Conformational equilibria of trans -3-X-cyclohexanols (X = Cl, Br, CH3 and OCH3). A low temperature NMR study and theoretical calculations

The integration of 1H and 13C NMR spectra, at - 90 degrees C in CS2/CD2Cl2 (9:1), for the trans-3-chlorocyclohexanol (1), trans-3-bromocyclohexanol (2), and trans-3-methoxycyclohexanol (4) showed that the equatorial-axial (ea) conformer occurs as ca 63, 63, and 69% in the conformational equilibrium, respectively. This corresponds to the following DeltaG(ea-ae) values (from (1)H spectrum): - 0.32 +/- 0.01, - 0.32 +/- 0.04, - 0.48 +/- 0.05 kcal mol(-1); and to (from 13C spectrum): - 0.31 +/- 0.04, - 0.35 +/- 0.05, and - 0.44 +/- 0.01 kcal mol(-1), respectively, in very good agreement within both series. Thus, although bromine is bulkier than chlorine, the 1,3-diaxial steric effects are similar in these equilibria. However, the integration of (1)H NMR spectrum for the trans-3-methylcyclohexanol (3) gave 90% of the 3ae conformer in the equilibrium, at - 90 degrees C on CS2/CD2Cl2 (9:1), corresponding to a DeltaG(ea-ae) value of 1.31 +/- 0.02 kcal mol(-1). The values obtained through the additivity rule, with data from monosubstituted cyclohexanes (DeltaG(Ad) = DeltaG(X) + DeltaG(OH)), for compounds 1, 2, and 4 (-0.37 +/- 0.15, - 0.34 +/- 0.09, and - 0.46 +/- 0.04 kcal mol(-1), respectively) are in very good agreement with the experimental values, but it is significantly smaller for compound 3 (0.79 +/- 0.02 kcal mol(-1)). Theoretical calculations through different levels of theory (HF/6-311 + g**, B3LYP/6-311 + g**, MP2/6-31 + g**, and CBS-4M) showed that CBS-4M is the best method for the study of conformational equilibria for these systems, since it provides DeltaG(ea-ae) values similar to the experimental values.     

Three empirical correlations connecting gaseous cluster energies and solvation energies of alkali metal and halide ions.

This paper gives two empirical correlations of formation Gibbs energies of gaseous clusters DeltaG(f)n as function of number of solvent molecules attached to the ion, n, and one correlation connecting the DeltaG(f)n for each individual cluster with the total DeltaG(o)hydr value. The experimental ratios of DeltaG(f)2/DeltaG(f)1 and DeltaG(f)3/DeltaG(f)1 for both alkali metal and halide ions are on average equal to 0.75 and 0.5, respectively. DeltaG(f)n values for n > or = 4 are correlated with n as DeltaG(f)n = [a/(n - 1)] DeltaG(f)1 + b DeltaG(f)1. For all available data on cluster energies and each individual cluster, the DeltaG(f)n's are straight-line functions of DeltaG(o)hydr. This well corresponds to another empirical rule stating that the Gibbs energies of transfer of ions between two solvents are often as well straight-line functions of DeltaG(o)(hydr) [J. Rais and T. Okada, J. Phys. Chem. A, 2000, 104, 7314]. Tentative models of the found behavior are proposed. A full data set of the gaseous cluster energies of formation based on inclusion of new, usually not used entries from the literature is provided.     

Thermochemistry of the hypobromous and hypochlorous acids, HOBr and HOCl

The enthalpies of formation of HOBr and HOCl have been estimated by employing coupled cluster theory in conjunction with the correlation consistent basis sets and corrections for core-valence, relativistic, and anharmonic effects. We have employed three different reactions to estimate the DeltaH(o)(f,298)(HOBr), namely, the atomization reaction and two homodesmic reactions. Our best estimation is DeltaH(o)(f,298) (HOBr) = -15.3 +/- 0.6 kcal/mol and is very likely to lie toward the more negative values. The present value is 1.4 kcal/mol lower than the widely used experimental determination of Ruscic and Berkowitz (J. Chem. Phys. 1994, 101, 7795), DeltaH(o)(f,298)(HOBr) > -13.93 +/- 0.42 kcal/mol. However, it is closer to the more recent measurement of Lock et al. (J. Phys. Chem. 1996, 100, 7972), DeltaH(o)(f,298)(HOBr) = -14.8 +/- 1 kcal/mol. In the case of HOCl we have determined DeltaH(o)(f,298)(HOCl) = -18.1 +/- 0.3 kcal/mol, just in the middle of the two experimental values proposed, -17.8 +/- 0.5 kcal/mol (JANAF), obtained from equilibrium constant measurements, and -18.36 +/- 0.03 kcal/mol (Joens, J. A. J. Phys. Chem. A 2001, 105, 11041), determined from the measurements of the Cl-OH bond energy. If our conclusions are correct, several enthalpies of formation that have been determined by experimental chemists, Orlando and Burholder (J. Phys. Chem. 1995, 99, 1143), and theoretical chemists, Lee (J. Phys. Chem. 1995, 99, 15074), need to be revised, since a larger value was used for DeltaH(o)(f,298)(HOBr). Employing the results obtained by Orlando and Burkholder for Br(2)O we propose DeltaH(o)(f,298)(Br(2)O) = 24.9 +/- 0.6 kcal/mol, and employing Lee's enthalpies of reaction we propose the following DeltaH(o)(f,298): for BrBrO, HBrO, ClOBr, ClBrO, BrClO, BrCN, BrNC, BrNO, BrON, FOBr, and FBrO, 39.5 +/- 1, 41.0 +/- 1, 22.7 +/- 1.5, 34.2 +/- 1.5, 40.9 +/- 1.5, 43.7 +/- 1.5, 80.1 +/- 1.5, 22.3 +/- 1, 46.2 +/- 1, 17.3 +/- 1.5, and 6.3 +/- 1.5 kcal/mol, respectively. We expect that this work will stimulate new experimental measurements of the thermodynamic properties of HOBr and HOCl.     

Conformational analysis of indole alkaloids corynantheine and dihydrocorynantheine by dynamic 1H NMR spectroscopy and computational methods: steric effects of ethyl vs vinyl group

1H NMR (400 MHz) spectra of the indole alkaloid dihydrocorynantheine recorded at room temperature show the presence of two conformers near coalescence. Low temperature 1H NMR allowed characterization of the conformational equilibrium, which involves rotation of the 3-methoxypropenoate side chain. Line-shape analysis yielded enthalpy of activation DeltaH(double dagger) = 71 +/- 6 kJ/mol, and entropy of activation DeltaS(double dagger) = 33 +/- 6 J/mol.K. The major and minor conformation contains the methyl ether group above and below the plane of the ring, respectively, as determined by low-temperature NOESY spectra, with free energy difference DeltaG degrees = 1.1 kJ/mol at -40 degrees C. In contrast to dihydrocorynantheine, the corresponding rotamers of corynantheine are in the fast exchange limit at room temperature. The activation parameters determined for corynantheine were DeltaH(double dagger) = 60 +/- 6 kJ/mol and DeltaS(double dagger) = 24 +/- 6 J/mol.K, with DeltaG degrees = 1.3 kJ/mol at -45 degrees C. The difference in the exchange rates of the rotamers of corynantheine and dihydrocorynantheine (respectively, 350 s(-1) and 9 s(-1) at 0 degrees C) reflects the difference in the steric bulk of the vinyl and the ethyl group. The conformational equilibria involving the side chain rotation as well as inversion of the bridgehead nitrogen in corynantheine and dihydrocorynantheine was studied by force-field (Amber and MMFF) and ab initio (density-functional theory at the B3LYP/6-31G level) computational methods, the results of which were in good agreement with the 1H NMR data. However, the calculations identified the rotamers as essentially isoenergetic, the experimental energy differences being to small to be reproduced exactly by the theory. Comparison of density-functional and force-field calculations with experimental results identified Amber as giving the most accurate results in the present case.     

Ab initio treatment of the chemical reaction precursor complex Cl(2P)-HF. 2. Bound states and infrared spectrum

Bound energy levels and properties of the Cl(2P)-HF complex were obtained from full three-dimensional (3D) calculations, with the use of the ab initio computed diabatic potential surfaces from the preceding paper and the inclusion of spin-orbit coupling. For a better understanding of the dynamics of this complex we also computed a 2D model in which the HF bond length r was frozen at the vibrationally averaged values r0 and r1 and a 2 + 1D model in which the 3D potentials were averaged over the v(HF) = 0 and v(HF) = 1 vibrational wave functions of free HF. Also 1D calculations were made in which both r and the Cl-HF distance R were frozen. The complex is found to have the linear hydrogen bonded Cl-HF structure, with ground-state quantum numbers J = 3/2 for the overall angular momentum and /omega/ = 3/2 for its projection on the intermolecular axis R. The binding energy is D0 = 432.25 cm(-1) for v(HF) = 0 and D0 = 497.21 cm(-1) for v(HF) = 1. Bending modes with /omega/ = 1/2 and /omega/ = 5/2 are split by the Renner-Teller effect, since the electronic ground state is a degenerate 2pi state. A series of intermolecular (R) stretch modes was identified. Rotational constants and e-f parity splittings were extracted from the levels computed for J = 1/2 to 7/2. The computed red shift of the HF stretch frequency of 64.96 cm(-1) and the 35Cl-37Cl isotope shift of 0.033 cm(-1) are in good agreement with the values of 68.77 and 0.035 cm(-1) obtained from the recent experiment of Merritt et al. (Phys. Chem. Chem. Phys. 2005, 7, 67), after correction for the effect of the He nanodroplet matrix in which they were measured.     

A theoretical study of P4O10: vibrational analysis, infrared and Raman spectra

The normal mode frequencies and the corresponding vibrational assignments of tetraphosphorus decaoxide (P4O10) in tetrahedral (Td) symmetry are examined theoretically and experimentally. The Gaussian 98 set of quantum chemistry codes at the HF/6-311G*, MP2/6-311G*, and DFT/B3LYP/6-311G* levels of theory are used. By comparison to experimental normal mode frequencies deduced by Gilliam et al. [J. Phys. Chem. B 107 (2003) 2892], Chapman [Spectrochim. Acta A, 24 (1968) 1687], Beattie et al. [J. Chem. Soc. A (1970) 449], Konings et al. [J. Mol. Spectrosc. 152 (1992) 29] and the present work, correction factors for predominant vibrational motions are determined and compared. Normal modes were decomposed into five non-redundant motions (P-O stretch, P=O stretch, P-O-P bend, P-O-P wag, and P=O wag). Standard deviations found for the HF, MP2, and DFT corrected frequencies compared to experiment are 9, 5, and 4 cm(-1), respectively. Electron distribution for selected molecular orbitals is considered.     

Quantum Monte Carlo calculations of the dissociation energy of the water dimer

We report diffusion quantum Monte Carlo (DMC) calculations of the equilibrium dissociation energy D(e) of the water dimer. The dissociation energy measured experimentally, D(0), can be estimated from D(e) by adding a correction for vibrational effects. Using the measured dissociation energy and the modern value of the vibrational energy Mas et al., [J. Chem. Phys. 113, 6687 (2000)] leads to D(e)=5.00+/-0.7 kcal mol(-1), although the result Curtiss et al., [J. Chem. Phys. 71, 2703 (1979)] D(e)=5.44+/-0.7 kcal mol(-1), which uses an earlier estimate of the vibrational energy, has been widely quoted. High-level coupled cluster calculations Klopper et al., [Phys. Chem. Chem. Phys. 2, 2227 (2000)] have yielded D(e)=5.02+/-0.05 kcal mol(-1). In an attempt to shed new light on this old problem, we have performed all-electron DMC calculations on the water monomer and dimer using Slater-Jastrow wave functions with both Hartree-Fock approximation (HF) and B3LYP density functional theory single-particle orbitals. We obtain equilibrium dissociation energies for the dimer of 5.02+/-0.18 kcal mol(-1) (HF orbitals) and 5.21+/-0.18 kcal mol(-1) (B3LYP orbitals), in good agreement with the coupled cluster results.     

Infrared laser spectroscopy of CH3...HF in helium nanodroplets: The exit-channel complex of the F + CH4 reaction

High-resolution infrared laser spectroscopy is used to study the CH3...HF and CD3...HF radical complexes, corresponding to the exit-channel complex in the F + CH4 --> HF + CH3 reaction. The complexes are formed in helium nanodroplets by sequential pickup of a methyl radical and a HF molecule. The rotationally resolved spectra presented here correspond to the fundamental v = 1 <-- 0 H-F vibrational band, the analysis of which reveals a complex with C(3v) symmetry. The vibrational band origin for the CH3...HF complex (3797.00 cm(-1)) is significantly redshifted from that of the HF monomer (3959.19 cm(-1)), consistent with the hydrogen-bonded structure predicted by theory [E. Ya. Misochko et al., J. Am. Chem. Soc. 117, 11997 (1995)] and suggested by previous matrix isolation experiments [M. E. Jacox, Chem. Phys. 42, 133 (1979)]. The permanent electric dipole moment of this complex is experimentally determined by Stark spectroscopy to be 2.4+/-0.3 D. The wide amplitude zero-point bending motion of this complex is revealed by the vibrational dependence of the A rotational constant. A sixfold reduction in the line broadening associated with the H-F vibrational mode is observed in going from CH3...HF to CD3...HF. The results suggest that fast relaxation in the former case results from near-resonant intermolecular vibration-vibration (V-V) energy transfer. Ab initio calculations are also reported (at the MP2 level) for the various stationary points on the F + CH4 surface, including geometry optimizations and vibrational frequency calculations for CH3...HF.     

Anharmonic vibrational frequencies and vibrationally averaged structures and nuclear magnetic resonance parameters of FHF-

The anharmonic vibrational frequencies of FHF(-) were computed by the vibrational self-consistent-field, configuration-interaction, and second-order perturbation methods with a multiresolution composite potential energy surface generated by the electronic coupled-cluster method with various basis sets. Anharmonic vibrational averaging was performed for the bond length and nuclear magnetic resonance indirect spin-spin coupling constants, where the latter computed by the equation-of-motion coupled-cluster method. The calculations placed the vibrational frequencies at 580 (nu(1)), 1292 (nu(2)), 1313 (nu(3)), 1837 (nu(1) + nu(3)), and 1864 cm(-1) (nu(1) + nu(2)), the zero-point H-F bond length (r(0)) at 1.1539 A, the zero-point one-bond spin-spin coupling constant [(1)J(0)(HF)] at 124 Hz, and the bond dissociation energy (D(0)) at 43.3 kcal/mol. They agreed excellently with the corresponding experimental values: nu(1) = 583 cm(-1), nu(2) = 1286 cm(-1), nu(3) = 1331 cm(-1), nu(1) + nu(3) = 1849 cm(-1), nu(1) + nu(2) = 1858 cm(-1), r(0) = 1.1522 A, (1)J(0)(HF) = 124+/-3 Hz, and D(0) = 44.4+/-1.6 kcal/mol. The vibrationally averaged bond lengths matched closely the experimental values of five excited vibrational states, furnishing a highly dependable basis for correct band assignments. An adiabatic separation of high- (nu(3)) and low-frequency (nu(1)) stretching modes was examined and found to explain semiquantitatively the appearance of a nu(1) progression on nu(3). Our calculations predicted a value of 186 Hz for experimentally inaccessible (2)J(0)(FF).     

Adsorption and thermodynamic characteristics of Hg(II)-SCN complex onto polyurethane foam

The sorption of Hg(II) in the presence of sodium thiocyanate solution onto polyurethane (PUR) foam, an excellent sorbent, has been investigated in detail. Maximum sorption of Hg(II) is achieved from 0.1 M hydrochloric acid solution containing 7.5x10(-2) M sodium thiocyanate in 5 min. The sorption data followed both Freundlich and Langmuir adsorption isotherms. The Freundlich constants 1/n and sorption capacity, C(m), are evaluated to be 0.44+/-0.02 and (3.86+/-0.89)x10(-3) mol g(-1). The saturation capacity and adsorption constant derived from Langmuir isotherm are (6.88+/-0.28)x10(-5) mol g(-1) and (5.6+/-0.37)x10(4) dm(3) mol(-1) respectively. The mean free energy (E) of Hg(II)-SCN sorption onto PUR foam computed from D-R isotherm is 12.4+/-0.3 kJ mol(-1) indicating ion-exchange type mechanism of chemisorption. The variation of sorption with temperature yields thermodynamic parameters of DeltaH=-30.7+/-1.2 kJ mol(-1), DeltaS=-70.1+/-4.1 J mol(-1) K(-1) and DeltaG=-9.86+/-0.77 kJ mol(-1) at 298 K. The negative value of enthalpy and free energy reflects the exothermic and spontaneous nature of sorption. On the basis of the sorption data, sorption mechanism has been proposed.     

Rate constants and H atom branching ratios of the gas-phase reactions of methylidyne CH(X2Pi) radical with a series of alkanes

The reactions of the CH radical with several alkanes were studied, at room temperature, in a low-pressure fast-flow reactor. CH(X2Pi, v = 0) radicals were obtained from the reaction of CHBr(3) with potassium atoms. The overall rate constants at 300 K are (0.76 +/- 0.20) x 10(-10) [Fleurat-Lessard, P.; Rayez, J. C.; Bergeat, A.; Loison, J. C. Chem. Phys. 2002, 279, 87],1 (1.60 +/- 0.60) x 10(-10)[Galland, N.; Caralp, F.; Hannachi, Y.; Bergeat, A.; Loison, J.-C. J. Phys. Chem. A 2003, 107, 5419],2 (2.20 +/- 0.80) x 10(-10), (2.80 +/- 0.80) x 10(-10), (3.20 +/- 0.80) x 10(-10), (3.30 +/- 0.60) x 10(-10), and (3.60 +/- 0.80) x 10(-10) cm3 molecule(-1) s(-1), (errors refer to +/-2sigma) for methane, ethane, propane, n-butane, n-pentane, neo-pentane, and n-hexane respectively. The experimental overall rate constants correspond to those obtained using a simple classical capture theory. Absolute atomic hydrogen production was determined by V.U.V. resonance fluorescence, with H production from the CH + CH4 reaction being used as a reference. Observed H branching ratios were for CH4, 1.00[Fleurat-Lessard, P.; Rayez, J. C.; Bergeat, A.; Loison, J. C. Chem. Phys. 2002, 279, 87];1 C(2)H(6), 0.22 +/- 0.08 [Galland, N.; Caralp, F.; Hannachi, Y.; Bergeat, A.; Loison, J.-C. J. Phys. Chem. A 2003, 107, 5419];2 C(3)H(8), 0.19 +/- 0.07; C(4)H(10) (n-butane), 0.14 +/- 0.06; C(5)H(12) (n-pentane), 0.52 +/- 0.08; C(5)H(12) (neo-pentane), 0.51 +/- 0.08; C(5)H(12) (iso-pentane), 0.12 +/- 0.06; C(6)H(14) (n-hexane), 0.06 +/- 0.04.     

Theoretical calculation of the pKa values of some drugs in aqueous solution

In this work, calculations of pK_a values have been performed on benzoic acid and its para‐substituted derivatives and some drugs by using Gaussian 98 software package. Gas‐phase energies were calculated with HF/6‐31 G** and B3LYP/6‐31 G** levels of theory. Free energies of solvation have been computed using the polarizable continuum model (PCM), conductor‐like PCM (CPCM), and the integral equation formalism‐PCM at the same levels which have been used for geometry determination in the gas‐phase. The results that show the calculated pK_a values using the B3LYP are better than those using the corresponding HF. In comparison to the other models, the results obtained indicate that the PCM model is a suitable solvation model for calculating pK_a values. For the investigated compounds, a good agreement between the experimental and the calculated pK_a values was also observed. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Melting temperature of ice Ih calculated from coexisting solid-liquid phases

We carried out molecular-dynamics simulations by using the two-phase coexistence method with the constant pressure, particle number, and enthalpy ensemble to compute the melting temperature of proton-disordered hexagonal ice I(h) at 1-bar pressure. Four models of water were considered, including the widely used TIP4P [W. L. Jorgensen, J. Chandrasekha, J. D. Madura, R. W. Impey, and M. L. Klein, J. Chem. Phys.79, 926 (1983)] and TIP5P [M. W. Mahoney and W. L. Jorgensen J. Chem. Phys.112, 8910 (2000)] models, as well as recently improved TIP4P and TIP5P models for use with Ewald techniques-the TIP4P-Ew [W. Horn, W. C. Swope, J. W. Pitera, J. C. Madura, T. J. Dick, G. L. Hura, and T. Head-Gordon, J. Chem. Phys.120, 9665 (2004)] and TIP5P-Ew [S. W. Rick, J. Chem. Phys.120, 6085 (2004)] models. The calculated melting temperature at 1 bar is T(m) = 229 +/- 1 K for the TIP4P and T(m) = 272.0 +/- 0.6 K for the TIP5P ice I(h), both are consistent with previous simulations based on free-energy methods. For the TIP4P-Ew and TIP5P-Ew models, the calculated melting temperature is T(m) = 257.0 +/- 1.1 K and T(m) = 253.9 +/- 1.1 K, respectively.     

Solvation in octanol: parametrization of the continuum MST model

This study reports the parametrization of the HF/6‐31G(d) version of the MST continuum model for n‐octanol. Following our previous studies related to the MST parametrization for water, chloroform, and carbon tetrachloride, a detailed exploration of the definition of the solute/solvent interface has been performed. To this end, we have exploited the results obtained from free energy calculations coupled to Monte Carlo simulations, and those derived from the QM/MM analysis of solvent‐induced dipoles for selected solutes. The atomic hardness parameters have been determined by fitting to the experimental free energies of solvation in octanol. The final MST model is able to reproduce the experimental free energy of solvation for 62 compounds and the octanol/water partition coefficient (log P_ow) for 75 compounds with a root‐mean‐square deviation of 0.6 kcal/mol and 0.4 (in units of log P), respectively. The model has been further verified by calculating the octanol/water partition coefficient for a set of 27 drugs, which were not considered in the parametrization set. A good agreement is found between predicted and experimental values of log P_o/w, as noted in a root‐mean‐square deviation of 0.75 units of log P. © 2001 John Wiley & Sons, Inc. J Comput Chem 22: 1180–1193, 2001     

Some Thermodynamic Data on Copper-Chitin and Copper-Chitosan Biopolymer Interactions

Chitin and chitosan are good removers of cations from aqueous solution and wastewater. The interactive effect of cation with both biopolymers in aqueous medium was studied by the batch method at 298 +/- 1 K. The results were fitted to the modified Langmuir equation. The same adsorption was followed by calorimetric titration. In this process, 50.0 mg of each polymer was suspended in 19.0 cm3 of bidistilled water at 298.15 +/- 0.02 K, maintained under mechanical turbine stirring. The titration was performed by adding increments of 10 μL of 0.10 mol dm-3 Cu(NO3)2 aqueous solution to the system. The resulting isotherm was also adjusted to a modified Langmuir equation. From the thermal effects K and DeltaH values were determined, enabling the calculation of DeltaG and DeltaS for the interaction of copper cations with chitin and chitosan, giving the enthalpic values of -19.85 +/- 0.34 and -41.27 +/- 1.57 kJ mol-1, respectively. The spontaneity of this interaction is shown from DeltaG values of -35.9 +/- 0.1 and -36.8 +/- 0.1 kJ mol-1, which are followed by DeltaS values of +54 and of -15 J mol-1 K-1, respectively. The complexation is probably associated with the lack of order of the chitin polymeric chain or with the freedom of water molecules initially bonded to cations. The copper ion is coordinated to the pendant groups of the polymeric chain to form stable complexes. Copyright 1999 Academic Press.     

Photochemical and thermal reactions of intermediates in the phenylnitrene rearrangement inside a hemicarcerand

Broadband irradiation (lambda > 320 nm) of hemicarceplex H(.)1 between -74 degrees C and -84 degrees C, produces encapsulated didehydroazepine (2), triplet phenylnitrene ((3)PN), 2-azabicyclo[3.2.0]hepta-1,3,6-triene (6), and 4-azaspiro[2.4]hepta-1,4,6-triene (7). The highly strained anti-Bredt imine 6 is formed from 2 via a photochemical four-electron electrocyclization. Under the irradiation conditions, 6 rearranges further to azaspirene 7. In addition, 6 thermally rearranges to 7 via a 1,5-sigmatropic shift (DeltaG(267K) = 20.0 +/- 0.5 kcal/mol), yielding a final equilibrium composed of [7]/[6] = 5 at room temperature. The observation of a photochemical rearrangement of 2 to 6 contrasts earlier results of narrow band irradiations (lambda = 334 nm) of matrix-isolated 2, which gave (3)PN (Hayes, J. C.; Sheridan, R. S. J. Am. Chem. Soc. 1990, 112, 5879-5881). Encapsulated (3)PN is remarkably stable due to the prevention of its dimerization by the surrounding hemicarcerand. Above 255 K, it slowly decays with a rate constant k = 10(7.7+/-0.4) s(-1) x exp {(13300 +/- 500 cal/mol)/RT}. The isolation of substantial amounts of a hemicarcerand lacking one acetal spanner suggests that (3)PN decays preferentially by inserting into an inward-pointing acetal C-H bond of H.     

Thermodynamic parameters for the binding of inorganic and organic anions by biogenic polyammonium cations

Thermodynamic parameters for the interaction of protonated biogenic polyamines with inorganic or organic polyanions were studied potentiometrically (H(+)-glass electrode) and calorimetrically, at 25 degrees C. No background salt was used in the measurements to avoid interferences, and the formation constants and formation enthalpies were extrapolated to zero ionic strength. Species formed are ALH(r) [L=Cl(-), SO(4)(2-), HPO(4)(2-), P(2)O(7)(4-) and P(3)O(10)(5-); tartrate, malate, citrate, glutamate, 1,2,3-propanetricarboxylate, 1,2,3,4-butanetetracarboxylate], with r=1,2...(n+m-2) and r=1,2...(n+m-1) for inorganic and organic ligands, respectively (n, m=maximum degree of protonation of amine and ligand, respectively). The stability of the various species formed is a function of charges involved in the formation reaction. DeltaH(0) values are generally positive, and therefore these complexes are entropically stabilized. Results are discussed in connection with several previously reported data on similar systems. DeltaG(0) and TDeltaS(0) follow a linear trend as a function of polyammonium cation and inorganic or carboxylic anion charges. DeltaG(0) and TDeltaS(0) charge relationships are reported. In particular, mean values of DeltaG(0) and TDeltaS(0) for single interaction were calculated: DeltaG(0)=7.0 kJ mol(-1) n(-1), TDeltaS(0)=9.1 kJ mol(-1) n(-1) and DeltaG(0)=5.7 kJ mol(-1) n(-1) and TDeltaS(0)=8.7 kJ mol(-1) n(-1), for the species of inorganic and organic polyanions, respectively (n=number of possible salt bridges). A linear relationship was also found for TDeltaS(0) versus DeltaG(0), whose equation is TDeltaS(0)=-7-1.39 DeltaG(0) (with r=0.9409; r, correlation coefficient). The body of correlations found for these thermodynamic parameters shows quite good predictive value.     

Thermodynamics of Inter- and Intramolecular Hydrogen Bonding in (Diphosphine)platinum(II) Diolate Complexes and Its Role in Carbohydrate Complexation Regioselectivity

Thermodynamic data are reported for intermolecular hydrogen-bonding association of 1 and 2 equiv of phenol with [1,3-bis(diphenylphosphino)propane](phenylethane-1,2-diolato)platinum(II) ((dppp)Pt(Ped)) in dichloromethane solution: = -7.0 +/- 0.1 kcal/mol, = -7.7 +/- 0.4 kcal/mol, = -11.3 +/- 0.4 eu, and = -17.8 +/- 1.2 eu. For comparison, the thermodynamics for hydrogen bonding of phenol to triphenylphosphine oxide in dichloromethane were also determined: DeltaH degrees = -5.1 +/- 0.3 kcal/mol; DeltaS degrees = -8.8 +/- 1.0 eu. Competitive coordination exchange reactions have been used to determine the apparent intramolecular hydrogen bond strengths in (dppp)Pt(1,2-O,O'-glycerolate) and (dppp)Pt(1,2-O,O'-butane-1,2,4-triolate) in both dichloromethane (DeltaG(313) = -2.05 +/- 0.05 and -2.52 +/- 0.06 kcal/mol, respectively) and pyridine (DeltaG(313) = -0.62 +/- 0.03 and -0.82 +/- 0.03 kcal/mol, respectively). Based on these findings, the role of hydrogen-bonding interactions in determining the regioselectivities of complexation of carbohydrates to diphosphine Pt(II) is discussed.     

Mechanistic investigation of the oxygen-atom-transfer reactivity of dioxo-molybdenum(VI) complexes

The oxygen-atom-transfer (OAT) reactivity of [LiPrMoO2(OPh)] (1, LiPr=hydrotris(3-isopropylpyrazol-1-yl)borate) with the tertiary phosphines PEt3 and PPh2Me in acetonitrile was investigated. The first step, [LiPrMoO2(OPh)]+PR3-->[LiPrMoO(OPh)(OPR3)], follows a second-order rate law with an associative transition state (PEt3, DeltaH not equal=48.4 (+/-1.9) kJ mol-1, DeltaS not equal=-149.2 (+/-6.4) J mol-1 K-1, DeltaG not equal=92.9 kJ mol-1; PPh2Me, DeltaH not equal=73.4 (+/-3.7) kJ mol-1, DeltaS not equal=-71.9 (+/-2.3) J mol-1 K-1, DeltaG not equal=94.8 kJ mol-1). With PMe3 as a model substrate, the geometry and the free energy of the transition state (TS) for the formation of the phosphine oxide-coordinated intermediate were calculated. The latter, 95 kJ mol-1, is in good agreement with the experimental values. An unexpectedly large O-P-C angle calculated for the TS suggests that there is significant O-nucleophilic attack on the P--C sigma* in addition to the expected nucleophilic attack of the P on the Mo==O pi*. The second step of the reaction, that is, the exchange of the coordinated phosphine oxide with acetonitrile, [LiPrMoO(OPh)(OPR3)]+MeCN-->[LiPrMoO(OPh)(MeCN)]+OPR3, follows a first-order rate law in MeCN. A dissociative interchange (Id) mechanism, with activation parameters of DeltaH not equal=93.5 (+/-0.9) kJ mol-1, DeltaS not equal=18.2 (+/-3.3) J mol-1 K-1, DeltaG not equal=88.1 kJ mol-1 and DeltaH not equal=97.9 (+/-3.4) kJ mol-1, DeltaS not equal=47.3 (+/-11.8) J mol-1 K-1, DeltaG not equal=83.8 kJ mol-1, for [LiPrMoO(OPh)(OPEt3)] (2 a) and [LiPrMoO(OPh)(OPPh2Me)] (2 b), respectively, is consistent with the experimental data. Although gas-phase calculations indicate that the Mo--OPMe3 bond is stronger than the Mo--NCMe bond, solvation provides the driving force for the release of the phosphine oxide and formation of [LiPrMoO(OPh)(MeCN)] (3).     

Gas-phase thermochemical properties of pyrimidine nucleobases

The gas-phase acidity and proton affinity of thymine, cytosine, and 1-methyl cytosine have been examined using both theoretical (B3LYP/6-31+G*) and experimental (bracketing, Cooks kinetic) methods. This paper represents a comprehensive examination of multiple acidic sites of thymine and cytosine and of the acidity and proton affinity of thymine, cytosine, and 1-methyl cytosine. Thymine exists as the most stable "canonical" tautomer in the gas phase, with a DeltaH(acid) of 335 +/- 4 kcal mol(-1) (DeltaG(acid) = 328 +/- 4 kcal mol(-1)) for the more acidic N1-H. The acidity of the less acidic N3-H site has not, heretofore, been measured; we bracket a DeltaH(acid) value of 346 +/- 3 kcal mol(-1) (DeltaG(acid) = 339 +/- 3 kcal mol(-1)). The proton affinity (PA = DeltaH) of thymine is measured to be 211 +/- 3 kcal mol(-1) (GB = DeltaG = 203 +/- 3 kcal mol(-1)). Cytosine is known to have several stable tautomers in the gas phase in contrast to in solution, where the canonical tautomer predominates. Using bracketing methods in an FTMS, we measure a DeltaH(acid) for the more acidic site of 342 +/- 3 kcal mol(-1) (DeltaG(acid) = 335 +/- 3 kcal mol(-1)). The DeltaH(acid) of the less acidic site, previously unknown, is 352 +/- 4 kcal mol(-1) (345 +/- 4 kcal mol(-1)). The proton affinity is 228 +/- 3 kcal mol(-1) (GB = 220 +/- 3 kcal mol(-1)). Comparison of these values to calculations indicates that we most likely have a mixture of the canonical tautomer and two enol tautomers and possibly an imine tautomer under our conditions in the gas phase. We also measure the acidity and proton affinity of cytosine using the extended Cooks kinetic method. We form the proton-bound dimers via electrospray of an aqueous solution, which favors cytosine in the canonical form. The acidity of cytosine using this method is DeltaH(acid) = 343 +/- 3 kcal mol(-1), PA = 227 +/- 3 kcal mol(-1). We also examined 1-methyl cytosine, which has fewer accessible tautomers than cytosine. We measure a DeltaH(acid) of 349 +/- 3 kcal mol(-1) (DeltaG(acid) = 342 +/- 3 kcal mol(-1)) and a PA of 230 +/- 3 kcal mol(-1) (GB = 223 +/- 3 kcal mol(-1)). Our ultimate goal is to understand the intrinsic reactivity of nucleobases; gas-phase acidic and basic properties are of interest for chemical reasons and also possibly for biological purposes because biological media can be quite nonpolar.