Applications and limitations of deuterium labeling methods to neutron scattering studies of polymers

Deuterium labeling techniques have been widely used to study polymer chain configuration and motion, based on the assumption that the H- and D- chains are thermodynamically identical and that the interaction parameter between them, X_HD is zero. By an appropriate choice of the degree of polymerization and temperature, both critical scattering and phase separation can be made to occur, due solely to the small but finite thermodynamic differences between protonated and deuterated molecules. These experiments helped delineate the range of validity of the assumptions which had been used hitherto in neutron scattering studies of polymers. The majority of previous experiments, carried out at modest molecular weights, have been shown to be in large part unaffected by such effects.     

Anhydrous deuterium β-alumina: Powder neutron diffraction studies at 4.2, 298, 573, and 720 K

The structure of anhydrous stoichiometric deuterium β-alumina, Dal₁₁O₁₇, has been determined at 4.2, 298, 573, and 720 K by profile refinement of powder neutron diffraction data. At each temperature the deuterium is found to lie in well-defined threefold sites close to the spacer oxygen, O(5). There is no evidence for delocalization of the deuterium away from O(5) and such a hydroxyl linkage is in accord with the low protonic conductivity observed in related materials. The effect of this unusual mirror-plane arrangement on the remainder of the structure and the variation with temperature of the lattice constants, bond lengths, and angles are discussed.     

Molecular tweezers for hydrogen: synthesis, characterization, and reactivity

The first ansa-aminoborane N-TMPN-CH2C6H4B(C6F5)2 (where TMPNH is 2,2,6,6-tetramethylpiperidinyl) which is able to reversibly activate H2 through an intramolecular mechanism is synthesized. This new substance makes use of the concept of molecular tweezers where the active N and B centers are located close to each other so that one H2 molecule can fit in this void and be activated. Because of the fixed geometry of this ansa-ammonium-borate it forms a short N-H...H-B dihydrogen bond of 1.78 A as determined by X-ray analysis. Therefore, the bound hydrogen can be released above 100 degrees C. In addition, the short H...H contact and the N-H...H (154 degrees) and B-H...H (125 degrees) angles show that the dihydrogen interaction in N-TMPNH-CH2C6H4BH(C6F5)2 is partially covalent in nature. As a basis for discussing the mechanism, quantum chemical calculations are performed and it is found that the energy needed for splitting H2 can arise from the Coulomb attraction between the resulting ionic fragments, or "Coulomb pays for Heitler-London". The air- and moisture-stable N-TMPNH-CH2C6H4BH(C6F5)2 is employed in the catalytic reduction of nonsterically demanding imines and enamines under mild conditions (110 degrees C and 2 atm of H2) to give the corresponding amines in high yields.     

Molecular hydrogen occupancy in binary THF-H2 clathrate hydrates by high resolution neutron diffraction

We have determined the time-space average filling of hydrogen molecules in a binary tetrahydrofuran (THF)-d(8) + D(2) sII clathrate hydrate using high resolution neutron diffraction. The filling of hydrogen in the lattice of a THF-d(8) clathrate hydrate occurred upon pressurization. The hydrogen molecules were localized in the small dodecahedral cavities at 20 K, with nuclear density from the hydrogen approximately spherically distributed and centered in the small cavity. With a formation pressure of 70 MPa, molecular hydrogen was found to only singly occupy the sII small cavity. This result helps explain discrepancies about the hydrogen occupancy in the THF binary hydrate system.     

Atomistic structure of a micelle in solution determined by wide Q-range neutron diffraction

The accepted picture of the structure of a micelle in solution arises from the idea that the surfactant molecules self-assemble into a spherical aggregate, driven by the conflicting affinity of their head and tail groups with the solvent. It is also assumed that the micelle's size and shape can be explained by simple arguments involving volumetric packing parameters and electrostatic interactions. By using wide Q-range neutron diffraction measurements of H/D isotopically substituted solutions of decyltrimethylammonimum bromide (C(10)TAB) surfactants, we are able to determine the complete, atomistic structure of a micelle and its surroundings in solution. The properties of the micelle we extract are in agreement with previous experimental studies. We find that ~45 surfactant molecules aggregate to form a spherical micelle with a radius of gyration of 14.2 ? and that the larger micelles are more ellipsoidal. The surfactant tail groups are hidden away from the solvent to form a central dry hydrophobic core. This is surrounded by a disordered corona containing the surfactant headgroups, counterions, water, and some alkyl groups from the hydrophobic tails. We find a Stern layer of 0.7 bromide counterion per surfactant molecule, in which the bromide counterions maintain their hydration shells. The atomistic resolution of this technique provides us with unprecedented detail of the physicochemical properties of the micelle in its solvent.     

Calcium hydride and deuteride studied by neutron diffraction and NMR

The structure of CaD₂ has been redetermined by neutron diffraction and the structure has been confirmed by NMR measurements. However, the interpretation of the NMR measurements is not easy. The unsymmetrical position of the hydrogen (deuterium) atoms and the large range of interatomic distances lead to complicated spectra. Since the spectra for both the hydride and the deuteride seem to be determined mainly by dipolar interactions, one can conclude that the electric field gradient at the D sites must be very small. Line narrowing above 440°K is ascribed to proton diffusion with an activation enthalpy of 17.4 kcal/mol.     

Vapor-phase photochemistry of methyl- and cyanopyridines: deuterium labeling studies

The three isomeric methylpyridines and the three isomeric cyanopyridines each constitute a photochemical triad. Irradition of each methylpyridine or each cyanopyridine in the vapor phase at 254 nm results in the formation of the other two isomers as primary photoproducts. Dideuteration of the 2-substituted or 3-substituted methyl or cyanopyridines expanded each triad to a pentad. Due to symmetry, 2,6-dideuteration of 4-methyl-or 4-cyanopyridine did not expand the triad. Trideuteration of 4-methylpyridine removed this symmetry and resulted in a photochemical pentad. These results are consistent with a mechanism involving 2,6-photocylization, migration of nitrogen around the five sides of the cyclopentenyl ring, and rearomatization. This mechanism exactly predicts the observed distribution of deuterium in the photoproducts.     

Dimesitylborane monomer-dimer equilibrium in solution, and the solid-state structure of the dimer by single crystal neutron and X-ray diffraction

Dimesitylborane dimer has been shown to exist in equilibrium with dimesitylborane monomer in solution. This equilibrium has been investigated by variable concentration and variable temperature multinuclear NMR spectroscopy and values for the dissociation constant, enthalpy and entropy of dissociation were found to be K_diss=(3.2±0.4)×10⁻³ M, ΔH=70 kJ mol⁻¹, and ΔS=212 J K⁻¹mol⁻¹, respectively. Ab initio methods have been used to investigate the gas-phase structures and energies of both monomer and dimer, and calculated ¹¹B-NMR shifts are also presented. The solid-state structure of dimesitylborane dimer has been investigated by single crystal X-ray diffraction at 100 K and the position of the bridging hydrogen atoms (B---H=1.340(2), 1.342(2) Å, H---B---H=92.46(14)°) has been determined accurately, for the first time, by single crystal neutron diffraction at 20 K.     

Analysis of surface structure and hydrogen/deuterium exchange of colloidal silica suspension by contrast-variation small-angle neutron scattering

The microscopic surface structure and hydrogen/deuterium exchange effect were investigated by contrast-variation small-angle neutron scattering (CV-SANS) for three different-sized amorphous colloidal silica aqueous suspensions. The results show that the fraction of hydrogen/deuterium exchange per nanoparticle, phiH/D, strongly depends on the size of silica nanoparticles. This finding supports that the hydrogen/deuterium exchange occurs exclusively within a finite surface layer of silica nanoparticles, while the inner component remained unchanged. Detailed analyses of the scattering intensity functions led to the estimation of (1) phiH/D and (2) the thickness of the surface layer as functions of the particle radius. The surface layer thickness was found to increase from 18 to 35 A with decreasing the particle radius from 165 to 71.2 A. The surface area per unit weight of silica estimated with the CV-SANS results are comparable to those reported in the literature.     

Structure, stoichiometry and transport properties of lithium copper nitride battery materials: combined NMR and powder neutron diffraction studies

A combined NMR and neutron diffraction study has been carried out on three Li(3-x-y)Cu(x)N materials with x=0.17, x=0.29 and x=0.36. Neutron diffraction indicates that the samples retain the P6/mmm space group of the parent Li(3)N with Cu located only on Li(1) sites. The lattice parameters vary smoothly with x in a similar fashion to Li(3-x-y)Ni(x)N, but the Li(2) vacancy concentration for the Cu-substituted materials is negligible. This structural model is confirmed by wideline (7)Li NMR spectra at 193 K which show three different local environments for the Li(1) site, resulting from the substitution of neighbouring Li atoms in the Li(1) layer by Cu. Since the Cu-substituted materials are only very weakly paramagnetic, variable temperature (7)Li wideline NMR spectra can be used to measure diffusion coefficients and activation energies. These indicate anisotropic Li(+) diffusion similar to the parent Li(3)N with transport confined to the [Li(2)N] plane at low temperature and exchange between Li(1) and Li(2) sites dominant at high temperature. For the intra-layer process the diffusion coefficients at room temperature are comparable to Li(3)N and Li(3-x-y) Ni(x)N, while E(a) decreases as x increases in contrast to the opposite trend in Ni-substituted materials. For the inter-layer process E(a) decreases only slightly as x increases, but the diffusion coefficients at room temperature increase rapidly with x.     

Low-temperature neutron diffraction structures of N-glycoprotein linkage models and analogues: structure refinement and trifurcated hydrogen bonds

The biological addition of oligosaccharide moieties to asparagine residues of N-glycoproteins influences the properties and bioactivities of these macromolecules. The low-temperature neutron crystal structures of three N-glycoprotein linkage models and analogues provide accurate characterization of the three-dimensional structure of the conserved GlcNAc-Asn linkage. These first crystal structures of N-acetylated carbohydrates obtained by neutron diffraction provide high-resolution geometrical parameters that can be used for force-field parametrization and subsequent molecular dynamics simulation of N-glycoproteins. The correct localization of hydrogen atoms demonstrates the occurrence of trifurcated hydrogen bonds and hydrophobic contacts.     

Methane hydrate formation and decomposition: structural studies via neutron diffraction and empirical potential structure refinement

Neutron diffraction studies with hydrogen/deuterium isotope substitution measurements are performed to investigate the water structure at the early, medium, and late periods of methane clathrate hydrate formation and decomposition. These measurements are coupled with simultaneous gas consumption measurements to track the formation of methane hydrate from a gas/water mixture, and then the complete decomposition of hydrate. Empirical potential structure refinement computer simulations are used to analyze the neutron diffraction data and extract from the data the water structure in the bulk methane hydrate solution. The results highlight the significant changes in the water structure of the remaining liquid at various stages of hydrate formation and decomposition, and give further insight into the way in which hydrates form. The results also have important implications on the memory effect, suggesting that the water structure in the presence of hydrate crystallites is significantly different at equivalent stages of forming compared to decomposing. These results are in sharp contrast to the previously reported cases when all remaining hydrate crystallites are absent from the solution. For these systems there is no detectable change in the water structure or the methane hydration shell before hydrate formation and after decomposition. Based on the new results presented in this paper, it is clear that the local water structure is affected by the presence of hydrate crystallites, which may in turn be responsible for the "history" or "memory" effect where the production of hydrate from a solution of formed and then subsequently melted hydrate is reportedly much quicker than producing hydrate from a fresh water/gas mixture.     

Structure and dynamics of ND3BF3 in the solid and gas phases: a combined NMR,neutron diffraction,and Ab initio study

The decrease in D-->A bond lengths, previously reported for some Lewis acid/base complexes, in going from the gas to the solid phases is investigated by obtaining an accurate crystal structure of solid ND(3)BF(3) by powder neutron diffraction. The B-N internuclear distance is 1.554(3) A, 0.118 A shorter than the most recent gas-phase microwave value and 0.121 A shorter than the single molecule geometry optimized (1.672 A, CISD/6-311++G(d,p)) bond length. The crystal structure also shows N-D.F-B hydrogen bonds. The effects of this change in structure and of intermolecular hydrogen-bonding on nuclear magnetic shielding (i.e., chemical shifts) and the nuclear quadrupolar coupling constants (QCC) are investigated by ab initio molecular orbital and density functional theory calculations. These calculations show that the nitrogen ((15)N and (14)N) and boron ((11)B and (10)B) chemical shifts should be rather insensitive to changes in r(BN) and that the concomitant changes in molecular structure. Calculations on hydrogen-bonded clusters, based on the crystal structure, indicate that H-bonding should also have very little effect on the chemical shifts. On the other hand, the (11)B and (14)N QCCs show large changes because of both effects. An analysis of the (10)B[(19)F] line shape in solid ND(3)(10)BF(3) yields a (11)B QCC of +/-0.130 MHz. This is reasonably close an earlier value of +/-0.080 MHz and the value of +/-0.050 MHz calculated for a [NH(3)BF(3)](4) cluster. The gas-phase value is 1.20 MHz. Temperature-dependent deuterium T(1) measurements yield an activation energy for rotation of the ND(3) group in solid ND(3)BF(3) of 9.5 +/- 0.1 kJ/mol. Simulations of the temperature-dependent T(1) anisotropy gave an E(a) of 9.5 +/- 0.2 kJ/mol and a preexponential factor, A, of 3.0 +/- 0.1 x 10(12) s(-)(1). Our calculated value for a [NH(3)BF(3)](4) cluster is 16.4 kJ/mol. Both are much higher than the previous value of 3.9 kJ/mol, from solid-state proton T(1) measurements.     

Molecular recognition in molecular tweezers systems: quantum-chemical calculation of NMR chemical shifts

Quantum-chemical calculations for molecular tweezers systems are presented, where the focus is not only on the recognition process in the host-guest systems, but on the self aggregation of the tweezers host as well. Such intermolecular interactions influence the corresponding NMR spectra strongly by up to 6 ppm for proton chemical shifts, since ring-current effects are particularly important. The quantum-chemical results allow one to reliably assign the spectra and to gain information both on the structure and on the importance of intra- and intermolecular interactions. In addition, we study the accuracy of a variety of density functionals for describing the present host-guest systems, where we observe a considerable underestimation of ring-current effects on (1)H NMR chemical shifts at the density functional theory (DFT) level using smaller basis sets such as 6-31G**, so that larger bases like TZP are required. This stands in contrast to the behavior of the Hartree-Fock scheme, where small basis sets, such as 6-31G**, provide reliable (1)H NMR shieldings for molecular tweezers systems.     

Proton and deuterium NMR of hydrogen bonds: Relationship between isotope effects and the hydrogen bond potential

The difference in chemical shift between hydrogen bonded protons and deuterons has been examined both theoretically and experimentally. It is shown that valuable information about the hydrogen bond potential can be extracted from this isotope effect on chemical shifts.     

Membrane insertion of a lipidated ras peptide studied by FTIR,solid-state NMR,and neutron diffraction spectroscopy

Membrane binding of a doubly lipid modified heptapeptide from the C-terminus of the human N-ras protein was studied by Fourier transform infrared, solid-state NMR, and neutron diffraction spectroscopy. The 16:0 peptide chains insert well into the 1,2-dimyristoyl-sn-glycero-3-phosphocholine phospholipid matrix. This is indicated by a common main phase transition temperature of 21.5 degrees C for both the lipid and peptide chains as revealed by FTIR measurements. Further, (2)H NMR reveals that peptide and lipid chains have approximately the same chain length in the liquid crystalline state. This is achieved by a much lower order parameter of the 16:0 peptide chains compared to the 14:0 phospholipid chains. Finally, proton/deuterium contrast variation of neutron diffraction experiments indicates that peptide chains are localized in the membrane interior analogous to the phospholipid chains. In agreement with this model of peptide chain insertion, the peptide part is localized at the lipid-water interface of the membrane. This is revealed by (1)H nuclear Overhauser enhancement spectra recorded under magic angle spinning conditions. Quantitative cross-peak analysis allows the examination of the average location of the peptide backbone and side chains with respect to the membrane. While the backbone shows the strongest cross-relaxation rates with the phospholipid glycerol, the hydrophobic side chains of the peptide insert deeper into the membrane interior. This is supported by neutron diffraction experiments that reveal a peptide distribution in the lipid-water interface of the membrane. Concurring with these experimental findings, the amide protons of the peptide show strong water exchange as seen in NMR and FTIR measurements. No indications for a hydrogen-bonded secondary structure of the peptide backbone are found. Therefore, membrane binding of the C-terminus of the N-ras protein is mainly due to lipid chain insertion but also supported by interactions between hydrophobic side chains and the lipid membrane. The peptide assumes a mobile and disordered conformation in the membrane. Since the C-terminus of the soluble part of the ras protein is also disordered, we hypothesize that our model for membrane binding of the ras peptide realistically describes the membrane binding of the lipidated C-terminus of the active ras protein.     

Molecular aspects of polymer network deformation - small angle neutron scattering and NMR studies

Poly(1,4-butadiene) networks obtained by a 4-functional random cross-linking reaction over a broad range of polymer concentration were studied by small angle neutron scattering(SANS), ²H NMR and Monte Carlo(MC) simulation in the isotropic and uniaxially deformed state. The defect structure of the networks has been characterized by MC simulation of the cross-linking reaction. The anisotropy of the radius of gyration in deformed networks determined from SANS has been analyzed by the theory of Ullman. It was found that the number of active cross-links per chain is in agreement with MC and that the chain deformation follows phantom behaviour. The local orientation as measured by ²H NMR is related to the global anisotropy of the network by a MC calculation of oriented chains. The ²H NMR line shape of the deformed network is analyzed in terms of two relaxation processes arising from interior parts of the chains and from segments at chain ends. The mobility of both decrease with strain. It was found that the orientation connected to the first process shows the classical strain dependence of rubber elasticity, whereas the second exhibits a weaker dependence on strain.