Adsorption of DNA onto gold nanoparticles and graphene oxide: surface science and applications

The interaction between DNA and inorganic surfaces has attracted intense research interest, as a detailed understanding of adsorption and desorption is required for DNA microarray optimization, biosensor development, and nanoparticle functionalization. One of the most commonly studied surfaces is gold due to its unique optical and electric properties. Through various surface science tools, it was found that thiolated DNA can interact with gold not only via the thiol group but also through the DNA bases. Most of the previous work has been performed with planar gold surfaces. However, knowledge gained from planar gold may not be directly applicable to gold nanoparticles (AuNPs) for several reasons. First, DNA adsorption affinity is a function of AuNP size. Second, DNA may interact with AuNPs differently due to the high curvature. Finally, the colloidal stability of AuNPs confines salt concentration, whereas there is no such limit for planar gold. In addition to gold, graphene oxide (GO) has emerged as a new material for interfacing with DNA. GO and AuNPs share many similar properties for DNA adsorption; both have negatively charged surfaces but can still strongly adsorb DNA, and both are excellent fluorescence quenchers. Similar analytical and biomedical applications have been demonstrated with these two surfaces. The nature of the attractive force however, is different for each of these. DNA adsorption on AuNPs occurs via specific chemical interactions but adsorption on GO occurs via aromatic stacking and hydrophobic interactions. Herein, we summarize the recent developments in studying non-thiolated DNA adsorption and desorption as a function of salt, pH, temperature and DNA secondary structures. Potential future directions and applications are also discussed.     

Electrografting of amino-TEMPO on graphene oxide and electrochemically reduced graphene oxide for electrocatalytic applications

4-Amino-2,2,6,6-tetramethyl-1-piperridine N-oxyl (4-amino-TEMPO), an electroactive nitroxide radical, was attached to the surface of graphene oxide (GO) and electrochemically reduced graphene oxide (ERGO) modified glassy carbon electrode by a simple, rapid and green electrografting method. The electroactive interfaces were analyzed by X-ray photoelectron spectroscopy (XPS) and cyclic voltammetry (CV). The calculated surface coverage for 4-amino-TEMPO is up to 1.55 × 10^− 9 mol·cm^− 2. The modified electroactive interface exhibited excellent electrocatalytic activity towards the electro-oxidation of reduced glutathione (GSH) and hydrogen peroxide (H₂O₂).     

Mechanism of lateral interactions between molecules adsorbed on oxide surfaces

Comparison of the observed and calculated values for static and dynamic frequency shifts due to lateral interactions between CO molecules adsorbed on oxides indicates that these interactions are indirect and performed through a solid. Mechanism of static interaction includes relaxation, i.e. the displacement of surface atoms due to their adsorption.

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Environmental applications of graphene oxide composite membranes

Graphene oxide (GO) has been widely used in the modification of membranes due to its excellent properties, i.e., huge specific surface area, good electrical conductivity, good hydrophilicity and various functional groups. The addition of GO in membranes were proved to exhibit improved properties in water permeability, molecular selectivity, membrane fouling mitigation and contaminants decomposition. Recently, the development of laminated GO in membranes achieved both high selectivity and high water permeability, conquering the limitations of conventional polymeric or inorganic membranes. By analyzing the separation mechanisms and the performance of GO composite membranes, this review systematically summarized the applications of GO composite membranes in three highlighted areas of environmental fields: desalination, gas separation and wastewater treatment, with challenges discussed faced with GO composite membranes.     

On the structure and desorption dynamics of DNA bases adsorbed on gold: a temperature-programmed study

The structure and desorption dynamics of mono- and multilayer samples of adenine, cytosine, guanine, and thymine on polycrystalline gold thin films are studied using temperature-programmed desorption-infrared reflection absorption spectroscopy (TPD-IRAS) and temperature-programmed desorption-mass spectroscopy (TPD-MS). It is shown that the pyrimidines, adenine and guanine, adsorb to gold in a complex manner and that both adhesive (adenine) and cohesive (guanine) interactions contribute the apparent binding energies to the substrate surface. Adenine displays at least two adsorption sites, including a high-energy site (210 degrees C, approximately 136 kJ/mol), wherein the molecule coordinates to the gold substrate via the NH2 group in an sp3-like, strongly perturbed, nonplanar configuration. The purines, cytosine and thymine, display a less complicated adsorption/desorption behavior. The desorption energy for cytosine (160 degrees C, approximately 122 kJ/mol) is similar to those obtained for adenine and guanine, but desorption occurs from a single site of dispersed, nonaggregated cytosine. Thymine desorbs also from a single site but at a significantly lower energy (100 degrees C, approximately 104 kJ/mol). Infrared data reveal that the monolayer architectures discussed herein are structurally very different from those observed for the bases in the bulk crystalline state. It is also evident that both pyrimidines and purines adsorb on gold with the plane of the molecule in a nonparallel orientation with respect to the substrate surface. The results of this work are discussed in the context of improving the understanding of the design of capturing oligonucleotides or DNA strands for bioanalytical applications, in particular, for gold nanoparticle-based assays.     

Preparation,chemical features,structure and applications of membrane materials based on graphene oxide

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Supramolecular block copolymers: graphene oxide composites for memory device applications

Bistable resistive switching characteristics obtained using a supramolecular hybrid route to hydrogen-bonded block copolymers (BCP) and graphene oxide (GO) as charge storage materials are reported for write-once-read-many-times (WORM) memory devices.     

NHC-Pd complex heterogenized on graphene oxide for cross-coupling reactions and supercapacitor applications

N-heterocyclic carbene (NHC)-palladium(II) complex (GO@NHC-Pd) was synthesized on graphene oxide (GO) support via a simple and cost-effective multistep approach. The spectroscopic, microscopic, thermal, and surface analyses of GO@NHC-Pd confirmed the successful formation of the catalyst. The investigation of catalytic activity showed that GO@NHC-Pd was very effective in Suzuki–Miyaura as well as Hiyama cross-coupling. Being heterogeneous in nature, GO@NHC-Pd was recovered after each reaction cycle easily and reused for up to nine and six cycles in Suzuki–Miyaura and Hiyama cross-coupling, respectively, without significant loss of activity. Further exploration of the supercapacitor performance of GO@NHC-Pd catalyst assembled in a two-electrode cell configuration shown a maximum attained capacitance of 105.26 F/g at a current density of 0.1 A/g with good cycling stability of 96.89% over 2,500 cycles.     

Interactions of DNA with graphene and sensing applications of graphene field-effect transistor devices: A review

Graphene field-effect transistors (GFET) have emerged as powerful detection platforms enabled by the advent of chemical vapor deposition (CVD) production of the unique atomically thin 2D material on a large scale. DNA aptamers, short target-specific oligonucleotides, are excellent sensor moieties for GFETs due to their strong affinity to graphene, relatively short chain-length, selectivity, and a high degree of analyte variability. However, the interaction between DNA and graphene is not fully understood, leading to questions about the structure of surface-bound DNA, including the morphology of DNA nanostructures and the nature of the electronic response seen from analyte binding. This review critically evaluates recent insights into the nature of the DNA graphene interaction and its affect on sensor viability for DNA, small molecules, and proteins with respect to previously established sensing methods. We first discuss the sorption of DNA to graphene to introduce the interactions and forces acting in DNA based GFET devices and how these forces can potentially affect the performance of increasingly popular DNA aptamers and even future DNA nanostructures as sensor substrates. Next, we discuss the novel use of GFETs to detect DNA and the underlying electronic phenomena that are typically used as benchmarks for characterizing the analyte response of these devices. Finally, we address the use of DNA aptamers to increase the selectivity of GFET sensors for small molecules and proteins and compare them with other, state of the art, detection methods.     

Synthesis and applications of graphene oxide aerogels in bone tissue regeneration: a review

Development of biocompatible porous supports is a promising strategy in the field of tissue engineering for the repair and regeneration of bone tissues with severe damage. Graphene oxide aerogels (GOAs) are excellent candidates for the manufacture of these systems due to their porosity, ability to imitate bone structure, and mechanical resistance, and according to their surface chemical reactivity, they can facilitate osseointegration, osteogenesis, osteoinduction and osteoconduction. In this review, synthesis of GOAs from the most primary source is described, and recent studies on the use of these functionalized carbonaceous foams as scaffolding for bone tissue regeneration are presented.     

Nitric oxide adsorbed on zeolites: EPR studies

CW-EPR studies of NO adsorbed on sodium ion-exchanged zeolites were focused on the geometrical structure of NO monoradical and (NO)2 biradical formed on zeolites. The EPR spectrum of NO monoradical adsorbed on zeolite can be characterized by the three different g-tensor components and the resolved y-component hyperfine coupling with the 14N nucleus. Among the g-tensor components, the value of g(zz) is very sensitive to the local environment of zeolite and becomes a measure of the electrostatic field in zeolite. The temperature dependence of the g-tensor demonstrated the presence of two states of the Na-NO adduct, in rigid and rotational states. The EPR spectra of NO adsorbed on alkaline metal ion-exchanged zeolite and their temperature dependency are essentially the same as that on sodium ion-exchanged zeolite. On the other hand, for NO adsorbed on copper ion-exchanged zeolite it is known that the magnetic interaction between NO molecule and paramagnetic copper ion are observable in the spectra recorded at low temperature. The signals assigned to (NO)2 biradical were detected for EPR spectrum of NO adsorbed on Na-LTA. CW-EPR spectra as well as their theoretical calculation suggested that the two NO molecules are aligned along their N-O bond axes. A new procedure for automatical EPR simulation is described which makes it possible to analyze EPR spectrum easily. In the last part of this paper, some instances when other nitrogen oxides were used as a probe molecule to characterize the zeolite structure, chemical properties of zeolites, and dynamics of small molecules were described on the basis of selected literature data reported recently.     

Recent progress in applications of graphene oxide for gas sensing: A review

This paper is a review of the recent progress on gas sensors using graphene oxide (GO). GO is not a new material but its unique features have recently been of interest for gas sensing applications, and not just as an intermediate for reduced graphene oxide (RGO). Graphene and RGO have been well known gas-sensing materials, but GO is also an attractive sensing material that has been well studied these last few years. The functional groups on GO nanosheets play important roles in adsorbing gas molecules, and the electric or optical properties of GO materials change with exposure to certain gases. Addition of metal nanoparticles and metal oxide nanocomposites is an effective way to make GO materials selective and sensitive to analyte gases. In this paper, several applications of GO based sensors are summarized for detection of water vapor, NO₂, H₂, NH₃, H₂S, and organic vapors. Also binding energies of gas molecules onto graphene and the oxygenous functional groups are summarized, and problems and possible solutions are discussed for the GO-based gas sensors.     

A review on elastic graphene aerogels: Design,preparation, and applications

Graphene aerogels with unique properties, such as ultralow density, super-elasticity, high specific surface area, and excellent thermal stability, have undergone great progress in the past decades. Especially, super-elastic graphene aerogels provide a highly attention-catching platform for developing advanced energy devices, pressure sensors, contaminates adsorbents, and electromagnetic wave shielding and absorption materials, and so forth. In this review, we begin with the introduction and discussion of various fabrication techniques and compare their advantages and disadvantages, focusing on the template-free assembly process and template-assisted assembly process. Then, we summarize the factors influencing the compressibility and elasticity of graphene aerogels, including intrinsic properties of building blocks, constituent materials, and structure design, and their wide applications. At the end, we discuss the current challenges and future prospects of this field.     

Ultrasonic route synthesis,characterization and electrochemical study of graphene oxide and reduced graphene oxide

Research on Chemical Intermediates - In this study, an efficient route for graphene oxide (GO) and reduced GO (RGO) synthesis was developed by using an ultrasonic probe and bath alternatively. RGO...     

Oxidizing metal ions with graphene oxide: the in situ formation of magnetic nanoparticles on self-reduced graphene sheets for multifunctional applications

Fe(2+) cations in FeCl(2) or FeSO(4) were oxidized by graphene oxide, leading to an in situ deposition of Fe(3)O(4) nanoparticles onto the self-reduced graphene oxide (rGO) sheets. The resultant Fe(3)O(4)/rGO sheets were demonstrated to possess interesting magnetic and electrochemical properties attractive for a large variety of potential applications.     

Effect of adsorbed species on hydrogen desorption from niobium

Surface-controlled hydrogen permeation experiments were carried out on niobium under conditions such that the permeation of hydrogen was controlled by the surface reactions at the exit surface. Particular attention was paid to the effects of structure and chemistry on these surface reactions and hence on the permeation rate. Structural defects were introduced in the near-surface region by irradiation with low energy argon ions. Traps which were introduced by this process were shown to decrease the lattice diffusivity of hydrogen in the near-surface region by introducing hydrogen traps with binding energies of 10–100 kJ (mol H)₋₁. The effects of the adsorption of oxygen, nitrogen, chlorine, SO₂, CO and H₂S on the exit surface were studied. The observed decreases in the hydrogen permeation rates were interpreted on the basis of a desorption model in which the adsorbed species served to block surface sites from participating in the hydrogen desorption process. A model which describes the kinetics of permeation and desorption under these surface-controlled conditions was developed.     

Green synthesis of Copper oxide nanoparticles decorated with graphene oxide for anticancer activity and catalytic applications

Nanotechnology is an embryonic field that grips countless impacts on the drug delivery system. Nanoparticles as haulers increase the capability of target-specific drug delivery to many folds hence are used in the treatment of dreadful diseases such as cancer, diabetes, etc. This boom has aimed at, to synthesize Copper oxide nanoparticles (CuO-NPs) using Acalypha Indica leaf extract and then incorporated with graphene oxide (GO) to form GO-CuO nanocomposites. Secondly, to sightsee the photocatalytic activity of CuO-NPs and GO-CuO nanocomposites towards the decolorization of methylene blue-dye and to test its activity against HCT-116 Human colon cancer cell lines. Synthesized nanocomposites were characterized using FTIR, UV–vis, X-ray powder diffraction (XRD), scanning electron microscopy (SEM), energy dispersive X-ray analysis (EDAX), X-ray Photoelectron Spectroscopy (XPS) and transmission electron microscopy (TEM) analysis. The photocatalytic studies revealed that synthesized nanocomposites have the efficiency to degrade methylene blue dye by 83.20% and cytotoxic activity was found to be 70% against HCT-116 Human colon cancer cell lines at 100 μg/ml. GO-CuO nanocomposites have appreciable activity towards cancer cell lines and photocatalytic activity when compared to nanoparticles as such.     

Facile synthesis of cobalt oxide/reduced graphene oxide composites for electrochemical capacitor and sensor applications

Reduced graphene oxide sheets decorated with cobalt oxide nanoparticles (Co₃O₄/rGO) were produced using a hydrothermal method without surfactants. Both the reduction of GO and the formation of Co₃O₄ nanoparticles occurred simultaneously under this condition. At the same current density of 0.5 A g⁻¹, the Co₃O₄/rGO nanocomposites exhibited much a higher specific capacitance (545 F g⁻¹) than that of bare Co₃O₄ (100 F g⁻¹). On the other hand, for the detection of H₂O₂, the peak current of Co₃O₄/rGO was 4 times higher than that of Co₃O₄. Moreover, the resulting composite displayed a low detection limit of 0.62 μM and a high sensitivity of 28,500 μA mM⁻¹cm⁻² for the H₂O₂ sensor. These results suggest that the Co₃O₄/rGO nanocomposite is a promising material for both supercapacitor and non-enzymatic H₂O₂ sensor applications.     

Isocyanide ligands adsorbed on metal surfaces: applications in catalysis, nanochemistry, and molecular electronics

Knowledge of the coordination chemistry and reactivity of isocyanide ligands in transition-metal complexes forms the basis for understanding the adsorption and reactions of isocyanides on metal surfaces. In this overview, we explore reactions (often catalytic) of isocyanides adsorbed on metal surfaces that reflect their patterns of reactivity in metal complexes. We also examine applications of isocyanide adsorption to the stabilization of metal nanoparticles, the functionalization of metal electrodes, and the creation of conducting organic-metal junctions in molecule-scale electronic devices.     

A simple fluorometric assay for DNA exonuclease activity based on graphene oxide

A new assay platform for DNA exonuclease activity is developed based on the preferential binding of single-stranded DNA (ssDNA) over double-stranded DNA (dsDNA) to graphene oxide. This approach allows a simple and quantitative activity measurement in a short time at low cost.