Structures of Cytochrome b_5 Mutated at the Charged Surface-Residues and Their Interactions with Cytochrome c

ＩｎｔｒｏｄｕｃｔｉｏｎＭｉｃｒｏｓｏｍａｌｃｙｔｏｃｈｒｏｍｅｂ5(Ｃｙｔｂ5)ｉｓａｍｅｍｂｅｒｏｆｃｙｔｏｃｈｒｏｍｅｂ5ｆａｍｉｌｙ ,ａｎｄｉｔｓｅｒｖｅｓａｓａｎｅｌｅｃｔｒｏｎｃａｒｒｉｅｒｉｎａｓｅｒｉｅｓｏｆｅｌｅｃｔｒｏｎ ｔｒａｎｓｆｅｒｐｒｏｃｅｓｓｅｓｉｎｂｉｏｌｏｇｉｃａｌｓｙｓ ｔｅｍｓ .1 3 Ｃｙｔｂ5ｉｓａｍｅｍｂｒａｎｅｐｒｏｔｅｉｎｗｉｔｈＭｒ～ 16ｋＤａ ,ｃｏｎｓｉｓｔｉｎｇｏｆｔｗｏｄｏｍａｉｎｓ ,ｏｎｅｈｙｄｒｏｐｈｏｂｉｃｄｏｍａｉｎｗｈｉｃｈａｎｃｈｏｒｓｔｈ…     

Influences of the Hydrophobicity of the Heme-binding Pocket on the Properties and Functions of Cytochrome b_5 Mutants

IntroductionElectrontransferreactionsarethekeystepsinphoto synthesis ,respirationandmanyotherbiochemicalprocess es.1Cytochromeb5isaredoxproteinexistingwidelyinnature ,whichactsasanelectron carrierduringvariouselectrontransferprocessesinthebiologicalsystem .2Cytochromeb5isamembraneproteinwithmolecularweightofapproximately 16kDa ,ofwhichthehydrophobicC terminaldomainanchorscytochromeb5tothemem brane ,andthehydrophilicN terminaldomaincontainshemeprostheticgroupandexhibitsthebiologicalfunctionsof…     

细胞色素b5-蛋白质相互作用研究

蛋白质-蛋白质相互作用在生命过程中发挥至关重要的作用,特别是血红素类蛋白。细胞色素b5(Cyt b5)是血红素蛋白的一个典型代表,在生物体内通过多种蛋白质-蛋白质相互作用来执行其生物功能。目前所揭示的与Cyt b5相关的蛋白质相互作用包括:细胞色素b5-细胞色素b5还原酶,细胞色素b5-细胞色素P450,细胞色素b5-细胞色素c,细胞色素b5-肌红蛋白或血红蛋白,细胞色素b5-融合蛋白(谷胱甘肽S-转移酶GST和绿色荧光蛋白GFP)和细胞色素b5-转运蛋白(蔗糖转运蛋白SUT1和山梨醇转运蛋白SOT6)等。同一蛋白能与众多不同蛋白相互作用的事实,使我们认识到某些特定蛋白的生物学重要性。另一方面,研究同一蛋白与不同蛋白质间的相互作用将会进一步加深我们对蛋白质结构与功能关系的理解,以及指导新颖蛋白的理性设计与最终应用。     

Study on the Gas Phase Stability of Heme-binding Pocket in Cytochrome Tb_5 and Its Mutants by Electrospray Mass Spectrometry

Ｃｙｔｏｃｈｒｏｍｅｂ5(Ｃｙｔｂ5)ｉｓｆｏｕｎｄｂｏｔｈａｓａｃｏｍｐｏ ｎｅｎｔｏｆｔｈｅｍｉｃｒｏｓｏｍａｌｍｅｍｂｒａｎｅｓａｎｄａｓａｓｏｌｕｂｌｅｆｏｒｍｉｎｅｒｙｔｈｒｏｃｙｔｅｓ .Ｉｔｐｌａｙｓａｎｉｍｐｏｒｔａｎｔｒｏｌｅｉｎｂｉｏｌｏｇｉｃａｌｓｙｓｔｅｍｓ ,ｉｎｗｈｉｃｈＣｙｔｂ5ｆｕｎｃｔｉｏｎｓａｓａｎｅｌｅｃｔｒｏｎｃａｒｒｉｅｒ,ｐａｒｔｉｃｉｐａｔｉｎｇｉｎａｓｅｒｉｅｓｏｆｅｌｅｃｔｒｏｎ ｔｒａｎｓｆｅｒｐｒｏｃｅｓｓｅｓ ,ｉｎ ｃｌｕｄｉｎｇｒｅｄｕｃｔｉｏｎｏｆ…     

细胞色素b5Glu44,Glu56的定点突变和蛋白质结构比较

用寡聚核苷酸定点突变的方法将牛肝细胞色素ｂ５基因上第４４位和５６位谷氨酸的密码子ＧＡＡ变成氨酸的密码子ＧＣＴ，获得突变体Ｅ４４Ａ，Ｅ５６Ａ和Ｅ４４／５６Ａ的基因。 它们分别克隆于ＰＵＣ１９上，转化大肠杆菌ＪＭ８３后，突变基因得到成功的表达。     

Influences of the Hydrophobicity of the Heme－binding Pocket on the Properties and Functions of Cytochrome b5 Mutants

The mutation sites of the four mutants F35Y, P40V, V45E and V45Y of cytochrome b5 are located at the edge of the heme-binding pocket. The solvent accessible areas of the “pocket inte-rior“ of the four mutants and the wild-type cytochrome b5 have been calculated based on their crystal structures at high resolu-tion. The change in the hydrophobicity of the heme-binding pocket resulting from the mutation can be quantitatively de-scribed using the difference of the solvent accessible area of the “pocket interior“ of each mutant from that of the wild-type cy-tochrome b5. The influences of the hydrophobicity of the heme-binding pocket on the protein stability and redox potential are discussed.     

An unusual way of formation of spirophosphoranes during the oxidative addition of hexafluoroacctone to σ5P-σ3P-diphosphorus compounds,and in the reaction of 2-chloro-l,2-dimethyl-3-phenyl-2-phenylseleno-l,3,5σ5-diazaphosphetidin-4-one with bis(2-chloroethyl)amine hydrochloride/ triethylamine

The reaction of (chloromethyl)dichlorophosphine 1 with N,N′-dimethyl-N,N′-bis(trimethylsilyl)urea 2 furnished the σ⁵P-σ³P-diphosphorus compound 3 . The reaction of 3 with hexafluoroacetone proceeded in an unusual fashion, with the rupture of the P? P bond, resulting in 4,4-bis(trifluoromethyl)-3-chloro-2-hexfluoroisopropoxy-2-oxo-1,2-oxaphosphetane 7 and the spirophosphorane 4-chloromethyl-1,3,5,7-tetramethyl-1,3,5,7-tetraaza-4σ⁵-phosphaspiro-[3,3]heptan-2,6-dione 8 . The reaction of 2-chloro-1,2-dimethyl-3-phenyl-2-phenylseleno-1,3,2σ⁵-diazaphosphetidin-4-one 9 with bis(2-chloroethyl)amine hydrochloride/triethylamine 10 also proceeded in an unexpected fashion, leading to the spirophosphorane 11 as the only identified product. Single-crystal X-ray structure analyses of compounds 8 and 11 were conducted. The coordination geometry at phosphorus in both compounds shows a large deviation from idealized forms. This distortion arises mainly from the presence of the four-membered rings.     

Synthesis,Crystal Structure,and Thermal Stability of a Dibutyltin Complex {[4-Et2NC6H3（O）C=NC6H3（O）- 5-NO2]（n-Bu2Sn）}2 and Its Interaction with DNA

The Schiff base organotin(IV) complex {[4-Et2NC6H3(O)C=NC6H3(O)-5-NO2](nBu2Sn)}2 has been synthesized via the reaction between 4-(diethylamino) salicylaldehyde-2-amino-4-nitrophenol Schiff base(H2L) and dibutyltin oxide. Complex C1 has been characterized by IR, 1H NMR, 13 C NMR spectra, and elemental analysis, and its crystal structure was determined by X-ray diffraction. It crystallizes in the monoclinic system, space group P21/n with a = 15.6559(8), b = 9.1657(5), c = 18.8351(10) , β = 107.3440(10)°, Z = 4, V = 2579.9(2) 3, Dc = 1.442 Mg·m-3, μ(MoKα) = 1.025 mm-1, F(000) = 1152, R = 0.0250 and wR = 0.0633. The central Sn atom is coordinated in a hexadentate manner to assume a distorted octahedral configuration. Complex C1 was studied by TGA analysis in air atmosphere. The interaction between complex C1 and the herring sperm DNA was realized through the intercalation of the complex based on the studies by EB fluorescent probe.     

Novel oxorhenium complexes with 2-(2′-hydoxy-5′-methylphenyl)benzotriazolato ligand. X-ray studies,spectroscopic characterization and DFT calculations

The [ReOCl₂(hmpbta)(AsPh₃)] · MeCN, [ReOBr₂(hmpbta)(AsPh₃)] · MeCN, [ReOCl₂(hmpbta)(PPh₃)] · MeCN, [ReOBr₂(hmpbta)(PPh₃)] · MeCN, and [ReBr₂(hmpbta)(PPh₃)] · MeCN complexes have been prepared in the reactions of [ReOX₃(EPh₃)₂] (X = Cl, Br; E = P, As) with 2-(2’-hydoxy-5′-methylphenyl)benzotriazole in molar ratio 1:1. All the compounds were structurally and spectroscopically characterized. The electronic structure of [ReOCl₂(hmpbta)(AsPh₃)] has been calculated with the density functional theory (DFT) method. The TDDFT/PCM calculations have been employed to produce a hundred of singlet excited-states starting from the ground-state geometry optimized in the gas phase, and the UV–Vis spectrum of [ReOCl₂(hmpbta)(AsPh₃)] has been discussed on this basis. The paper reports also X-ray structure and DFT calculations for the disubstituted [ReOCl(hmpbta)₂] chelate.     

Lithium ion insertion and extraction reactions with Hollandite-type manganese dioxide free from any stabilizing cations in its tunnel cavity

Lithium ion insertion and extraction reactions with a hollandite-type α-MnO₂ specimen free from any stabilizing cations in its tunnel cavity were investigated, and the crystal structure of a Li⁺-inserted α-MnO₂ specimen was analyzed by Rietveld refinement and whole-pattern fitting based on the maximum-entropy method (MEM). The pH titration curve of the α-MnO₂ specimen displayed a monobasic acid behavior toward Li⁺, and an ion-exchange capacity of 3.25 meq/g was achieved at pH>11. The Li/Mn molar ratio of the Li⁺-inserted α-MnO₂ specimen showed that about two Li⁺ ions can be chemically inserted into one unit cell of the hollandite-type structure. As the amount of Li content was increased, the lattice parameter a increased while c hardly changed. On the other hand, the mean oxidation number of Mn decreased slightly regardless of Li content whenever ions were exchanged. The Li⁺-inserted α-MnO₂ specimen reduced topotactically in one phase when it was used as an active cathode material in a liquid organic electrolyte (1:1 EC:DMC, 1 mol/dm³ LiPF₆) lithium cell. An initial discharge with a capacity of approximately 230 mAh/g was achieved, and the reaction was reversible, whereas the capacity fell steadily upon cycling. About six Li⁺ ions could be electrochemically inserted into one unit cell of the hollandite-type structure. By contrast, the parent α-MnO₂ specimen showed a poor discharge property although no cationic residues or residual H₂O molecules remained in the tunnel space. Rietveld refinement from X-ray powder diffraction data for a Li⁺-inserted specimen of (Li₂O)_0.12MnO₂ showed it to have the hollandite-type structure (tetragonal; space group I4/m; a=9.993(11) and ; Z=8; R_wp=6.12%, R_p=4.51%, R_B=1.41%, and R_F=0.79%; S=1.69). The electron-density distribution images in (Li₂O)_0.12MnO₂ showed that Li₂O molecules almost fill the tunnel space. These findings suggest that the presence of stabilizing atoms or molecules within the tunnel of a hollandite-type structure is necessary to facilitate the diffusion of Li⁺ ions during cycling.