Key tricyclic synthetic intermediates for the preparation of the sesquiterpenes α- and β-cedrene

A completely novel and direct route towards the synthesis of the natural sesquiterpenes α-cedrene and β-cedrene delivered the compounds (3β,3aβ,7β)-(±)-6,6-ethyl­ene­dioxy-3,8,8-tri­methyl-2,3,3a,4,5,6,7,8-octa­hydro-3a,7-methano­azulen-2-one, C₁₆H₂₂O₃, and (3β,3aβ,7β,8aα)-(±)-6,6-ethyl­ene­dioxy-3,8,8-tri­methyl-1,2,3,3a,4,5,6,7,8,8a-deca­hydro-3a,7-methano­azulen-2-one, C₁₆H₂₄O₃, at key stages of the preparative programme. Structural elucidation showed the latter compound to have added an H atom to the same face of the cyclo­pentenone ring as that occupied by the methyl substituent, and also allowed correct isomer identification for further reaction.     

Three 1,6-anhydro-β-d-glycopyranose derivatives

Two of the title compounds, 1,6-an­hydro-2,3-O-(S)-benzyl­idene-β-d -manno­pyran­ose, C₁₃H₁₄O₅, (I), and 1,6-an­hydro-4-O-benzyl-β-d -manno­pyran­ose, C₁₃H₁₆O₅, (II), are derived from β-d -manno­pyran­ose, while the third, 1,6-an­hydro-3,4-O-(S)-benzyl­idene-β-d -galacto­pyran­ose, C₁₃H₁₄O₅, (III), is derived from β-d -galacto­pyran­ose. In the crystal packing, each hydroxyl group is involved in O—H⃛O hydrogen bonds, where the acceptor group is the other hydroxyl group in (II), or the endocyclic O atoms of the dioxolane [in (I)], an­hydro [in (II)] or pyran­ose [in (III)] rings. Differences in the crystal packing arise from the contrasting O—H⃛O hydrogen-bonding environments.     

Hamigerin A and a hamigerin D decomposition product

The sponge Hamigera tarangaensis has yielded eight new compounds and we report here the structure of one of these compounds, hamigeran A, C₂₀H₂₅BrO₅, or methyl 7‐bromo‐4β,6‐di­hydroxy‐1β‐iso­propyl‐3aα,8‐di­methyl‐5‐oxo‐1a,3a,4,5‐tetra­hydro­cyclo­penta­[a]­naphthalene‐4‐carboxyl­ate, and the decomposition product of hamigeran D, C₂₁H₂₈BrNO₄, namely 2‐(8‐bromo‐2β,7‐di­methyl‐4‐oxo‐1,3α‐benzox­aza­n‐5‐yl)‐3‐iso­propylcyclo­pentyl­acetic acid.     

Conformational comparison of five follicular fluid meiosis-activating sterol-related active and inactive compounds

The crystal structures of five follicular fluid meiosis-activating sterol-related Δ^8,14-sterol compounds are presented. These are 4,4-di­methyl-23-phenyl-24-nor-5α-chola-8,14-dien-3β-ol, C₃₁H₄₄O, 4,4-di­methyl-22-phenyl-23,24-dinor-5α-chola-8,14-dien-3β-ol, C₃₀H₄₂O, (20R)-4,4-di­methyl-22-oxa-5α,20-chol­es­ta-8,14,24-trien-3β-ol, C₂₈H₄₄O₂, 4,4-di­methyl-23-phenyl-22-oxa-24-nor-5α-chola-8,14-dien-3β-ol–water (4/1), 4C₃₀H₄₂O₂·H₂O, and 4,4-di­methyl-5α-cholesta-8,14-dien-3-one, C₂₉H₄₆O. Two of the derivatives are inactive and three are active as agonists. Preliminary structure–activity relationship studies showed that the positions of the double bonds in the skeleton and the structures of the side chains are important determinants for activity. The conformations of the skeletons were compared with double-bond isomers retrieved from the Cambridge Structural Database [Allen & Kennard (1993). Chem. Des. Autom. News, 8 , 1, 31–37]; no significant differences were found. Thus, conformational changes induced by the double bonds are not discriminative with respect to the activity of the compounds. Comparisons of the side-chain conformations of active and inactive structures revealed that the crystal structures were not conclusive as far as correlation of conformation and activity of the side chains were concerned.     

(+)‐Gibberellin C: hydrogen‐bonding pattern of the monohydrate of a non‐racemic pentacyclic diterpenoid

In the monohydrate of the title compound, (+)‐2β,4aα‐di­hydroxy‐1,7‐di­methyl‐8‐oxo‐4bβ,7α‐gibbane‐1α,10β‐di­carb­ox­yl­ic acid‐1,4a‐lactone, C₁₉H₂₄O₆·H₂O, intermolecular hydrogen bonding progresses helically along b from carboxyl to ketone [O?O = 2.694 (5) Å]. The carboxyl and lactone carbonyl groups in translationally related mol­ecules within a helix both accept hydrogen bonds from the same water of hydration. The oxy­gen of this water in turn accepts a hydrogen bond from the hydroxyl group of a third screw‐related mol­ecule in an adjacent counterdirectionally oriented helix, yielding a complex three‐dimensional hydrogen‐bonding array. Intermolecular O?H—C close contacts were found to the carboxyl and lactone carbonyls, the hydroxyl, and the water.     

Synthesis of 3-Chloro-3-(trimethylsilyl)prop-2-enoic Acid Amides and Hydrazides from 3-(Trimethylsilyl)propynoic Acid

Russian Journal of Organic Chemistry - A number of previously unknown and difficultly accessible polyfunctional β-chloro-β-(trimethyl­silyl)prop-2-enoic acid amides and hydrazides...     

A silaproline‐containing dipeptide

The silaproline‐containing dipeptide N‐(3,3‐di­methyl‐1‐pivaloyl‐1‐aza‐3‐sila‐5‐cyclo­pentyl­carbonyl)‐l ‐alanine iso­propyl­amide, C₁₇H₃₃N₃O₃Si, has two independent molecules in the asymmetric unit and each adopts a β‐II folded conformation, where the amide on the terminal C interacts intramolecularly with the pivaloyl O atom. The five‐membered silaproline ring is C^β‐puckered, an infrequent conformation for the homol­ogous proline ring.     

Uncovering stereochemical relations in a compound with a stereogenic N—O axis: methyl 2‐(4‐methyl‐2‐thio­xo‐2,3‐di­hydro­thia­zol‐3‐yl­oxy)­propanoate

The geometry of racemic methyl 2‐(4‐methyl‐2‐thio­xo‐2,3‐di­hydro­thia­zol‐3‐yl­oxy)­propanoate, C₈H₁₁NO₃S₂, (I), is characterized by a distorted heterocyclic five‐membered ring and an enantiomorphic N‐alkoxy substituent, which is inclined at an angle of −68.8° to the thia­zole­thione plane in (M)‐(I). The unit cell consists of a 1:1 ratio of R,P‐ and S,M‐configured mol­ecules of (I). The combination of a P configuration at the N—O axis and an R configuration at the asymmetric propanoate C_β atom on one side, and an S,M configuration on the other side, is considered to originate from steric interactions. The largest substituent at the asymmetric propanoate C_β atom, i.e. the methoxycarbonyl group, resides above the methyl substituent; the medium‐sized propanoate γ‐methyl substituent points in the opposite direction with respect to the N—O bond, whereas the H atom is located above the C=S double bond of the thiazolethione subunit.     

A nitronyl nitro­xide complex of ­nickel(II) with nitrate as a ligand

The complex cation in [4,5-di­hydro-4,4,5,5-tetra­methyl-2-(2-pyridyl-κN)­imidazol-1-oxyl 3-oxide-κO³](nitrato-κ²O,O′)(N,N,N′,N′-tetra­methyl-1,2-ethanedi­am­ine-κ²N,N′)­nickel(II) hexafluorophosphate dichloromethane solvate, [Ni(NO₃)(C₆H₁₆N₂)(C₁₂H₁₆N₃O₂)]PF₆·CH₂Cl₂, is the first example of a nitro­nyl nitro­xide complex of a transition metal ion having d electrons in which nitrate is coordinated as a bidentate ligand. Owing to the smaller steric requirement of NO₃⁻, the Ni—­O(nitro­xide) bond length [2.014 (2) Å] is remarkably shorter than that in the corresponding ­β-­diketonate complexes [2.052 (4)–2.056 (2) Å].     

3β,7α,12α‐Tri­formyl­oxy‐24‐nor‐5β‐chol‐22‐ene

The title compound, alternatively called 24‐nor‐5β‐chol‐22‐ene‐3β,7α,12α‐triyl triformate, C₂₆H₃₈O₆, has a cis junction between two of the six‐membered rings. All three of the six‐membered rings have chair conformations that are slightly flattened and the five‐membered ring has a 13β,14α‐half‐chair conformation. The 3β, 7α and 12α ring substituents are axial and the 17β group is equatorial. The 3β‐formyl­oxy group is involved in one weak intermol­ecular C—H⋯O bond, which links the mol­ecules into dimers in a head‐to‐head fashion.     

The α‐ and β‐epoxides of 3β‐acet­oxy‐5α‐lanost‐9(11)‐en‐7‐one

The structures of 3β‐acet­oxy‐9α,11α‐ep­oxy‐5α‐lanost‐9(11)‐en‐7‐one and 3β‐acet­oxy‐9β,11β‐ep­oxy‐5α‐lanost‐9(11)‐en‐7‐one, C₃₂H₅₂O₄, differ in their respective substituted cyclo­hexa­none rings but adopt similar conformations in the other three rings. In both of the crystal structures, weak inter­molecular C—H⋯O inter­actions are present.     

16‐(4‐Cyano­benzyl­idene)‐17‐oxo­androst‐5‐en‐3β‐ol

In the title compound, 4‐(3β‐hydroxy‐17‐oxoandrost‐5‐en‐16‐ylidenemethyl)benzonitrile, C₂₇H₃₁NO₂, rings A and C of the steroid nucleus are in chair conformations. The central six‐membered ring B is in an 8β,9α‐half‐chair conformation, while the five‐membered ring D adopts a 13β,14α‐half‐chair conformation. The cyano­benzyl­idene moiety has an E configuration with respect to the carbonyl group at position C17. The dihedral angle between the planes of the steroid nucleus and the cyano­benzyl­idene moiety is 22.61 (15)°. Intermolecular O—H⃛N hydrogen bonds formed between the hydroxyl group of the steroid and the N atom of the cyano­benzyl­idene moiety of symmetry‐related mol­ecules link the steroid mol­ecules into chains which run parallel to the b axis.     

Polyether antibiotic CP44,161

The crystal structure of antibiotic CP44,161, 6-(7-{2-ethyl-2-[5-(1-hydroxy­methyl)-5-methyl-2,3,4,5-tetra­hydro-2-furyl]-4,10,-­12-tri­methyl-1,6,8-trioxadi­spiro­[4.1.5.3]­pentadec-13-en-9-yl}-4-hydroxy-3,5-di­methyl-6-oxononyl)-2-hydroxy-3-methyl­benzoic acid monohydrate, C₄₃H₆₆O₁₀·H₂O, has been determined by X-ray crystallography. The mol­ecule adopts a cyclic conformation, with a centrally located water mol­ecule contributing to the stability of the conformation through hydrogen-bonding interactions.     

Saponins from the roots of Chenopodium bonus-henricus L.

Two new glycosides of phytolaccagenin and 2β-hydroxyoleanoic acid, namely bonushenricoside A (3) and bonushenricoside B (5) together with four known saponins, respectively compounds 3-O-L-α-arabinopyranosyl-bayogenin-28-O-β-glucopyranosyl ester (1), 3-O-β-glucuronopyranosyl-2β-hydroxygypsogenin-28-O-β-glucopyranosyl ester (2), 3-O-β-glucuronopyranosyl-bayogenin-28-O-β-glucopyranosyl ester (4) and 3-O-β-glucuronopyranosyl-medicagenic acid-28-β-xylopyranosyl(1→4)-α-rhamnopyranosyl(1→2)-α-arabinopyranosyl ester (6) were isolated from the roots of Chenopodium bonus-henricus L. The structures of the compounds were determined by means of spectroscopic methods (1D and 2D NMR, IR and HRMS). The MeOH extract and compounds were tested for cytotoxic activity on five leukemic cell lines (HL-60, SKW-3, Jurkat E6-1, BV-173 and K-562). In addition, the ability of metanolic extract and saponins to modulate the interleukin-2 production in PHA/PMA stimulated Jurkat E6-1 cells was investigated as well.     

Some Diels–Alder adducts of 6-vinyl-1-oxa-4-thiaspiro[4.5]dec-6-ene

6-Vinyl-1-oxa-4-thia­spiro­[4.5]­dec-6-ene has been reacted with dienophiles, such as N-phenyl­male­imide (NPM), N-methyl­triazoline-2,5-dione (MTAD) and di­methyl­acetyl­ene di­carboxyl­ate (DMAD), to assess the 1,3-diastereofacial selection caused by the acetal function. In each case, a mixture of two diastereoisomers was produced. The crystal structures of the products of the addition of NPM and MTAD syn to the acetal oxy­gen, 2-phenyl-2,3,3a,4,5,5a,6,7,8,9,9a,9b-dodeca­hydro-1H-benz­[e]­iso­indole-6-spiro-2′-[1′,3′]­oxa­thiol­ane-1,3-dione, C₂₀H₂₁NO₃S, (IIa), and 2-methyl-5,7,8,9,10,10a-hexa­hydro-1H-1,2,4-triazolo­[1,2-a]­cinnoline-7-spiro-2′-[1′,3′]­oxa­thiol­ane-1,3-dione, C₁₃H₁₇N₃O₃S, (IIIa), respectively, and the product of the addition of DMAD syn to the acetal sulfur, di­methyl 1,2,3,4,4a,7-hexa­hydro­naphthalene-1-spiro-2′-[1′,3′]­oxa­thiol­ane-5,6-di­carboxyl­ate, C₁₆H₂₀O₅S, (IVb), have been determined. All three structures are composed of independent mol­ecules separated by normal van der Waals distances. The 1-oxa-4-thia heterocyclic ring has an envelope conformation in the three structures and the S—Csp³ bond distances differ significantly from each other, as observed in comparable structures; the remaining molecular dimensions are as expected.     

Full stereochemical understanding in a new (2R,3R,4R)-4-hydroxyisoleucine synthesis

We present the crystal and molecular structures of 2,3,6,7,8,8a-hexa­hydro-6,8-methano-7,7,8a-tri­methyl-3-(1-methyl-2-oxo­propyl­idene)-5H-1,4-benzoxazin-2-one, C₁₆H₂₁NO₃, (III), and 2,3,6,7,8,8a-hexa­hydro-3-(2-hydroxy-1-methyl­propyl)-6,8-methano-7,7,8a-tri­methyl-5H-1,4-benzoxazin-2-one, C₁₆H₂₅NO₃, (V). These compounds are two of the four key intermediates in our synthetic route to (2R,3R,4R)-4-hydroxy­isoleucine. The two structures provide a full understanding of the stereochemistry in successive steps. This synthesis was based on a new optically pure chiral oxazinone auxiliary derived from (1R,2R,5R)-2-hydroxy­pinan-3-one.     

Two trans‐4‐aminoazoxybenzenes

Two isomeric trans‐4‐amino­azoxy­benzenes, trans‐1‐(4‐amino­phenyl)‐2‐phenyl­diazene 2‐oxide (α, C₁₂H₁₁N₃O) and trans‐2‐(4‐amino­phenyl)‐1‐phenyl­diazene 2‐oxide (β, C₁₂H₁₁N₃O), have been characterized by X‐ray diffraction. The α isomer is almost planar, having torsion angles along the C_aryl—N bonds of only 4.9 (2) and 8.0 (2)°. The relatively short C_aryl—N bond to the non‐oxidized site of the azoxy group [1.401 (2) Å], together with the significant quinoid deformation of the respective phenyl ring, is evidence of conjugation between the aromatic sextet and the π‐electron system of the azoxy group. The geometry of the β isomer is different. The non‐substituted phenyl ring is twisted with respect to the NNO plane by ca 50°, whereas the substituted ring is almost coplanar with the NNO plane. The non‐oxidized N atom in the β isomer has increased sp³ character, which leads to a decrease in the N—N—C bond angle to 116.8 (2)°, in contrast with 120.9 (1)° for the α isomer. The deformation of the C—C—C angles (1–2°) in the phenyl rings at the substitution positions is evidence of the different character of the oxidized and non‐oxidized N atoms of the azoxy group. In the crystal structures, mol­ecules of both isomers are arranged in chains connected by weak N—H?O (α and β) and N—H?N (β) hydrogen bonds.     

Two crystal polymorphs of a flavonoid from Melicope ellyrana

The crystal structure determinations of two crystalline components of the hexane extract of the fruit of the indigenous Australian tree Melicope ellyrana have shown them to be polymorphs of the same compound, namely the flavonoid 4′,5-di­hydroxy-3,3′,8-tri­methoxy-7-(3-methyl­but-2-enyl­oxy)­flavone [systematic name: 5-hydroxy-2-(4-hydroxy-3-methoxy­phenyl)-3,8-di­methoxy-7-(3-methyl­but-2-enyl­oxy)-4H-1-benzo­pyran-4-one], C₂₃H₂₄O₈. The two polymorphs, one monoclinic (polymorph A) and the other triclinic (polymorph B), show significant conformational differences, particularly in the enyl­oxy side chain, while only one (polymorph A) shows intermolecular hydrogen bonding.     

Two (E,E)- and (Z,E)-thiazol-5-ylpenta-2,4-dienones

In order to characterize the structural elements that might play a role in non-covalent DNA binding by the antitumor antibiotic leinamycin, we have solved the crystal structures of the two leinamycin analogs, methyl (R)-5-{2-[1-(tert-butoxy­carbonyl­amino)­ethyl]­thia­zol-4-yl}penta-(E,E)-2,4-dienoate, C₁₆H₂₂N₂O₄S, (II), and 2-methyl-8-oxa-16-thia-3,17-di­aza­bicyclo­[12.2.1]­heptadeca-(Z,E)-1(17),10,12,14-tetraene-4,9-di­one, C₁₄H₁₆N₂O₃S, (III). The penta-2,4-dienone moiety in both of these analogs adopts a conformation close to planarity, with the thia­zole ring twisted out of the plane by 12.9 (2)° in (II) and by 21.4 (4)° in (III).     

Doxy­laminium tetra­chloro­cuprate(II)

The structure of the title compound, 2-[1-(di­methyl­ammon­ioethoxy)-1-phenyl­ethyl]­pyridinium tetra­chloro­cuprate(II), (C₁₇H₂₄N₂O)[CuCl₄], contains di­hydro cations of doxyl­amine hydrogen bonded to two Cl atoms in two different CuCl₄²⁻ anions, with Cl⃛N distances of 3.101 (9) and 3.253 (10) Å. The ethereal O atom is involved in intramolecular hydrogen bonds, with O⃛N distances of 2.517 (11) and 2.757 (12) Å. The molecular dimensions in the cation are as expected and the CuCl₄²⁻ anion has a flattened tetrahedral geometry.