Structural studies of 4-aryloctahydro-pyrido[1,2-c]pyrimidine derivatives

¹³C cross-polarisation magic angle spinning NMR data have been reported for four derivatives of 4-aryl-octahydro-pyrido[1,2-c]pyrimidine-1,3-dione and the X-ray diffraction data for two (with 2′-Me and 2′-OMe). The crystal structures show the presence of centrosymmetric cyclic dimers with intermolecular C1O?H-N or C3O?H-N hydrogen bonds, the configuration at the chiral centres (C4 and C4_a) was determined as RR (SS). The twisting of aromatic ring at C4 with respect to the pyrido[1,2-c]pyrimidine skeleton is about 68-109°.     

A xanthone and a polyketide derivative from the leaves of Cassia obtusifolia (Leguminosae)

A new xanthone, 1,8-dihydroxy-3-methoxy-6-methylxantone and a new polyketide derivative, (4R^∗,5S^∗,6E,8Z)-ethyl-4-((E)-but-1-enyl)-5-hydroxypentdeca-6,8-dienoate, together with 20 known secondary metabolites, including 2 steroids, 4 xanthones, 10 anthraquinones, 2 triterpenoids, 1 fatty ester, and (E)-eicos-14-enoic acid, were isolated from the leaves of Cassia obtusifolia. To the best of our knowledge, the last compound was isolated from a natural source for the first time. The structures of all the compounds were elucidated on the basis of 1D and 2D NMR experiments. Some of the compounds were tested against Salmonella typhi, Staphylococcus aureus, Candida albicans ATCC 9002, and Candida tropicalis, they did not show any activity.     

Aliphatic sulfates released from Daphnia induce morphological defense of phytoplankton: isolation and synthesis of kairomones

Six aliphatic sulfates, kairomones released from a crustacean Daphnia pulex induce morphological changes of phytoplankton Scenedesmus gutwinskii at ppb (10⁻⁹ g/mL) concentrations.     

Determination of quinolizidine alkaloids in Sophora medicinal plants by capillary electrophoresis

A new capillary electrophoresis (CE) method for the determination of quinolizidine alkaloids in Sophora medicinal plants was developed. A total of seven alkaloid components (cytisine, sophocarpine, matrine, lehmannine, sophoranol, oxymatrine and oxysophocarpine) were separated within 15 min. The running buffer was a 50 mM phosphate buffer containing 1%HP-β-CD and 3.3% isopropanol. The linear calibration ranges were 5.50-88.0 μg ml⁻¹ for cytisine and lehmannine, 5.00-88.0 μg ml⁻¹ for sophocarpine and sophoranol, 5.60-89.6 μg ml⁻¹ for matrine and oxysophocarpine, and 24.0-384 μg ml⁻¹ for oxymatrine. The recoveries of the seven alkaloids were 96.0-102.9% with relative standard deviations from 1.50 to 3.00% (n = 5). The method was successfully applied to different Sophora medicinal plants including Sophora flavescens, Sophora tonkinensis and Sophora alopecuroides.     

Fluorescence detection of total count of Escherichia coli and Staphylococcus aureus on water-soluble CdSe quantum dots coupled with bacteria

The aim of this paper was to demonstrate a fluorescence measurement method for rapid detection of two bacterial count by using water-soluble quantum dots (QDs) as a fluorescence marker, and spectrofluorometer acted as detection apparatus, while Escherichia coli (E. coli) and Staphylococcus aureus (S. aureus) were as detection target bacteria. Highly luminescent water-soluble CdSe QDs were first prepared by using thioglycolic acid (TGA) as a ligand, and were then covalently coupled with target bacteria. The bacterial cell images were obtained using fluorescence microscopy. Our results showed that CdSe QDs prepared in water phase were highly luminescent, stable, and successfully conjugated with E. coli and S. aureus. The fluorescence method could detect 10²-10⁷ CFU/mL total count of E. coli and S. aureus in 1-2 h and the low detection limit is 10² CFU/mL. A linear relationship of the fluorescence peak intensity and log total count of E. coli and S. aureus have been established using the equation Y = 118.68X − 141.75 (r = 0.9907).     

Studies on the Components of Crude and Processed Fructus Corni by ESI-MS

The components of crude and processed Fructus Corni were investigated by means of electrospray ionization-tandem mass spectrometry（ESI-MSn） technique in the negative ion mode. Compared with those of crude Fructus Corni, the chemical components of the processed Fructus Corni were changed both in quality and in quantity. From the ESI-MS spectra of the crude and processed Fructus Corni, six peaks were selected to establish the characte-ristic ESI-MS peaks. Several factors in the processing procedure were examined. The experimental results demonstrate that the chemical reactions that occurred in the processing procedure can be used for the elucidation of the processed mechanism of Fructus Corni, which is regularly affected by the processing conditions. The present article provides both the chemistry evidence for the understanding of the processing procedure of Fructus Corni and the specific methodology for the research of the processing procedure and quality identification of traditional Chinese medicine.     

Acremines A-F, novel secondary metabolites produced by a strain of an endophytic Acremonium, isolated from sporangiophores of Plasmopara viticola in grapevine leaves

Six novel metabolites, acremines A-F have been isolated from agar cultures of a strain of Acremonium sp. Their structures and stereochemistry were elucidated using a combination of ¹³C and ¹H homo and heteronuclear 2D NMR experiments and X-ray analysis. Acremines A-D inhibited the germination of sporangia of Plasmopara viticola.     

A general method for the synthesis of oligosaccharides consisting of α-(1→2)- and α-(1→3)-linked rhamnan backbones and GlcNAc side chains

A general method has been developed for the synthesis of oligosaccharides consisting of (1→2)- and (1→3)-linked rhamnans with GlcNAc side chains. As examples, highly effective and convergent syntheses of two decasaccharides in the O polysaccharide moiety of the lipopolysaccharide of the phytopathogenic bacterium Pseudomonas syringae pv. ribicola NCPPB 1010 were achieved. The two decasaccharides consist of O polysaccharide repeating units I+II and II+I, respectively. Allyl 3-O-acetyl-4-O-benzoyl-α-l-rhamnopyranoside, allyl 2-O-benzoyl-3-O-chloroacetyl-α-l-rhamnopyranoside, 2,4-di-O-benzoyl-3-O-chloroacetyl-α-l-rhamnopyranosyl trichloroacetimidate, and 3-O-acetyl-2,4-di-O-benzoyl-α-l-rhamnopyranosyl trichloroacetimidate, which were obtained by highly regioselective 3-O-acylations, were used as the key synthons to obtain the required α-(1→2)- and α-(1→3)-linked rhamnoocta saccharide acceptors with 3³- and 3⁷-free hydroxyl groups. Therefore, several disaccharides were synthesized, from which tetrasaccharides and hexasaccharides were then synthesized. Coupling of the hexasaccharide donors with the disaccharide acceptors gave the octasaccharide acceptors. Finally, the coupling of 3,4,6-tri-O-acetyl-2-deoxy-2-phthalimido-β-d-glucopyranosyl trichloroacetimidate with the octasaccharide acceptors, followed by deprotection, afforded the two target decasaccharides. A repeating hexasaccharide unit of the cell wall polysaccharide of β-hemolytic Streptococci Group A was also synthesized in a similar way.     

Calyciphylline G, a novel alkaloid with an unprecedented fused-hexacyclic skeleton from Daphniphyllum calycinum

Calyciphylline G (1), a novel Daphniphyllum alkaloid with an unprecedented fused-hexacyclic skeleton containing a 5-azatricyclo[6.2.1.0^1,5]undecane ring, has been isolated from the stem of Daphniphyllum calycinum (Daphniphyllaceae), and the structure and relative stereochemistry were elucidated on the basis of spectroscopic data.     

Identification of polyoxypregnane glycosides from the stems of Marsdenia tenacissima by high-performance liquid chromatography/tandem mass spectrometry

A facile method based on high-performance liquid chromatography coupled with electrospray ionization tandem mass spectrometry (HPLC/(+)ESI-MSⁿ) has been established for the analysis of polyoxypregnane glycosides in the stems of Marsdenia tenacissima. The data reveals the ability of MSⁿ in the structural elucidation of polyoxypregnane glycosides including the nature of the polyoxypregnane core, the kinds of the substituents and the types of sugar residues. Offline Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) is also performed to assign accurate elemental compositions. In this study, eighteen polyoxypregnane glycosides have been investigated. Among these components, five compounds are unambiguously identified as Marsdenoside K, Tencissoside A, B, C and D; two compounds are established as novel compounds based on mass spectral data; and the other eleven compound's structures are tentatively proposed. Furthermore, breakdown curves are constructed to distinguish five pairs of isomers among these eighteen compounds. As far as our knowledge, this is the first report on identification of polyoxypregnane glycosides in the stems of M. tenacissima by HPLC/ESI-MSⁿ directly, which could save time and material consuming efforts in traditional phytochemistry analyses.     

Caldaphnidines A-F, six new Daphniphyllum alkaloids from Daphniphyllum calycinum

Six new Daphniphyllum alkaloids, namely caldaphnidines A-F (1-6), together with eight known ones, deoxycalyciphylline B, deoxyisocalyciphylline B, bukittiggine, calycicine A, methyl homosecodaphniphyllate, daphnilactone B, and daphnezomines L-M, were isolated from the leaves and the seeds of Daphniphyllum calycinum. The structure of 1 was determined by a single-crystal X-ray diffraction study, and the structures of 2-6 were established by spectral methods, especially two-dimensional NMR techniques (¹H-¹H COSY, HMQC, HMBC, and NOESY).     

Luminescence of NaGdFPO4:Ln after VUV excitation: A comparison with GdPO4:Ln (Ln=Ce, Tb)

The phosphors NaGdFPO₄:Ln³⁺ and GdPO₄:Ln³⁺ (for Ln³⁺=Ce³⁺ and Tb³⁺) were prepared by solid-state reaction technique, the VUV-vis spectroscopic properties of the phosphors were investigated, and we vividly compare the luminescence of Ce³⁺ and Tb³⁺ in the hosts. For phosphors GdPO₄:Ln³⁺, the band near 155 nm in VUV excitation spectrum is assumed to be the host-related absorption, and for NaGdFPO₄:Ln³⁺ the absorption is moved to longer wavelength, near 170 nm, showing the P-O bond covalency increased after fluoridation. The f-d transitions of Ce³⁺ and Tb³⁺ in the host lattices are assigned and corroborated, and it was found that the 5d states are with lower energy in NaGdFPO₄:Ln³⁺ than those in GdPO₄:Ln³⁺. For fluoridation of GdPO₄:Ln³⁺ to NaGdFPO₄:Ln³⁺, the energy change of Ln³⁺ (Ln=Ce, Tb) 5d states is consistent with that of host-related absorption.     

A novel acylated quercetin tetraglycoside from oolong tea (Camelia sinensis) extracts

A novel acylated quercetin tetraglycoside, namely quercetin 3-O-(2^G-p-coumaroyl-3^G-O-β-l-arabinosyl-3^R-O-β-d-glucosylrutinoside) was isolated from oolong tea (Camelia sinensis) extracts. Structural analysis of this compound was achieved by NMR, TOF-MS and high-resolution FAB-MS. Triglycosyl flavonols have previously been reported from tea leaves and tea seeds however this is the first report of an aromatic acylated and tetraglycosyl flavonol.     

Five new isocoumarins from Sonoran desert plant-associated fungal strains Paraphaeosphaeria quadriseptata and Chaetomium chiversii

Five new isocoumarins, paraphaeosphaerins A-C and chaetochiversins A and B, biogenetically related to monocillin I and radicicol, have been isolated from solid agar cultures of Paraphaeosphaeria quadriseptata and Chaetomium chiversii, two fungal strains living in association with the Sonoran desert plants, Opuntia leptocaulis and Ephedra fasciculata, respectively. A new chroman-4-one, aposphaerin C, was also isolated from P. quadriseptata. Their structures and stereochemistry were elucidated using a combination of ¹H and ¹³C homo- and hetero-nuclear 2D NMR techniques, ¹H NMR analysis of Mosher's esters, and chemical correlations.     

Distribution and accumulation of antimony in plants in the super-large Sb deposit areas, China

Antimony (Sb) distribution and accumulation in plants in Xikuangshan Sb deposit area, the only one super-large Sb deposit in the world, Hunan, China were investigated. Results show that soils were severely polluted with the average Sb concentrations up to 5949.20 mg kg^− 1. Sb widely occurred in 34 plants with various concentrations ranging from 3.92 mg kg⁻¹ to 143.69 mg kg^− 1, Equisetaceae family has the highest concentration (98.23 mg kg^− 1) while Dryopteridacea family has the lowest one (6.43 mg kg^− 1). H. ramosissima species of Equisetaceae family had the highest Sb average concentration of 98.23 mg kg^− 1 and P. vittata species of Pteridaceae family showed advantage of accumulating Sb from the contaminated environment (Biological Accumulation Coefficient, BAC = 0.08). Almost all species enriched Sb in their upground part such as shoot, leaf and flower (Biological Transfer Coefficient, BTC > 1), which may attribute to the high acropetal coefficient and Sb transformation from the atmosphere to the plants. P. phaseoloides and D. indicum showed predominantly accumulation of Sb in the upground part with BTC of 6.65 and 5.47, respectively.From the low bioavailable fraction in soils and weak relationship between total soil concentrations in soils and plants, it seems that the Sb bioavailability was limited and varied with different soil sites as well as plant species. Those observations would be significant to the phytoaccumulation and phytoremediation of plants and ecological and environmental risk assessment in Sb contaminated areas.     

Dual-color upconversion fluorescence and aptamer-functionalized magnetic nanoparticles-based bioassay for the simultaneous detection of Salmonella Typhimurium and Staphylococcus aureus

A sensitive luminescent bioassay for the simultaneous detection of Salmonella Typhimurium and Staphylococcus aureus was developed using aptamer-conjugated magnetic nanoparticles (MNPs) for both recognition and concentration elements and using upconversion nanoparticles (UCNPs) as highly sensitive dual-color labels. The bioassay system was fabricated by immobilizing aptamer 1 and aptamer 2 onto the surface of MNPs, which were employed to capture and concentrate S. Typhimurium and S. aureus. NaY_0.78F₄:Yb_0.2,Tm_0.02 UCNPs modified aptamer 1 and NaY_0.28F₄:Yb_0.70,Er_0.02 UCNPs modified aptamer 2 further were bond onto the captured bacteria surface to form sandwich-type complexes. Under optimal conditions, the correlation between the concentration of S. Typhimurium and the luminescent signal was found to be linear within the range of 10¹–10⁵ cfu mL⁻¹ (R² = 0.9964), and the signal was in the range of 10¹–10⁵ cfu mL⁻¹ (R² = 0.9936) for S. aureus. The limits of detection of the developed method were found to be 5 and 8 cfu mL⁻¹ for S. Typhimurium and S. aureus, respectively. The ability of the bioassay to detect S. Typhimurium and S. aureus in real water samples was also investigated, and the results were compared to the experimental results from the plate-counting methods. Improved by the magnetic separation and concentration effect of MNPs, the high sensitivity of UCNPs, and the different emission lines of Yb/Er- and Yb/Tm-doped NaYF₄ UCNPs excited by a 980 nm laser, the present method performs with both high sensitivity and selectivity for the two different types of bacteria.     

Non-chromatographic screening method for the determination of mercury species. Application to the monitoring of mercury levels in Antarctic samples

A simple non-chromatographic method for the determination of mercury (Hg²⁺), methylmercury (MeHg⁺), dimethylmercury (Me₂Hg), and phenylmercury (PhHg⁺) employing atomic fluorescence spectrometry (AFS) as detection technique was developed. Mercury species showed a particular behavior in the presence of several reagents. In a first stage SnCl₂ was employed for Hg²⁺ determination; in a second step, [Hg²⁺ + PhHg⁺] concentration was determined using SnCl₂ and UV radiation. MeHg⁺ decomposition was prevented adding 2-mercaptoethanol. In a third stage, [Hg²⁺ + PhHg⁺ + MeHg⁺] concentration was determined using K₂S₂O₈. Finally, the four species were determined employing NaBH₄. Reagents concentration and flow rates were optimized. The extraction technique of mercury species involved the use of 2-mercaptoethanol as ion-pair reagent. The limits of detection for Hg²⁺, PhHg⁺, MeHg⁺, and Me₂Hg were 1, 40, 68, and 99 ng L⁻¹ with a relative standard deviation of 1.5, 3.1, 4.7 and 5.8%, respectively. Calibration curve was linear with a correlation factor equal to 0.9995. The method was successfully applied to the determination of the mercury species in two Antarctic materials: IRMM 813 (Adamussium colbecki) and MURST-ISS-A2 (Antarctic Krill).     

Tracer studies on dinoflagellate luciferin with [N]-glycine and [N]-l-glutamic acid in the dinoflagellate Pyrocystis lunula

The bioluminescence of dinoflagellate is a typical luciferin-luciferase reaction. To clarify the biosynthesis of dinoflagellate luciferin, we performed a feeding experiment with [¹⁵N]-glycine and [¹⁵N]-l-glutamic acid in the dinoflagellate Pyrocystis lunula. In a control experiment, we also examined whether or not chlorophyll a was incorporated with these labeled compounds. We detected by mass spectrometry the incorporation of [¹⁵N]-glycine and [¹⁵N]-l-glutamic acid into the four tetrapyrrole rings of the luciferin. In the control experiment, chlorophyll a was also incorporated with [¹⁵N]-glycine and [¹⁵N]-l-glutamic acid. Our results show that either glycine or glutamic acid could be the original component of dinoflagellate luciferin as well as chlorophyll a in the dinoflagellate P. lunula.     

Marine bacterial inhibitors from the sponge-derived fungus Aspergillus sp.

Chromatographic separation of a crude extract obtained from the fungus Aspergillus sp., isolated from the Mediterranean sponge Tethya aurantium, yielded a new tryptophan derived alkaloid, 3-((1-hydroxy-3-(2-methylbut-3-en-2-yl)-2-oxoindolin-3-yl)methyl)-1-methyl-3,4-dihydrobenzo[e][1,4]diazepine-2,5-dione (1), and a new meroterpenoid, austalide R (2), together with three known compounds (3–5). The structures of the new compounds were unambiguously elucidated on the basis of extensive one and two-dimensional NMR (¹H, ¹³C, COSY, HMBC, and ROESY) and mass spectral analysis. Interestingly, the compounds exhibited antibacterial activity when tested against a panel of marine bacteria, with 1 selectively inhibiting Vibrio species and 2 showing a broad spectrum of activity. In contrast, no significant activity was observed against terrestrial bacterial strains and the murine cancer cell line L5178Y.     

Structure and X-ray conformation of pseudodesmins A and B, two new cyclic lipodepsipeptides from Pseudomonas bacteria

Two new cyclic lipodepsipeptides named pseudodesmins A and B have been isolated from Pseudomonas bacteria collected from the mucus layer in the skin of the black belly salamander. Both compounds show moderate antibacterial activity against Gram positive bacteria, including MRSA. Complete ¹H, ¹³C and ¹⁵N NMR assignment of both compounds afforded their covalent structure and served to guide the analysis of LC-MS and X-ray diffraction data from which the final stereochemistry could be established. Both molecules can be categorized as new members of the viscosin group of cyclic lipodepsipeptides.