.     

Origin of nonlocal interactions in adsorption of polar molecules on Si(001)-2 x 1

Using density functional theory slab calculations, we have investigated (i) the origin of nonlocal interactions occurring in the adsorption of small polar molecules (H2O,NH3,CH3OH,CH3NH2) on the clean Si(001)-2 x 1 surface and (ii) the nonlocal effects on two-dimensional arrangement of adsorbates. Our results show the adsorption properties are significantly altered in the presence of adsorbates on an adjacent dimer along a row. We have identified that the coverage dependent behavior arises from a combination of (i) surface polarization change, (ii) adsorbate-induced charge delocalization, (iii) adsorbate-adsorbate repulsion, and (iv) hydrogen bonding. The nucleophilic-electrophilic molecular adsorption involves charge delocalization to neighboring dimers along a row, which in turn undermines molecular adsorption on the neighboring dimers. Nonlocal effects associated with polar interactions with neighboring dimers and adsorbates vary with adsorption system. While such polar interactions are unimportant in CH3OH adsorption, hydrogen bonding and adsorbate-adsorbate repulsion play an important role in determining the adsorption structures of H2O and NH3CH3NH2, respectively. In addition, the electrostatic attraction with the buckled-up Si atoms of adjacent dimers contributes to stabilization of H2O, NH3, and CH3NH2 adsorption. We also discuss kinetic effects on two-dimensional ordering of adsorbates, in conjunction with surface phase transition and adsorption-dissociation rates.     

磺化木质素系聚合物的结构及其在氧化铝上的吸附特性

以造纸黑液中的碱木质素为主要原料,通过磺化和缩聚反应制备了磺化木质素高分子聚合物SBAL.TEM和1H-NMR测试结果表明SBAL是以木质素的疏水骨架为中心,以磺酸基和羧基组成亲水性侧链的球形结构.GPC测试结果表明其重均分子量达到了24880 Da,是碱木质素的7.38倍,电位滴定测试结果表明,其磺化度达到2.70 mmol.g-1.通过流变曲线、吸附等温线、zeta电位、XPS测试研究了其对氧化铝在水中的分散机理及其吸附特性.掺SBAL的氧化铝浆体,在pH=3～12范围内SBAL对其具有良好的分散降黏作用.溶液pH对SBAL的分子构型和吸附特性有较大的影响,随pH增加,SBAL中磺酸基、羧基和酚羟基逐渐电离,分子的伸展程度逐渐增大.随pH增加,SBAL在氧化铝上的吸附质量减少,吸附层由致密逐渐变得疏松,pH小于等电点时以静电吸附为主,pH大于等电点时以非静电的特性吸附为主.当SBAL的用量小于临界值(0.5 wt%)时,其在氧化铝表面形成单分子层吸附,在颗粒间起到静电排斥作用;当用量大于临界值时,其在颗粒表面形成聚集体吸附而起到空间位阻作用.     

Deuterium isotope effect on 13C chemical shifts of tetrabutylammonium salts of Schiff bases amino acids

Deuterium isotope effects on 13C chemical shift of tetrabutylammonium salts of Schiff bases, derivatives of amino acids (glycine, L-alanine, L-phenylalanine, L-valine, L-leucine, L-isoleucine and L-methionine) and various ortho-hydroxyaldehydes in CDCl3 have been measured. The results have shown that the tetrabutylammonium salts of the Schiff bases amino acids, being derivatives of 2-hydroxynaphthaldehyde and 3,5-dibromosalicylaldehyde, exist in the NH-form, while in the derivatives of salicylaldehyde and 5-bromosalicylaldehyde a proton transfer takes place. The interactions between COO- and NH groups stabilize the proton-transferred form through a bifurcated intramolecular hydrogen bond.     

Selective Carbon Dioxide Capture in Antifouling Indole-based Microporous Organic Polymers

Intermolecular synergistic adsorption of indole and carbonyl groups induced by intermolecular hydrogen bonding makes microporous organic polymer(PTICBL)exhibit high CO2 uptake capacity(5.3 mmol·g^-1at 273 K)and selectivities(CO2/CH4=53,CO2/N2=107 at 273 K).In addition,we find that indole units in the PTICBL networks inhibit the attachment of bacteria(E.coil and S.aureus)on the surface of PTICBL and extend its service life in CO2 capture.     

Solution and solid-state spectra of quinacridone derivatives as viewed from the intermolecular hydrogen bond

Quinacridones are industrially important hydrogen-bonded pigments. The color in the solid state is vivid red, while it is pale yellow in solution, indicating evidently the involvement of intermolecular interactions in the solid state. The electronic structure has therefore been investigated with special attention to the role of intermolecular NH...O hydrogen bonds for three representative quinacridone compounds with different hydrogen-bond forming characteristics: unsubstituted gamma-quinacridone (gamma-QA) with two NH groups, mono-N-methylquinacridone (MMQA) with one NH and one CH(3), and N,N'-dimethyl-quinacridone (DMQA) with two CH(3) groups. The number of the NH...O hydrogen bonds per molecule is four, two, and zero for gamma-QA, MMQA, and DMQA, respectively. In solution, no significant difference in absorption maximum is recognized between gamma-QA, MMQA, and DMQA. However, in the solid state, the absorption maximum of gamma-QA appears at the longest wavelength, followed by MMQA and then DMQA, depending on the number of NH...O intermolecular hydrogen bonds. The role of the hydrogen bond is found to align transition dipoles in a "head-to-tail" fashion and to displace the absorption band toward longer wavelengths due to excitonic interactions. The extent of the spectral shift increases with increasing number of hydrogen bonds per molecule.     

Influence of anions on the adsorption kinetics of salicylate onto alpha-alumina in aqueous medium

The adsorption kinetics of salicylate on alpha-alumina surfaces were studied at 25 degrees C and pH 6 in the presence of 0.05 mM concentration of different anions (Cl(-), Br(-), I(-), SCN(-), HCOO(-), CH(3)COO(-), S(2)O(2-)(3), CO(2-)(3), and SO(2-)(4)) as a function of time. The experimental data were significantly better fitted to a pseudo-second-order kinetics equation of nonlinear form in the entire time duration and are in excellent agreement with corresponding estimated values. Considering adsorption data for salicylate in the presence of Cl(-) as the face value, all the monovalent anions (Br(-), I(-), SCN(-), HCOO(-), CH(3)COO(-)) promote the adsorption of salicylate onto alpha-alumina surfaces while the divalent anions (S(2)O(2-)(3), CO(2-)(3), and SO(2-)(4)) have the reverse effect under similar conditions. DRIFT spectra of alpha-alumina treated with salicylate reveal that the symmetric peak nu(s)(COO(-)) is shifted by approximately 40 cm(-1) to a lower wavelength region, which implies that salicylate forms an inner-sphere complex with alpha-alumina surface in the presence of both mono- and divalent anions.     

Adsorption and surface complexation of trimesic acid at the alpha-alumina-electrolyte interface

Adsorption kinetics, adsorption isotherms and surface complexation of trimesic acid onto alpha-alumina surfaces were investigated. Adsorption kinetics of trimesic acid with an initial concentration of 0.5 mM onto alpha-alumina surfaces were carried out in batch method in presence of 0.05 mM NaCl (aq) at pH 6 and 298.15, 303.15 and 313.15 K. Adsorption isotherms were carried out at 298.15 K, pH 5-9, and 0.05 mM NaCl (aq) by varying trimesic acid concentration from 0.01 to 0.6 mM. Three kinetics equations such as pseudo-first-order, pseudo-second-order and Ho equations were used to estimate the kinetics parameters of the adsorption of trimesic acid on the alpha-alumina surfaces. Ho equation fits the experimental kinetics data significantly better and the estimated equilibrium concentration is in excellent agreement with the experimental value. The adsorption data were fitted to Freundlich and Langmuir adsorption model and the later best fits the adsorption isotherms. Comparison of adsorption density of trimesic acid with that of benzoic and phthalic acids follows the sequence: benzoic acid < trimesic acid < phthalic acid. The negative activation energy and the Gibbs free energy for adsorption indicate that the adsorption of trimesic acid onto alpha-alumina is spontaneous and facile. DRIFT spectroscopic studies reveal that trimesate forms outer-sphere complexes with the surface hydroxyl groups that are generated onto alpha-alumina surfaces in the pH range of the study.     

The adsorption of triethylenediamine on Al(2)O(3)-II: hydrogen bonding to Al-OH groups

The hydrogen bonding of the triethylenediamine (TEDA) molecule to isolated Al-OH groups on partially dehydroxylated high area gamma-Al(2)O(3) powder has been studied using transmission IR spectroscopy. It has been found that TEDA adsorbs both singly and as multiple species to single Al-OH groups in clearly separable equilibrium stages of adsorption at 300 K. The reversible adsorption of a single TEDA molecule to Al-OH fits the Langmuir adsorption isotherm well, and the enthalpy of adsorption is found to be -15.6 +/- 0.5 kJ mol(-1) in the range of fractional coverage of 0.5-0.6. Red shifts of the Al-OH frequency from approximately -200 cm(-1) to approximately -1000 cm(-1) are observed as a result of -OH bonding to the N lone pair in the TEDA molecule.     

A comprehensive conformational analysis of tryptophan,its ionic and dimeric forms

Tryptophan is an essential amino acid, and understanding the conformational preferences of monomer and dimer is a subject of outstanding relevance in biological systems. An exhaustive first principles investigation of tryptophan ( W ) and its ionized counterparts cations (WC) , anions (WA) , and zwitterions (WZ) has been carried out. A comprehensive and systematic study of tryptophan dimer (WD) conformations resulted in about 62 distinct minima on the potential energy surface. The hydrogen bonds and a variety of noncovalent interactions such as OH‐π, NH‐π, CH‐π, CH‐O, and π‐π interactions stabilized different forms of tryptophan and its dimers. Over all in monomeric conformers which have NH‐O, hydrogen bonds showed higher stability than other conformers. A cursory analysis reveal that the most stable dimers stabilized by hydrogen bonding interactions while the less stable dimers showed aromatic side chain interactions. Protein Data Bank analysis of tryptophan dimers reveals that at a larger distance greater than 5 Å, T‐shaped orientations (CH‐π interactions) are more prevalent, while stacked orientations (π‐π interactions) are predominant at a smaller distance. © 2013 Wiley Periodicals, Inc.     

Surface functionalized titanium thin films: zeta-potential, protein adsorption and cell proliferation

The relationship between electric charge at a material surface and protein adsorption is essential to understand the mechanism of biological integration of materials with tissues. This study investigated the influence of titanium thin films' surface chemistry and surface electric charge (zeta-potential) properties on protein adsorption and cell proliferation. Titanium thin films were surface functionalized with different functional end groups, such as -CH=CH2, -NH2 and -COOH groups in order to produce surfaces with a variety of electric charge properties. The chemical compositions, electric charges and wettability were investigated by using X-ray photoelectron spectroscopy (XPS), zeta-potential measurements and water contact angle measurements, respectively. XPS revealed the surface functionalization of titanium films with -CH=CH2, -NH2, and -COOH groups, which were converted from -CH=CH2 groups. Ti-COOH samples showed the lowest water contact angles and zeta-potential compared to all other samples investigated in this study. NH2-terminated titanium films displayed intermediate contact angles of 70.3+/-2.5 degrees . Fibrinogen adsorption on titanium films and surface functionalized titanium films were investigated in this study. Ti-COOH samples displayed a lower protein adsorption than all other groups, such as NH2-, -CH=CH2-terminated titanium thin films. A tendency that the lower zeta-potential of the samples, the lower the protein adsorption at their surfaces was observed. In vitro cell proliferation tests were also performed on the different surface functionalized titanium films. NH2-terminated titanium films displayed good cell proliferation and cell viability tendency. However, a lower cell proliferation on COOH-terminated titanium films was observed compared with NH2-terminated titanium films. This effect was attributed to the difference in protein adsorption of these samples.     

Indirect adsorbate-adsorbate interactions mediated through the surface electronic structure of the Si(100) surface

Indirect adsorbate-adsorbate interactions between adsorbed ammonia (NH3) molecules on the Si(100) surface are investigated using density functional theory. Two different nonlocal effects mediated through the surface electronic structure are observed: "poisoning" and hydrogen bonding. We find that adsorbed NH3 "poisons" adsorption of NH3 on neighboring Si dimers on the same side of the dimer row whereas neighboring NH2(a) groups favor this configuration. Adsorption of NH3 involves charge transfer to the surface that localizes on neighboring Si dimer atoms, preventing adsorption of NH3 at these sites. These indirect interactions are similar to Friedel-type interactions observed on metal surfaces with an estimated range of less than 7.8 A on the Si(100) surface. These interactions may be manipulated to construct local ordering of the adsorbates on the surface.     

Kinetics and adsorption behavior of carboxymethyl starch on alpha-alumina in aqueous medium

The adsorption of carboxymethyl starch (CMS) at the alpha-alumina/aqueous solution interface has been investigated through adsorption studies, electrokinetics mobility measurements, and FTIR spectroscopy. Zeta potential measurements show that the addition of CMS results in a more dramatic increase in the absolute zeta potential in the alkaline region, as well as a shift of the isoelectric point to lower values, indicating the adsorption of CMS from the aqueous solution onto the alumina surface. The positive hydrophilic surface sites of alumina are responsible for the adsorption of CMS molecules. The adsorption of CMS is possible after charge reversal by the addition of excess CMS. Nearly 30 min of contact time are found to be sufficient for the adsorption of CMS to reach equilibrium. CMS adsorption follows a Langmuir isotherm with adsorption capacities of 91.74 mg CMS per gram of alpha-alumina. For the adsorption of CMS, pseudo-second-order chemical reaction kinetics provides the best correlation with the experimental data. FTIR analysis indicated that CMS forms outer complexes with alumina surfaces depending on the shifting of the asymmetric and symmetric bands.     

高岭石/甲酰胺插层的Raman和DRIFT光谱

用Raman和漫反射红外光谱研究高岭石/甲酰胺插层反应机理及插层作用对高岭石微结构的影响.     

An investigation of gold adsorption from a binary mixture with selective mesoporous silica adsorbents

Gold-selective adsorbents were prepared from mesoporous MCM-41 silica by grafting organic amine groups (i.e., RNH2, R2NH, and R3N; R=propyl). NH2-MCM-41, NRH-MCM-41, and NR2-MCM-41 displayed strong affinity for gold and at 1 mmol/g loading adsorbed 0.40, 0.33, and 0.20 mmol/g of gold. Copper and nickel were not adsorbed on these adsorbents. Grafting surface chemical moieties introduces heterogeneity on an otherwise uniform MCM-41 pore surface and metal adsorption is best described by the Freundlich adsorption model. A series of binary adsorption equilibrium studies with NH2-MCM-41 containing 2.2 mmol RNH2/g shows that NH2-MCM-41 adsorbs only gold from solutions containing copper and nickel with an adsorption capacity of 0.6 mol of Au/mol of RNH2 (1.1 mmol of Au/g of NH2-MCM-41). Copper and nickel were not adsorbed by NH2-MCM-41 regardless of the solution concentration, composition, and pH (i.e., 2 to 4) in the presence of gold. The LeVan and Vermeulen adsorption model based on a single component Freundlich isotherm and corrected for the anion effect accurately predicted the binary adsorptions. The adsorbed gold was completely recovered by a simple acid wash and the recovered gold solution is 99% pure. The regenerated NH2-MCM-41 remained 100% selective for gold removal and exhibited the same adsorption capacity even after several uses.     

Structural characterisation of trimethylsilyl-protected DNA bases

The structures of the silylated DNA bases, bis(trimethylsilyl)thymine (1), bis(trimethylsilyl)cytosine (2), bis(trimethylsilyl)adenine (3) and tris(trimethylsilyl)guanine (4), have been determined. 1 is O-silylated and displays no intermolecular interactions. 2 is silylated at both exocylic O, N positions and forms a chain structure through intermolecular NH…O and NH…N hydrogen bonds. 3 contains two SiMe₃ groups, on the exocylic NH and endocyclic N⁹ position, respectively; of two independent molecules in the asymmetric unit, one dimerises through complementary NH…N hydrogen bonds, while the other forms a strained intramolecular hydrogen bond through the same pair of donor and acceptor centres. 4 incorporates N, N, O–SiMe₃ moieties and forms chains via bifurcated CH…O/N hydrogen bonds, while the NH function remains unexploited. The effects of silylation on these pyrimidine and purine ring structures are also discussed in comparison with the native bases.

The structures of the silylated DNA bases, bis-(trimethylsilyl)thymine (1), bis-(trimethylsilyl)cytosine (2), bis-(trimethylsilyl)adenine (3) and tris-(trimethylsilyl)guanine (4), have been determined. While 1 displays no intermolecular interactions. 2 forms a chain structure through intermolecular NH…O and NH…N hydrogen bonds, 3 incorporates two independent molecules in the asymmetric unit, one dimerises through complementary NH…N hydrogen bonds while the other forms a strained intramolecular hydrogen bond through the same pair of donor and acceptor centres and 4 forms chains via bifurcated CH…O/N hydrogen bonds while the NH function remains unexploited.