Single crystals of L-O-serine phosphate X-irradiated at low temperatures: EPR, ENDOR, EIE, and DFT studies

Single crystals of the phosphorylated amino acid L-O-serine phosphate were X-irradiated and studied at 10 K and at 77 K using EPR, ENDOR, and EIE techniques. Two radicals, R1(10 K) and R1(77 K), were detected and characterized as two different geometrical conformations of the protonated reduction product >CH-C(OH)(2). R1(10 K) is only observed after irradiation at 10 K, and upon heating to 40 K, R1(10 K) transforms rapidly and irreversibly into R1(77 K). The transition from R1(10 K) to R1(77 K) strongly increases the isotropic hyperfine coupling of the C-CH(beta) coupling (Delta = 32 MHz) and the major C-OH(beta) coupling (Delta = 47 MHz), in sharp contrast to the their much reduced anisotropic hyperfine couplings after the transition. An umbrella-like inversion of the carboxylic acid center, accompanied by minor geometrical adjustments, explains the changes of these observed isotropic and anisotropic couplings. DFT calculations were done on the reduced and protonated L-O-serine phosphate radical at the B3LYP/6-311+G(2df,p)//B3LYP/6-31+G(d) level of theory in order to support the experimental observations. Two different conformations of the anion radical, related by an inversion at the carboxylic center, could be found within the single molecule partial energy-optimization scheme. These two conformations reproduce the experimental hyperfine couplings from radicals R1(10 K) and R1(77 K). A third radical, radical R2, was observed experimentally at both 10 and 77 K and was shown to be due to the decarboxylated L-O-serine phosphate oxidation product, a conclusion fully supported from the DFT calculations. Upon thermal annealing from 77 to 295 K, radicals R1(77 K) and R2 disappeared and all three previously observed room-temperature radicals could be observed. No phosphate-centered radicals could be observed at any temperatures, indicating that the phosphate-ester bond break for one of the room-temperature radicals does not occur by dissociative electron capture at the phosphate group.     

Combined electron magnetic resonance and density functional theory study of 10 K X-irradiated beta-D-fructose single crystals

Primary free radical formations in fructose single crystals X-irradiated at 10 K were investigated at the same temperature using X-band Electron Paramagnetic Resonance (EPR), Electron Nuclear Double Resonance (ENDOR) and ENDOR induced EPR (EIE) techniques. ENDOR angular variations in the three principal crystallographic planes and a fourth skewed plane allowed the unambiguous determination of five proton hyperfine coupling tensors. From the EIE studies, these hyperfine interactions were assigned to three different radicals, labeled T1, T1* and T2. For the T1 and T1* radicals, the close similarity in hyperfine coupling tensors suggests that they are due to the same type of radical stabilized in two slightly different geometrical conformations. Periodic density functional theory calculations were used to aid the identification of the structure of the radiation-induced radicals. For the T1/T1* radicals a C3 centered hydroxyalkyl radical model formed by a net H abstraction is proposed. The T2 radical is proposed to be a C5 centered hydroxyalkyl radical, formed by a net hydrogen abstraction. For both radicals, a very good agreement between calculated and experimental hyperfine coupling tensors was obtained.     

EPR and ENDOR study of radiation-induced radical formation in purines: sodium inosine crystals X-irradiated at 10 K

X-irradiated single crystals of sodium inosine (Na(+)*Inosine(-)*2.5H(2)O), in which the hypoxanthine base is present as the N1-deprotonated anion, were investigated using K-band (24 GHz) electron paramagnetic resonance (EPR), electron-nuclear double resonance (ENDOR), and ENDOR induced EPR (EIE) techniques at 10 K. At least five different radicals were present immediately after irradiation at 10 K. R1, which decayed upon warming the crystals to 50 K, was identified as the electron-loss product of the parent N1-deprotonated hypoxanthine base. Hyperfine couplings to HC8 and HC2 were fully characterized with ENDOR spectroscopy, and the identification was supported by DFT calculations. R2, which also decayed on warming to 50 K, exhibited nearly equal couplings to HC2 and HC8. Taken in combination with an extensive set of DFT calculations, the experimental results indicate that R2 is the (doubly negative) product of electron-gain by the initially anionic N1-deprotonated hypoxanthine parent. R3, which exhibited hyperfine coupling only to HC8 could not be identified. R4, which persisted on annealing to 260 K, exhibited one large alpha-proton hyperfine coupling which was fully characterized by ENDOR. Based on DFT calculations and the experimental data, R4 was identified as the product of net H-abstraction from C5'. The remaining HC5' was the source of the measured alpha-proton coupling. R5, present at low temperature and the only observable radical after warming the crystals to room temperature, was identified as the C8-H addition radical. The alpha-coupling to HC2 and beta-couplings to the pair of C8 methlyene protons were fully characterized by ENDOR.     

Free radical products in X-irradiated Rochelle salt: low temperature ENDOR and DFT studies

Single crystals of Rochelle salt, [⁻OOC-CHOH-CHOH-COO⁻, Na⁺, K⁺]·4H₂O, X-irradiated at 10 K, have been examined using EPR, ENDOR and EIE spectroscopic techniques to characterize the radiation induced radicals stable at that temperature and their reactions upon warming. The one-electron gain product was observed and from the hyperfine interaction with a β-proton it was unambiguously centered at the C₄ position of the tartrate moiety. An additional nearly isotropic hyperfine structure of about 21 MHz was tentatively assigned to interaction with a sodium ion exhibiting a close contact to O₃ in the crystal. Evidence was obtained that the one-electron reduced radical had become protonated at one of the C₄ bonded carboxyl oxygens, most probably O₄. No evidence for the corresponding C₁-centered reduction product was found. Two resonance lines (R2, A1) were shown by EIE to belong to a species formed by decarboxylation at C₃, a secondary oxidation product. Two other resonance lines (K1, K2) were assigned to two varieties of another decarboxylation radical, centered at C₂, distinguished by differences in the potassium ion coordination. Furthermore, one other resonance line (A2) was tentatively ascribed to a third decarboxylation radical, centered at the opposite end of the tartrate moiety. The precursor of these products, that is, the one-electron loss product, was not observed after X-irradiation at 10 K. Thermally induced free radical reactions followed by EPR in the temperature range of 12-119 K indicate that a water molecule or a hydroxyl ion is eliminated from the one-electron reduction product radical and that a C₃-centered radical is formed. The reduction and oxidation reaction pathways of hydroxy acid derivatives are discussed.     

EPR and ENDOR study of radiation-induced radical formation in purines: hypoxanthine hydrochloride monohydrate crystals X-irradiated at 10 K

Electron paramagnetic resonance (EPR) and electron-nuclear double resonance (ENDOR) study of hypoxanthine.HCl.H(2)O crystals irradiated at low temperatures (10 K) identified three radical species. In these crystals, the parent molecules exist in a cationic form with a proton at N7. R1 was the product of net hydrogen addition to N3 and exhibited alpha-proton hyperfine couplings to HC2, HN1, HC8, and HN3. The coupling to HC2 has an isotropic component smaller than usual, evidently an indication that the bonds to C2 are nonplanar. R2 was the product of net hydrogen loss from N7, equivalent to the one-electron oxidation product of neutral hypoxanthine, and exhibited alpha-proton hyperfine couplings to HC2 and HC8. Both couplings are characteristic of planar bonding arrangements at the centers of spin. R3 was provisionally identified as the product of net hydrogen addition to O6 and exhibited hyperfine alpha-proton couplings to HC8 and NH1. To identify the set of radicals, the experiments employed four crystal types: normal, deuterated only at NH positions, deuterated at HC8 and NH positions, and deuterated at HC8 only. The low-temperature data also showed clear evidence for H/D isotope effects in formation and/or stabilization of all radicals. To aid and support the identifications, the experimental results were compared to DFT calculations performed on a variety of radical structures plausible for the parent molecule and molecular packing within the crystal.     

Electron transfer in amino acid.nucleic acid base complexes: EPR, ENDOR, and DFT study of X-irradiated N-formylglycine.cytosine complex crystals

Single crystals of the 1:1 complex of the nucleic acid base cytosine and the dipeptide N-formylglycine (C.NFG) have been irradiated at 10 and 273 K to doses of about 70 kGy and studied at temperatures between 10 and 293 K using 24 GHz (K-band) and 9.5 GHz (X-band) electron paramagnetic resonance (EPR), electron nuclear double resonance (ENDOR), and ENDOR-induced EPR (EIE) spectroscopy. In this complex, the cytosine base is hydrogen bonded at positions N3 and N4 to the carboxylic group of the dipeptide, and the N3 position of cytosine has become protonated by the carboxylic group. At 10 K, two major radicals were characterized and identified. One of these (R1) is ascribed to the decarboxylated N-formylglycine one-electron oxidized species. The other (R2) is the N3-protonated cytosine one-electron reduced species. A third minority species (R3) appears to be a different conformation or protonation state of the one-electron reduced cytosine radical. Upon warming, the R2 and R3 radicals decay at about 100 K, and at 295 K, the only cytosine-centered radicals present are the C5 and C6 H-addition radicals (R5, R6). The R1 radical decays at about 150 K, and a glycine backbone radical (R4) grows in slowly. Thus, in the complex, a complete separation of initial oxidation and reduction events occurs, with oxidation localized at the dipeptide moiety, whereas reduction occurs at the nucleic acid base moiety. DFT calculations indicate that this separation is driven by large differences in electron affinities and ionization potentials between the two constituents of the complex. Once the initial oxidation and reduction products are trapped, no further electron transfer between the two constituents of the complex takes place.     

Mechanism of low temperature decomposition of NiO single crystals

The decomposition of NiO single crystal was investigated under dissociative conditions in the temperature interval between 330 and 850 °C in the absence of reducing gas species. An unusually fast and constant decomposition rate was measured at the lowest temperatures, coupled with an unusual largely porous microstructure of the metallic product layer. This anomalous high reaction rate was interpreted on the basis of a decomposition mechanism implying the dissociative vaporization of the oxide followed by the condensation of the metal. The proposed mechanism is supported by the microstructure of the product and of the reacting interface. The complex dependence of reaction rate from temperature was shown to be related to a collapse of the porous product to form a compact metal layer at higher temperatures due to sintering.     

EPR and ENDOR study of the frozen ammoniated electron at low alkali-metal concentrations

Ammoniated electrons in dilute frozen solutions are examined using EPR spectroscopy under conditions where the formation of metallic nanoparticles is avoided. Two signals from two different species have been observed. One signal is metastable and decays irreversibly upon annealing. The metastable species saturates at a spin concentration of 10 nM. The annealing temperature for this species amounts to 60 K for frozen solutions of sodium in neat ammonia and is raised upon addition of metal iodide. The observed g value is smaller than the free electron g value and is compatible with a cluster-anion radical rather than with a cavity electron. The wave function of the unpaired electron contains about 6%-10% of 2p character at nitrogen. The observed g shift is fully compatible with previously reported theoretical calculations (Shkrob, I. A. J. Phys. Chem. A 2006, 110, 3967-3976). The second signal cannot be annealed in the frozen state. The line shape is homogeneous, and its width depends on the identity of the metal and at large metal concentrations on the metal concentration itself. Upon increasing alkali metal concentration above 0.15 MPM, the line shape changes from Lorentzian to Dysonian, indicating the presence of metal nanoparticles. A new ENDOR pulse sequence is introduced to investigate the presence of weakly coupled nuclear spins for homogeneous EPR lines. The observations are critically compared with available literature data.     

EPR/ENDOR study of an X-irradiated single crystal of: 1-triphenylphosphoranylidene-2-propanone: The role of hydrogen bonds in the trapping of radiogenic radicals

As shown from the crystal structure, the oxygen atom of Ph₃P=CH---C(O)CH₃ forms both intra and intermolecular hydrogen bonds. X-irradiation of this compounds produces a room-temperature-stable radical which was studied by single crystal EPR/ENDOR spectroscopy. Comparison of the experimental hyperfine couplings with those obtained from ab initio calculations shows that the radical cation Ph₃P⁺---CH=C(OH)CH₂ is formed under radiolysis. The principal directions of the hyperfine tensors indicate that, in this process, some of the hydrogen bonds are broken and that the radical undergoes a drastic reorientation around the Ph₃P---C bond.     

X- and W-band EPR and Q-band ENDOR studies of the flavin radical in the Na+ -translocating NADH:quinone oxidoreductase from Vibrio cholerae

Na(+)-NQR is the entry point for electrons into the respiratory chain of Vibrio cholerae. It oxidizes NADH, reduces ubiquinone, and uses the free energy of this redox reaction to translocate sodium across the cell membrane. The enzyme is a membrane complex of six subunits that accommodates a 2Fe-2S center and several flavins. Both the oxidized and reduced forms of Na(+)-NQR exhibit a radical EPR signal. Here, we present EPR and ENDOR data that demonstrate that, in both forms of the enzyme, the radical is a flavin semiquinone. In the oxidized enzyme, the radical is a neutral flavin, but in the reduced enzyme the radical is an anionic flavin, where N(5) is deprotonated. By combining results of ENDOR and multifrequency continuous wave EPR, we have made an essentially complete determination of the g-matrix and all major nitrogen and proton hyperfine matrices. From careful analysis of the W-band data, the full g-matrix of a flavin radical has been determined. For the neutral radical, the g-matrix has significant rhombic character, but this is significantly decreased in the anionic radical. The out-of-plane component of the g-matrix and the nitrogen hyperfine matrices are found to be noncoincident as a result of puckering of the pyrazine ring. Two possible assignments of the radical signals are considered. The neutral and anionic forms of the radical may each arise from a different flavin cofactor, one of which is converted from semiquinone to flavohydroquinone, while the other goes from flavoquinone to semiquinone, at almost exactly the same redox potential, during reduction of the enzyme. Alternatively, both forms of the radical signal may arise from a single, extremely stable, flavin semiquinone, which becomes deprotonated upon reduction of the enzyme.     

EPR and ENDOR study of thermally produced triphenylmethyl radicals

The ENDOR spectrum of the triphenylmethyl radical formed by heat treatment of triphenylmethane has been measured in solution at 131°C. The derived hyperfine coupling constants of 2.770, 2.556 and 1.138 G were used to simulate the extremely well resolved EPR spectrum. These coupling constants are in good agreement with spin densities determined for the planar radical by the McLachlan method.     

Q-band EPR spectroscopy of photogenerated quartet state organic nitreno radicals

Q-band 34 GHz EPR spectra are reported for quartet state 2-(para-nitrenophenyl)-4,4,5,5-tetramethyl-4,5-dihydro-1H-imidazole-3-oxide-1-oxyl and 3-(para-nitrenophenyl)-1,5,6-triphenylverdazyl reactive intermediates generated from the corresponding azido precursors under frozen matrix photochemical conditions, in situ in a Q-band resonator. Comparison of the Q-band spectra to those generated under conventional X-band (9-10 GHz) conditions shows the much superior resolution of transitions in the g > 2 region of the former. Spectral transitions assigned by line shape simulation yield the zero field splittings for the nitreno-radical species.     

Identification of primary free radicals in trehalose dihydrate single crystals X-irradiated at 10 K

Primary free radical formation in trehalose dihydrate single crystals X-irradiated at 10 K was investigated at the same temperature using X-band Electron Paramagnetic Resonance (EPR), Electron Nuclear Double Resonance (ENDOR) and ENDOR-induced EPR (EIE) techniques. The ENDOR results allowed the unambiguous determination of six proton hyperfine coupling (HFC) tensors. Using the EIE technique, these HF interactions were assigned to three different radicals, labeled R1, R2 and R3. The anisotropy of the EPR and EIE spectra indicated that R1 and R2 are alkyl radicals (i.e. carbon-centered) and R3 is an alkoxy radical (i.e. oxygen-centered). The EPR data also revealed the presence of an additional alkoxy radical species, labeled R4. Molecular modeling using periodic Density Functional Theory (DFT) calculations for simulating experimental data suggests that R1 and R2 are the hydrogen-abstracted alkyl species centered at C5' and C5, respectively, while the alkoxy radicals R3 and R4 have the unpaired electron localized mainly at O2 and O4'. Interestingly, the DFT study on R4 demonstrates that the trapping of a transferred proton can significantly influence the conformation of a deprotonated cation. Comparison of these results with those obtained from sucrose single crystals X-irradiated at 10 K indicates that the carbon situated next to the ring oxygen and connected to the CH(2)OH hydroxymethyl group is a better radical trapping site than other positions.     

EPR studies of VO2+ ions in kainite single crystals

Electron paramagnetic resonance (EPR) spectra of VO2+ ions doped in Kainite (a mineral salt) single crystals and powder were recorded at room temperature at X-band frequencies.The angular variation studies of the spectra indicate that the VO2+ ion enters Mg2+ ion site substitutionally. The principal values of g and A-tensors were determined from the EPR spectral studies. Using these EPR parameters, the molecular orbital bonding parameters of VO2+ ion in the lattice have been evaluated and discussed.     

EPR and susceptibility studies of Zn1-xMnxTe crystals at room temperature

Single crystals of Zn1-xMnxTe for x = 0.1, 0.25, 0.45, 0.5 and 0.6 were prepared using vertical Bridgman technique. EPR (electron paramagnetic resonance) spectra were recorded at room temperature (303 K) between 0 and 6 kG magnetic field and range of frequency 8.8-9.6 GHz. As the concentration of Mn increases the line width (DeltaH) and the number of spins (Ns) were increased. Susceptibility studies were carried out at room temperature in the range of dc magnetic field 0-10 kG using vibrating sample magnetometer (VSM). Non-linear variation in susceptibility as a function of concentration (x) was observed and was explained on the basis of sp-d and d-d exchange interactions between Mn2+ ions and ZnTe lattice ions. Both EPR and susceptibility studies confirm the paramagnetic state of Zn1-xMnxTe system at RT.     

Photo- and chemically-produced phylloquinone biradicals: EPR and ENDOR study

Phylloquinone biradical triplet species were generated by 300 nm irradiation of frozen (77 K) solutions or by treatment with AlCl₃. The shape of the (Δm_s=1) electron paramagnetic resonance (EPR) signal of the triplet is axially symmetric (E=0) with D=19±0.5 mT for photo-induced and D=11.2±0.5 mT for chemically induced radicals. A half-field signal (Δm_s=2) in the region of g≈4 was detected in both cases, confirming its assignment as a triplet. An additional line arising at the center of the (Δm_s=1) signal with g=2.0048±0.0002 was assigned to the phylloquinone radical anion (PhQ⁻). Electron nuclear double resonance (ENDOR) measurements of the triplet revealed the sign of the D parameter. For photo-generated radicals it appeared to be negative, which is the characteristic of radical dimers with well-separated partners (biradicals). Spin–spin distances of 5.3 and 6.3 Å, respectively, were estimated from the D parameter of photo-generated and chemically prepared phylloquinone biradicals.     

On low temperature fluorescence of perylene crystals

At low temperatures, the broad excimer fluorescence band of α-perylene crystals is replaced by a weakly structured emission at higher energy. This emission originates from a new crystal state (Y-state) which is populated independently of the high temperature excimer (E-state). Due to the temperature dependence of its first order decay rate and due to the thermally activated formation of the E-state, the Y-emission grows rapidly at temperatures below 90 K. The Y-emission differs from the fluorescence of the monomeric β-perylene at 5.5 K by its Stokes shift of 1300 cm^?1, the lack of vibronic structure, the long first order decay time of 40 ns and the absence of bimolecular annihilation indicating a localized state. The Y-state is attributed to a less relaxed pair state formed upon contraction of the dimeric crystal lattice.     

EPR and optical study of Mn2+ doped ammonium tartrate single crystals

EPR study of Mn2+ doped ammonium tartrate single crystals is carried out at room temperature. The spin Hamiltonian parameters are: gx=1.9225+/-0.0002, gy=1.9554+/-0.0002, gz=2.1258+/-0.0002, A=(78+/-2) x 10(-4) cm(-1), B=(75+/-2) x 10(-4) cm(-1), D=(191+/-2) x 10(-4) cm(-1), E=(61+/-2) x 10(-4) cm(-1) and a=(22+/-1) x 10(-4) cm(-1) for site I and gx=1.9235+/-0.0002, gy=1.9574+/-0.0002, gz=2.0664+/-0.0002, A=(78+/-2) x 10(-4) cm(-1), B=(75+/-2) x 10(-4) cm(-1), D=(180+/-2) x 10(-4) cm(-1), E=(57+/-2) x 10(-4) cm(-1) and a=(22+/-1) x 10(-4) cm(-1) for site II, respectively. The observed optical bands are fitted with inter-electronic repulsion parameters (B and C), crystal field parameter (Dq) and Trees correction (alpha) and the values found are B=752, C=2438, Dq=765 and alpha=76 cm(-1). The data obtained are further used to discuss the surrounding crystal field and the nature of metal-ligand bonding in the crystal.