A novel strapped porphyrin receptor for molecular recognition

A novel strapped porphyrin receptor Zn1, in which two electron-rich bis(p-phenylene)-34-crown ether-10 units are incorporated, has been designed and synthesized from the newly developed intermediate 7 for investigating new chemistry of molecular recognition. ¹H NMR and UV-Vis studies revealed that Zn1 displays relatively weak binding abilities to neutral electron deficient naphthalene-1,8,4,5-tetracarboxydiimide (NDI) derivatives 13 (no simple complexing stoichiometry was observed), 19 (K_a=48(±5) M⁻¹) and 30 (K_a=46(±5) M⁻¹) in chloroform-d, strong binding ability to pyridine derivative 25, (K_a=1.5(±0.12)×10³ M⁻¹) in chloroform, moderately strong binding ability to tetracationic compound 35·4PF₆ (K_a=475(±50) M⁻¹) in acetone-d₆, and very strong binding affinity to compound 22 (K_a=6.5(±0.7)×10⁵ M⁻¹), which consists of one pyridine and two NDI units, in chloroform. Remarkable cooperative effect of the intermolecular metal-ligand coordination and donor-acceptor interactions in complex Zn1·22 was observed by comparing the complexing behaviors between Zn1 and the appropriately designed guests. Complex Zn1·22 possesses an unique three-dimensional tri-site binding feature. For comparison, the complexing affinity of 1 toward compounds 13, 19, and 30 in chloroform-d and 35·4PF₆ in acetone-d₆ has also been investigated and the binding patterns in different complexes were explored. The results demonstrate that strapped porphyrin derivatives are ideal precursors for constructing new generation of three-dimensional multi-site artificial receptors for molecular recognition and host-guest chemistry.     

Fluoride-induced intermolecular excimer formation of bispyrenyl thioureas linked by polyethylene glycol chains

New bispyrenyl thioureas linked by polyethylene glycol (PEG) chains, L1-L3, and methoxy benzene pyrene thiourea, L4, were synthesized. Upon binding with F⁻ in CHCl₃, L1-L3 exhibited strong excimer emission bands (I_E) and weak monomer emission bands (I_M), while L4 displayed the same intensity of both bands. However, little or no change was observed in fluorescence spectra of L1 upon adding OH⁻, AcO⁻, BzO⁻, H₂PO₄⁻, Cl⁻, Br⁻, and I⁻. Therefore, only F⁻ induced the pyrene excimer formation. Job’s plots showed 1/1 or 2/2 complexation of L1 with F⁻. Ratios of I_E/I_M of L1·F⁻ complex were dependent on the concentration of L1, implying that the dimerization of L1 proceeded via the intermolecular excimer formation. Among L1-L4, L1 possessed the highest binding constant and sensitivity toward F⁻ implying the importance of the linking PEG chain. L1 was demonstrated to be an excellent probe for F⁻ in CHCl₃ with the detection limit as low as 46.2 μg/L.     

Unusual conformational properties of 1,3-dimethyl-1,1,3,3-tetrakis(trimethylsilyl)trisilane: A preparative, X-ray, Raman spectroscopic and ab initio study

The heptasilane Me(SiMe₃)₂SiSiH₂SiMe(SiMe₃)₂ was synthesized from Me(SiMe₃)₂SiK and H₂Si(OSO₂CF₃)₂. Crystals suitable for a X-ray single crystal analysis could be grown, with the somewhat surprising result that the two dihedral angles (H₃)CSiSi(H₂)Si are different in the crystal (24.58(10)° and 31.67(11)°). SiSiSi-bonds angles are widened, with values up to 117°. Ab initio calculations at the density functional B3LYP level employing 6-311G(d) basis sets predict minima for five conformers 1-5 with relative energies 0.0, 3.1, 8.2, 10.8 and 18.1 kJ/mol, respectively. Moreover, SiSiSiSi dihedral angles spanning the range 43.5-172.3° are predicted, reflecting the small forces which are required for distorting these angles.In the Raman spectrum of a solution in toluene, three lines at 350, 340 and 330 cm⁻¹ are observed in a wavenumber range which is typical for the SiSi-pulsation of methylated oligosilanes. The relative intensity ratio of the bands is temperature dependent, reflecting the changes in conformer concentrations that occur according to Boltzman’s law. Supported by the ab initio calculations, the Raman band at 350 cm⁻¹ is assigned to an ‘averaged’ conformer 1 and 2, because a rapid interconversion between 1 and 2 has to be assumed due to a small barrier separating them. The bands with wavenumbers 340 and 330 cm⁻¹ originate from conformers 3 and 4. From the Raman spectra, relative energies 0.0 (1 + 2), 2.2 (3) and 6.3 (4) kJ/mol are deduced, the presence of 5 is not observed. Caused by solvent effects, these values differ somewhat from the ab initio results.     

Molecular structures and ab initio molecular orbital calculations of the optically active derivatives of 1-aminocyclopropane-1-carboxylic acid

The novel optically active derivatives of 2,2′-disubstituted-1-aminocyclopropane-1-carboxylic acid (−)-2 and (+)-3 were synthesised from the spiro-azlactone (+)-1. Oxidation of the diol moiety of (+)-3 gave by ring enlargement the racemic mixture of 2,3-dihydrofuran derivative (±)-6. This conversion is explained by stepwise rearrangement of the initially formed tetrasubstituted cyclopropanecarbaldehyde 4 through zwitterionic's reactive intermediate 5. The formation of (±)-6 is preferred energetically as established by ab initio calculations of the ground states and possible intermediates for that rearrangement. The crystal structure and absolute configuration of the compounds (+)-1, (−)-2, (+)-3 and (−)-7 were determined by single-crystal X-ray diffraction method. All four compounds possess Z-configuration of the cyclopropane ring. The dioxolane ring in the structures (+)-1 and (−)-2 adopts half-chair conformation, while the cyclopropane ring and geminally substituted groups in the structures (−)-2, (+)-3 and (−)-7 possess the anticlinal conformation. The molecules of the compound (+)-1 are connected by very weak intermolecular hydrogen bond of C-H?O type. In the compounds (−)-2, (+)-3 and (−)-7inter- and intramolecular hydrogen bonds of N-H?O type were observed. The spiro-compound (+)-1 exhibited a more pronounced inhibitory activity against the proliferation of murine leukemia and human T-lymphocytes cells than other type of tumor cell lines and normal human fibroblast cells.     

Synthesis and properties of novel 5-(cyclohepta-2′,4′,6′-trienylidene)pyrimidine-2(1H),4(3H),6(5H)-triones: methodology for synthesizing cyclohepta[b]pyrimido[5,4-d]furan-8(7H),10(9H)-dionylium tetrafluoroborates

Novel condensation reaction of tropone with N-substituted and N,N′-disubstitued barbituric acids in Ac₂O afforded 5-(cyclohepta-2′,4′,6′-trienylidene)pyrimidine-2(1H),4(3H),6(5H)-trione derivatives (8a-f) in moderate to good yields. The ¹³C NMR spectral study of 8a-f revealed that the contribution of zwitterionic resonance structures is less important as compared with that of 8,8-dicyanoheptafulvene. The rotational barriers (ΔG^‡) around the exocyclic double bond of mono-substituted derivatives 8a-c were obtained to be 14.51-15.03 kcal mol⁻¹ by the variable temperature ¹H NMR measurements. The electrochemical properties of 8a-f were also studied by CV measurement. Upon treatment with DDQ, 8a-c underwent oxidative cyclization to give two products, 7 and 9-substituted cyclohepta[b]pyrimido[5,4-d]furan-8(7H),10(9H)-dionylium tetrafluoroborates (11a-c·BF₄⁻ and 12a-c·BF₄⁻) in various ratios, while that of disubstituted derivatives 8d-f afforded 7,9-disubstituted cyclohepta[b]pyrimido[5,4-d]furan-8(7H),10(9H)-dionylium tetrafluoroborate (11d-f·BF₄⁻) in good yields. Similarly, preparation of known 5-(1′-oxocycloheptatrien-2′-yl)-pyrimidine-2(1H),4(3H),6(5H)-trione derivatives (14a-d) and novel derivatives 14e,f was carried out. Treatment of 14a-c with aq. HBF₄/Ac₂O afforded two kinds of novel products 11a-c·BF₄⁻ and 12a,c·BF₄⁻ in various ratios, respectively, while that of 14d-f afforded 11d-f. The product ratios of 11a-c·BF₄⁻ and 12a-c·BF₄⁻ observed in two kinds of cyclization reactions were rationalized on the basis of MO calculations of model compounds 20a and 21a. The spectroscopic and electrochemical properties of 11a-f·BF₄⁻ and 12a-c·BF₄⁻ were studied, and structural characterization of 11c·BF₄⁻ based on the X-ray crystal analysis and MO calculation was also performed.     

Alkyl group dependence on structure and magnetic properties in layered cobalt coordination polymers containing substituted glutarate ligands and 4,4′-bipyridine

Five two-dimensional divalent cobalt coordination polymers containing 4,4′-bipyridine (bpy) and substituted or unsubstituted glutarate ligands have been prepared hydrothermally and structurally characterized by single-crystal X-ray diffraction. [Co(mg)(bpy)]_n (1, mg=3-methylglutarate) forms a (4,4) rhomboid grid structure based on the connection of {Co₂(CO₂)₂} dimeric units. Using the more sterically encumbered ligands 3,3-dimethylglutarate (dmg) and 3-ethyl, 3-methylglutarate (emg) generated {[Co(dmg)(bpy)(H₂O)]·2H₂O}_n (2) and {[Co(emg)(bpy)(H₂O)]·H₂O}_n (3), respectively. These complexes manifest {Co(CO₂)}_n chains linked into 2-D by aliphatic dicarboxylate and bpy ligands. The “tied-back” substituted glutarate ligand 1,1-cyclopentanediacetate (cda) afforded [Co(cda)(bpy)]_n (4), and the unsubstituted glutarate (glu) generated [Co(glu)(bpy)]_n (5), both of which exhibit a topology similar to that of 1. The magnetic properties of complexes 1-4 were analyzed successfully with a recently developed phenomenological chain model accounting for both magnetic coupling (J) and zero-field splitting effects (D), even though 1 and 4 contain isolated, discrete {Co₂(CO₂)₂} dimers. The D parameter in this series varied between 21.8(8) and 48.0(9) cm⁻¹. However weak antiferromagnetic coupling was observed in 1 (J=-2.43(4) cm⁻¹) and 4 (J=−0.89(2) cm⁻¹), while weak ferromagnetic coupling appears to be operative in both 2 (J=0.324(5) cm⁻¹) and 3 (J=0.24(1) cm⁻¹).     

Synthesis, characterization and DNA binding studies of penta- and hexa-coordinated diorganotin(IV) 4-(4-nitrophenyl)piperazine-1-carbodithioates

Two chlorodiorganotin(IV) complexes with general formula R₂SnClL (R = n-C₄H₉(1) and C₂H₅(2) and a diphenyltin(IV) derivative with general formula Ph₂SnL₂(3), where L = 4-(4-nitrophenyl)piperazine-1-carbodithioate ligand, were prepared and characterized by elemental analysis, Raman, FT-IR, multinuclear NMR (¹H, ¹³C and ¹¹⁹Sn) and mass spectrometry. On the basis of spectroscopic data the effective coordination number of Sn atom was found five (1 and 2) and six (3) both in solution and solid state. Electrochemical, kinetic and thermodynamic parameters of complexes 1-3, interacting with DNA were evaluated by cyclic voltammetry. The linearity of the plots between the peak current (I) and the square root of the scan rate (ν^1/2) indicated the electrochemical processes to be diffusion controlled. The diffusion coefficients of the free (D_f) and DNA bound forms (D_b), standard rate constants (ks) and charge transfer coefficients (α) were determined by the application of Randle-Sevcik, Nicholson and Kochi equations. The values of binding constant and binding site size were evaluated from voltammetric data. The results revealed the following increasing order of binding strength: 1 (5.4 × 10³) < 3 (8.4 × 10³) < 2 (1.24 × 10⁴) M⁻¹. The UV-Vis spectroscopic data also indicated the same order of binding strength. Furthermore, the binding mode was suggested on the base of shift in peak potential (CV) and absorption maxima (UV-Vis spectroscopy).     

The enantioselective synthesis of poison-frog alkaloids (−)-203A, (−)-209B, (−)-231C, (−)-233D, and (−)-235B″

The enantioselective synthesis of indolizidines (−)-203A, (−)-209B, (−)-231C, (−)-233D, and (−)-235B″ has been achieved and the absolute stereochemistry of both indolizidines 203A and 233D was established as 5S,8R,9S. The relative stereochemistry of natural 231C was established by the present asymmetric synthesis.     

Anion and cation binding by a new indole/pyridine/amine-based ion-pair receptor

A new ion-pair receptor bis(3-bromoindol-2-ylmethyl)(2-pyridylmethyl)amine (1) was synthesized and studied for its anion and cation binding behavior using ESI-MS and ¹H NMR spectroscopy. Among halides, 1 exhibits the strongest binding with Cl⁻ to form a 1:1 adduct (K_a = 1042 ± 21 in CD₃CN). Among alkali metal ions, Li⁺ and Na⁺ showed the strongest binding in the formation of a 1·M⁺ complex. The simultaneous binding of Cl⁻ and Li⁺ to 1 was confirmed by ¹H NMR titration of a 1:1 mixture of 1 and Cl⁻ with LiPF₆ in 83:17 v/v mixture of CDCl₃ and DMSO-d₆. DFT-optimized structures of 1·Cl⁻, 1·Li⁺, and 1·Li⁺·Cl⁻ are consistent with the chemical shift changes observed in ¹H NMR studies.     

Synthesis and application of monoterpene-based chiral aminodiols

Primary, secondary and tertiary aminodiols were synthetized regio- and stereoselectively from (−)-α-pinene 1 via α-pinene oxide 2, (−)-trans-pinocarveol 3 and key intermediate epoxy alcohol 4. N-Benzyl derivative 5 was transformed to spiro-fused oxazolidine 13 in a highly regioselective ring closure. Aminodiols and their derivatives 5-13 were applied as chiral catalysts in the enantioselective addition of diethylzinc to benzaldehyde, resulting in chiral 1-phenyl-1-propanol. The substituent effect on the nitrogen was studied in detail and the best enantioselectivity was observed in the case of N-methyl-N-benzyl-substituted derivative 8. The phenomenon was interpreted by using molecular modelling at an ab initio level.     

New A-ring analogs of the hormone 1α,25-dihydroxyvitamin D3: (2′-hydroxymethyl)tetrahydrofuro[1,2-a]-25-hydroxyvitamin D3

Conceptually new, enantiomerically pure bicyclic tetrahydrofuro[1,2-a]-A-ring phosphine oxides (+)-4 and (−)-4 were successfully prepared from methyl 2-pyrone-3-carboxylate and (S)- or (R)-2-(tert-butyldimethylsilyloxy)methyl-2,3-dihydrofuran, respectively. In addition, (2′-hydroxymethyl)tetrahydrofuro[1,2-a]-25-hydroxyvitamin D₃3a and 3b as new A-ring-modified analogs of the natural hormone 1α,25-dihydroxyvitamin D₃ were readily synthesized by using Lythgoe-type coupling of the A-ring phosphine oxides (+)-4 and (−)-4 with C,D-ring ketone (+)-5.     

Synthesis, properties, and oxidizing function of 6-substituted 7,9-dimethylcyclohepta[b]pyrimido[5,4-d]pyrrole-8(7H),10(9H)-dionylium tetrafluoroborates

Uracil-annulated heteroazulenes, 6-substituted 7,9-dimethylcyclohepta[b]pyrimido[5,4-d]pyrrole-8(7H),10(9H)-dionylium tetrafluoroborates 7a,b·BF₄⁻, which are the isoelectronic compounds of 5-dezazaflavin, were synthesized. X-Ray crystal analysis and MO calculations were carried out to clarify the structural characteristics of 7a,b·BF₄⁻. The stability of cations 7a,b is expressed by the pK_R+ values which were determined spectrophotometrically to be 10.9 and 11.2, respectively. The electrochemical reduction of 7a,b exhibited high reduction potentials at −0.84 and −0.87 (V vs Ag/AgNO₃) upon cyclic voltammetry (CV). A good linear correlation between the pK_R+ values and reduction potentials (E1_red) of 7a,b·BF₄⁻ and reference compounds 4·BF₄⁻ and 5·BF₄⁻ was obtained. In a search of the reactivity, reactions of 7a,b·BF₄⁻ with some nucleophiles, hydride and diethylamine, were carried out to clarify that the introduction of nucleophiles to give regio-isomers is dependent on the nucleophile. The photo-induced oxidation reactions of 7a,b·BF₄⁻ toward some alcohols under aerobic conditions were carried out to give the corresponding carbonyl compounds in more than 100% yield [based on compounds 7a,b·BF₄⁻], suggesting the oxidizing function of 7a,b·BF₄⁻ toward alcohols in the autorecycling process.     

Real light emitter in the bioluminescence of the calcium-activated photoproteins aequorin and obelin: light emission from the singlet-excited state of coelenteramide phenolate anion in a contact ion pair

Fluorescence of the phenolate anion (3(O)⁻) and the amide anion (5(N)⁻) of coelenteramide analogues in ion pairs with various counter cations was systematically investigated to elucidate the ionic structure of the light emitter in the bioluminescence of the calcium-activated photoproteins aequorin and obelin. The fluorescent properties of 3(O)⁻ in an ion pair with a conjugate acid of an organic base (BASE-H⁺) were varied depending on the structural variation of the ion pair and the solvent polarity. In particular, the fluorescence of 3(O)⁻ in the ion pair with the conjugate acid of n-butylamine (NBA-H⁺) indicates that the singlet-excited state of 3(O)⁻ (¹3(O)^−∗) and NBA-H⁺ make a contact ion pair in which the fluorescence emission maxima of 3(O)⁻ is sensitive to the solvent polarity and the fluorescence quantum yields of 3(O)⁻ increase in a less polar solvent. The results also confirm that ¹3(O)^−∗ is a twisted intramolecular charge transfer state. By contrast, the fluorescence of 5(N)⁻ in an ion pair depends little on the BASE-H⁺ or the solvent polarity. Based on these results, we conclude that the light emitter in aequorin and obelin bioluminescences is the singlet-excited state of coelenteramide phenolate anion 2(O)⁻ (¹2(O)^−∗) in a contact ion pair with an imidazolium side chain of a histidine residue, which is located at the less polar active sites of the photoproteins. We also propose a mechanism for the bioluminescence reaction, including the chemiexcitation process to give ¹2(O)^−∗.     

Substituted six-membered ring carbenes: the effects of amino and cyclopropyl groups through DFT calculations

DFT calculations are employed to compare and contrast six-membered ring carbenes including 1,3-dimethyltetrahydropyrimidin-2-ylidene (1a), 1-methyl-3-cyclopropyltetrahydropyridine-2-ylidene (2a), and 1,3-dicyclopropylcyclohexane-2-ylidene (3a) as well as their unsaturated analogues 1b, 2b, 3b, and 2c. The amino groups exert singlet-triplet energy separation (?E_s−t) of 60.9 kcal/mol to 1a while cyclopropyls induce a ?E_s−t of 14.8 kcal/mol to 3a. The simultaneous presence of amino and cyclopropyl in 2a leads to a ?E_s−t of 43.3 kcal/mol. Unsaturation slightly increases the ?E_s−t of 1a and 3a but not that of 2a. Our thermodynamic, kinetic, and reactivity results are compared with those of synthetic five-membered ring N-heterocyclic carbenes.     

Mononuclear Fe(III) and tetranuclear [Fe(III)Gd(III)]2 complexes with a Schiff-base ligand derived from the o-vanillin: Synthesis, crystal structures and magnetic properties

The mononuclear high-spin iron(III) complexes [Fe(3-MeOsalpn)Cl(H₂O)] (1) and [Fe(3-MeOsalpn)(NCS)(H₂O)]·0.5CH₃CN (2) and the tetranuclear oxo-bridged compound [{Fe(3-MeOsalpn)Gd(NO₃)₃}₂(μ-O)]·CH₃CN (3) [3-MeOsalpn²⁻ = N,N′-propylenebis(3-methoxysalicylideneiminate)] have been prepared and magneto-structurally characterised. The iron(III) ion in 1 and 2 is six-coordinated in a somewhat distorted octahedral surrounding with the two phenolate-oxygens and two imine-nitrogens from the Schiff-base building the equatorial plane and a water (1 and 2) and a chloro (1)/thiocyanate-nitrogen (2) in the axial positions. The neutral mononuclear units of 1 and 2 are assembled into centrosymmetric dinuclear motifs through hydrogen bonds between the axially coordinated water molecule of one iron centre and methoxy-oxygen atoms from the Schiff-base of the adjacent iron atom. The values of the intradimer metal-metal distance within the supramolecular dimers are 4.930 (1) and 4.878 Å (2). The tetranuclear of 3 can be described as two {Fe^III(3-MeOsalpn)} units connected through an oxo-bridge, each one hosting a [Gd^III(NO₃)₃] entity in the outer cavity defined by the two phenolate- and two methoxy-oxygen atoms. The values of the intramolecular Fe?Fe and Fe?Gd distances in 3 are 3.502 and 3.606 Å, respectively. The analysis of the magnetic data of 1-3 in the temperature range 1.9-300 K shows the occurrence of weak intermolecular antiferromagnetic interactions in 1 and 2 [J = −0.76 (1) and −0.75 cm⁻¹ (2) with the Hamiltonian defined as H = −JS_Fe1·S_Fe1] whereas two intramolecular antiferromagnetic interactions coexist in 3, one very strong between the two iron(III) ions (J₁) through the oxo bridge and the other much weaker between the iron(III) and the Gd(III) ions (J₂) across the double phenoxo oxygens [J₁ = −275 cm⁻¹ and J₂ = −3.25 cm⁻¹, the Hamiltonian being defined as H=-J₁S_Fe1·S_Fe1^′-J₂(S_Fe1·S_Gd1+S_Fe1^′·S_Gd1^′)]. These values are analysed in the light of the structural data and compared with those of related systems.     

Control of molecular weight distribution in polycondensation polymers 2. Poly(ether ketone) synthesis

Synthesis of aromatic poly(ether ketone) (3) with a narrow molecular weight distribution (M_w/M_n) was investigated via polycondensation. M_ns of 3 could be controlled varying the feed ratio of monomer (1) and initiator (2) maintaining relatively narrow M_w/M_ns (<1.3). The kinetics of polycondensation obeyed a first-order relationship between polycondensation time and -(1/[2]₀) ln([1]/[1]₀), and the rate of polycondensation was estimated as 2.57 mol⁻¹ L h⁻¹. MALDI-TOF mass analysis of 3 indicated that polycondensation should proceed via chain growth manner to give 3 having an initiator unit in each chain end.     

Synthesis and characterization of N-(2-pyridyl)benzamide-based nickel complexes and their activity for ethylene oligomerization

A series of N-(2-pyridyl)benzamides (1)-(11) and their nickel complexes, [N-(2-pyridyl)benzamide]dinickel(II) di-μ-bromide dibromide (12)-(16) and (aryl)[N-(2-pyridyl)benzamido](triphenylphosphine)nickel(II) (17)-(24), were synthesized and characterized. The single-crystal X-ray analysis revealed that 12 and 14 are binuclear nickel complexes bridged by bromine atoms and each nickel atom adopts a distorted trigonal bipyramidal geometry. The key feature of the complexes 17, 19 and 23 is each has a six-membered nickel chelate ring including a deprotonated secondary nitrogen atom and an O-donor atom. The nickel complexes show moderate to high catalytic activity for ethylene oligomerization with methylaluminoxane (MAO) as cocatalyst. The activity of 12-16/MAO systems is up to 3.3 × 10⁴ g mol⁻¹ h⁻¹ whereas for 17-24/MAO systems it is up to 4.94 × 10⁵ g mol⁻¹ atm⁻¹ h⁻¹. The influence of Al/Ni molar ratio, reaction temperature, reaction period and PPh₃/Ni molar ratio on catalytic activity was investigated.     

Copper(II) complexes of N4 tetradentate ligands with flexible alkyl spacers: Crystal structure,DNA binding and cleavage studies

Mononuclear copper(II) complexes, [Cu L1] (ClO₄)₂ (1), [Cu L2] (ClO₄)₂ (2) and [Cu L3] (ClO₄)₂ (3) with quadridentate Schiff base ligands L1 (N,N′-bis-pyridin-2-ylmethyl-butane-1,4-diimine), L2 (N,N′-bis-pyridin-2-ylmethyl-pentane-1,5-diimine) and L3 (N,N′-bis-pyridin-2-ylmethyl-hexane-1,6-diimine) have been synthesized and characterized. The crystal structure data of 1 reveals the existence of the complex in two different geometries, namely a square pyramid and a distorted octahedron, which eventually leads to the packing of the molecule into helical and anti-parallel structures respectively. Absorption titration studies with calf thymus DNA for all three complexes are suggestive of groove binding with binding constant values for 1, 2 and 3 being 2.6 ± 0.2 × 10⁴ M⁻¹, 11.5 ± 0.2 × 10⁴ M⁻¹ and 1.83 ± 0.2 × 10⁴ M⁻¹ respectively. Control cleavage experiments using pBR 322 plasmid DNA and distamycin suggest minor groove binding for these complexes. In the presence of ascorbic acid, the complexes show efficient DNA cleavage, the order of efficiency being 1 > 2 ≅ 3.     

Oxidative and hydrolytic DNA cleavage by Cu(II) complexes of salicylidene tyrosine schiff base and 1,10 phenanthroline/bipyridine

Ternary Cu(II) complexes [Cu(II)(saltyr)(B)] (1,2), (saltyr = salicylidene tyrosine, B = 1,10 phenanthroline (1) or 2,2′ bipyridine (2)) were synthesized and characterized by various techniques. The complexes exhibit square pyramidal (CuN₃O₂) geometry. CT-DNA binding studies revealed that the complexes show good binding propensity (K_b = 3.47 × 10⁴ M⁻¹ and 3.01 × 10⁴ M⁻¹ for 1 and 2, respectively). The role of these complexes in the oxidative and hydrolytic DNA cleavage was studied. The catalytic ability of 1 and 2 follows the order: 1 > 2. The rate constants for the hydrolysis of phosphodiester bond were determined as 2.80 h⁻¹ and 2.11 h⁻¹ for 1 and 2, respectively. It amounts to (0.58-0.77) × 10⁸ fold rate enhancement compared to non-catalyzed DNA cleavage, which is significant.     

Synthesis and properties of bis(heteroazulen-3-yl)methyl cations and bis(heteroazulen-3-yl)ketones

The synthesis and properties of a novel type of bis(heteroazulen-3-yl)methyl cations, bis(2-oxo-2H-cyclohepta[b]furan-3-yl)methyl cation salt and nitrogen analogues, (9a-c·PF₆⁻) and (9a-c·BF₄⁻), as well as bis(heteroazulen-3-yl)ketones (12a-d) are studied. The synthetic method was based on a TFA-catalyzed electrophilic aromatic substitution on the heteroazulenes (6a-d) with paraformaldehyde to afford the corresponding disubstituted methane derivatives 7a-d, followed by oxidative hydrogen abstraction with DDQ, and subsequent exchange of the counter-anion by using aq. HPF₆ or aq. HBF₄. In addition, the reaction of 7a-d with 2.2 equiv. amounts of DDQ afforded carbonyl compounds 12a-d. The delocalization of the positive charge of 9a-c was evaluated by the ¹H and ¹³C NMR spectral data. The thermodynamic stability of cations 9a-c was evaluated to be in the order 9a<9b<9c on the basis of their reduction potentials measured by cyclic voltammetry (CV) and pK_R+ values (2.6-10.3) obtained spectrophotometrically. The reduction waves of cations 9a-c were irreversible, suggesting the dimerization of the radical species generated by one-electron reduction. This was demonstrated by the reduction of 9a·BF₄⁻ with Zn powder to give dimerized product 14a. In addition, the quenching of 9a·BF₄⁻ with MeOH/NaHCO₃ gives ether derivative 15a, which is proposed for the precursor for synthesizing tris(heteroazulene)-substituted methyl cations bearing two different heteroazulene-units.