DFT calculations of <Superscript>14</Superscript>N, <Superscript>17</Superscript>O,and <Superscript>2</Superscript>H NQR parameters: Investigation of hydrogen bond interactions in sulfapyridine crystalline structure

DFT calculations of electric field gradient (EFG) tensors at the sites of ¹⁴N, ¹⁷O, and ²H nuclei are carried out to characterize the hydrogen bond (HB) interactions in the sulfapyridine crystal structure. One-molecule (monomer) and hydrogen-bonded hexameric cluster models of sulfapyridine are constructed according to available X-ray coordinates where the proton positions are optimized. Then, EFG tensors are calculated for both monomer and target molecule in the hexameric cluster of sulfapyridine to show the effect of HB interactions on the tensors. The calculated EFG tensors are converted to the experimentally measurable nuclear quadrupole resonance (NQR) parameters: quadrupole coupling constant (C _Q ) and asymmetry parameter (η _Q ). The results reveal different contribution of various nuclei to N-H⋯N and N-H⋯O HB interactions in the cluster where the N2 and O1 have major contributions. The computations are performed with B3LYP and B3PW91 functionals DFT method and 6-311+G* and 6-311++G** standard basis sets using the Gaussian 98 package.     

A theoretical investigation of hydrogen bonding effects on oxygen and hydrogen chemical shielding tensors of aspirin

A computational investigation was carried out to characterize the ¹⁷O and ¹H chemical shielding (CS) tensors in crystalline aspirin. It was found that O–H⋯O and C–H⋯O hydrogen bonds around the aspirin molecule in the crystal lattice have a different influence on the calculated ¹⁷O and ¹H CS eigenvalues and their orientations in the molecular frame of axes. The calculations were performed with the BLYP, B3LYP, and M06 functionals employing 6-311++G(d,p) standard basis set. Calculated CS tensors were used to evaluate the ¹⁷O and ¹H chemical shift isotropy (δ_iso) and anisotropy (Δσ) in crystalline aspirin, which are in reasonable agreement with available experimental data. The difference between the calculated NMR parameters of the monomer and molecular clusters shows how much hydrogen-bonding interactions affect the CS tensors of each nucleus.     

A novel porous supramolecular complex constructed by the co-crystallization of melamine and sulfate via hydrogen bonds and aromatic π-π interaction

Co-crystallization of melamine(MA) and sulfate results in crystalline product [(C₃H₇N₆⁺)₂(SO₄²⁻)] · 2H₂O. The novel supramolecular complex has been characterized by elemental analysis, thermal analysis (TGA and DSC), nuclear magnetic resonance (NMR), and single crystal X-ray diffraction. X-ray crystallographic studies of the complex reveal that the title complex has a 3-D microporous structure which is linked by intense intermolecular hydrogen-bonding interactions (N–H······O, N–H······N, O–H······O) and aromatic π-π interaction, which stabilize the whole crystal framework. The TGA curve shows that the complex is stable up to 500 °C, above which its structure begins to collapse.     

Syntheses,weak interactions, 3D network structures and magnetic properties of two salts based on bis(maleonitriledithiolate)copper(II) anion and substituted triphenylphosphonium cation

Two new salts, [BzTPP]₂[Cu(mnt)₂] (1) and [4NO₂BzTPP]₂[Cu(mnt)₂] (2) (BzTPP⁺ = benzyltriphenylphosphonium and mnt²⁻ = maleonitriledithiolate) have been prepared and characterized by elemental analyses, UV, IR, molar conductivity and single-crystal X-ray diffraction. The single-crystal structure analysis shows that 1 crystallizes in the monoclinic space group P2₁/n, while 2 crystallizes in the triclinic space group P−1. The effects of weak intramolecular interactions such as C–H···O, C–H···S, C–H···N, C–H···Cu hydrogen bonds and p···π, π···π stacking interactions in the solids generate a 3D network structure. It is noted that the change in the molecular topology of the counteraction when the 4-substituted group in the benzyl ring is changed from H to NO₂ results in differences in the crystal system, space group, weak interactions and the stacking mode of the cations and anions of 1 and 2. The magnetic susceptibilities of these salts measured in the temperature range 2.0 to 300 K show weak ferromagnetic coupling features with θ = 2.05 × 10⁻² K for 1 and 5.13 × 10⁻³ K for 2.     

Self-assembled cobalt(II) Schiff base complex: synthesis, structure, and magnetic properties

Abstract  

A mononuclear complex [CoL₂Cl₂]·3.5H₂O (L = 2-[(2,2-diphenylethylimino)methyl]pyridine-1-oxide) has been synthesized and characterized by X-ray structure analysis. The crystal structure confirms the formation of an interesting porous framework with channel diameters of about 8 ? through weak C–H···π and C–H···Cl interactions. The magnetic properties of this complex have also been studied, and the susceptibility and magnetization data were analyzed in terms of the spin Hamiltonian formalism. They confirm substantial zero-field splitting, D/hc = 75 cm⁻¹.     

Studies on mono- and dinuclear bisoxime copper complexes with different coordination geometries

Two new mono- and dinuclear Cu(II) complexes, namely [CuL¹]·0.5H₂O (1) and [(Cu₂(L²)₂)(DMF)]·0.5DMF (2) (H₂L¹ = 1,2-bis{[(Z)-(3-methyl-5-oxo-1-phenyl-1H-pyrazolidin-4(4H)-yl)(phenyl)]methylene-aminooxy}ethane; H₂L² = 1,3-bis{[(Z)-(3-methyl-5-oxo-1-phenyl-1H-pyrazolidin-4(4H)-yl)(phenyl)] methyleneaminooxy}propane), have been synthesized and characterized by X-ray crystallography. The unit cell of complex 1 contains two crystallographically independent but chemically identical [CuL¹] molecules and one crystalline water molecule, showing a slightly distorted square-planar coordination geometry and forming a wave-like pattern running along the a-axis via hydrogen bonding and π···π stacking interactions. Complex 2 has a dinuclear structure, comprising two Cu(II) atoms, two completely deprotonated phenolate bisoxime (L²)²⁻ moieties (in the form of enol), and both coordinated and hemi-crystalline DMF molecules. Complex 2 has square-planar and square-pyramidal geometries around the two copper centers, whose basic coordination planes are almost perpendicular and form an infinite three-dimensional supramolecular network structure involving intermolecular C–H···N, C–H···O, and C–H···π(Ph) hydrogen bonding and π···π stacking interactions of neighboring pyrazole rings.     

Syntheses,molecular structures and magnetic properties of two hybrid organic–inorganic salts of bis(maleonitriledithiolato)copper(II) and substituted benzyl-4-dimethylaminopyridinium cations

Two new hybrid organic–inorganic salts, [BzDMAP]₂[Cu(mnt)₂](1) and [NO₂BzDMAP]₂[Cu(mnt)₂] (2) ([BzDMAP]⁺ = 1-benzyl-4′-dimethylaminopyridinium, [NO₂BzDMAP]⁺ = 1-(4′-nitrobenzyl)-4′-dimethylaminopyridinium, and mnt²⁻ = maleonitriledithiolate) have been characterized structurally and magnetically. The [BzDMAP]⁺ or [NO₂BzDMAP]⁺ cations (C) and the [Cu(mnt)₂]²⁻ anions (A) in 1 and 2 stack into a 1D alternating CC-A-CC-A-CC column. The Cu···N, π···π, C–H···N, C–H···O, and C–H···S weak interactions play important roles in the molecular stacking and generate a 2D or 3D structure of 1 and 2. The magnetic susceptibilities of these salts measured in the temperature range 2.0–300 K show weak antiferromagnetic coupling features with θ = −2.370 K for 1 and −0.222 K for 2.     

Hydrogen bond interactions in sulfamerazine: DFT study of the O-17, N-14, and H-2 electric field gradient tensors

Hydrogen bond (HB) interactions are studied in the real crystalline structure of sulfamerazine by density functional theory (DFT) calculations of the electric field gradient (EFG) tensors at the sites of O-17, N-14, and H-2 nuclei. One-molecule (single) and four-molecule (cluster) models of sulfamerazine are created by available crystal coordinates and the EFG tensors are calculated in both models to indicate the influence of HB interactions on the tensors. Directly relate to the experiments, the calculated EFG tensors are converted to the experimentally measurable nuclear quadrupole resonance (NQR) parameters, quadrupole coupling constant (qcc) and asymmetry parameter (η_Q). The evaluated NQR parameters reveal that due to contribution of the target molecule to N–HN and N–HO types of HB interactions, the EFG tensors at the sites of various nuclei are influenced from single model to the target molecule in cluster. Additionally, O2, N4, and H2 nuclei of the target molecule are significantly influenced by HB interactions, consequently, they have the major contributions to HB interactions in cluster model of sulfamerazine. The calculations are performed employing B3LYP method and 6-311++G** basis set using GAUSSIAN 98 suite of program.     

Synthesis,IR spectrum,thermal property and crystal structure of cyano-bridged heteronuclear polymeric complex, [Cd(teta)Ni(μ-CN)<Subscript>2</Subscript>(CN)<Subscript>2</Subscript>] · 2H<Subscript>2</Subscript>O

The cyano-bridged heteronuclear polymeric complex, [Cd(teta)Ni(μ-CN)₂(CN)₂] · 2H₂O (1), (teta = triethylenetetraamine) was synthesized and characterized by FT-IR spectroscopy, thermal analysis and single crystal X-ray diffraction techniques. It crystallizes in the orthorhombic system, space group Pccn. The asymmetric unit also contains two uncoordinated water molecules. The coordination geometry around the Cd(II) centre is a highly distorted octahedral. In the crystal structure, intramolecular N–H···O and intermolecular N–H···O, O–H···O and O–H···N hydrogen bonds, beside the cyano-bridged chains made up of tetracyanonickelate ions coordinated to Cd(II) ions, where the Ni(II) ion is coordinated by four cyanoligands in a square-planar arrangement, link the molecules into polymeric networks parallel to (001) plane, where the hydrogen bonded water molecules occupy the cavities between the layers. The FT-IR spectrum was reported in the 4,000–400 cm⁻¹ region. Vibration assignments were given for all the observed bands and the spectral feature also supported the structure of the polymeric complex. The decomposition reaction takes place in the temperature range 20–1,000 °C in the static air atmosphere.     

Different orientations of C=O versus P=O in P(O)NHC(O) skeleton: the first study on an aliphatic diazaphosphorinane with a gauche orientation

Different orientations of P(O) versus C(O) in P(O)NHC(O) skeleton have been discussed in two new phosphorus(V)-nitrogen compounds with formula XP(O)Y and XP(O)Z₂ where X = NHC(O)C₆H₄(4-F) and Y = NHCH₂C(CH₃)₂CH₂NH (1), Z = NHC₆H₄(4-CH₃) (2). Compound 1 is the first example of an aliphatic diazaphosphorinane with a gauche orientation which has been studied by X-ray crystallography; the P=O bond is in the equatorial position of the ring. Both compounds show ⁿ J(F,C) and ^m J(F,H) coupling constants (n = 1, 2, 3 and 4; m = 3 and 4) and ³ J(P,C) > ² J(P,C). Quantum chemical calculations were performed with HF and Density Functional Theory (DFT) methods using 6−31+G(d,p) basis set. A tentative assignment of the observed vibrational bands for these molecules is discussed. Compound 1 shows a deshielded C atom of the carbonyl moiety (in ¹³C NMR spectrum) relative to that of 2, which is supported by IR spectroscopy in which the considerably lower C=O frequency is observed for 1. Comparing the X-ray crystallography and IR spectra of 1 and 2 shows that the acyclic compound 2, containing P=O and C=O bonds in an anti position, are involving in a stronger N–H···O=P hydrogen bond in crystal network. This leads to a weaker P=O and N_C(O)NHP(O)–H bonds and stronger N···O interaction. The N_amide–H is involved in an intramolecular N–H···O hydrogen bond.     

Synthesis of new substituted benzaldazine derivatives,hydrogen bonding-induced supramolecular structures and luminescent properties

Syntheses of three benzaldazine compounds 1–3 with the general formula Ar₁(CH = N–N = HC)Ar₂ (Ar₁ = Ar₂ = 2-OH-3,5-^tBu₂C₆H₂ (1), Ar₁ = Ar₂ = 2-BrC₆H₄ (2), Ar₁ = ortho-C₆H₄(NHC₆H₃-Me₂-2,6), Ar₂ = C₆H₄F-2 (3)) are described. All compounds were characterized by elemental analysis, ¹H NMR, ¹³C NMR, IR spectroscopy and single-crystal X-ray crystallography. The different supramolecular structures were obtained through different weak interactions (C ? H···O, O ? H···N and π···π interactions for 1; C ? H···Br and Br···Br interactions for 2; C ? H···F and C ? H···N interactions for 3). Compound 1 shows solvent-dependent fluorescent properties with blue to green emission on the increasing of the solvent polarity. Compounds 2, 3 show blue photoluminescence in different solvents.     

Two manganese(II) complexes based on anthracene-9-carboxylate: Syntheses,crystal structures,and magnetic properties

Abstract  To explore the influence of the anthracene ring skeleton, with a large conjugated π-system, on the structures and properties of its complexes, two Mn^II complexes with anthracene-9-carboxylate ligand were synthesized and structurally characterized: {[Mn(L)₂(H₂O)₂](H₂O)}_∞ (1) and [Mn₂(L)₄(phen)₂(μ-H₂O)](CH₃OH) (2) (L = anthracene-9-carboxylate and phen = 1,10-phenanthroline). Complex (1) has a one-dimensional (1D) chain structure that is further assembled to form a two-dimensional (2D) sheet, and then an overall three-dimensional (3D) network by π···π stacking and/or C–H···π interactions. Complex (2) makes a dinuclear structure by incorporating the chelating phen ligand, which is further interlinked via inter-molecular π···π stacking and C–H···π interactions to generate a higher-dimensional supramolecular network along the different crystallographic directions. The results reveal that the bulky anthracene ring skeleton in L, by virtue of intra- and/or inter-molecular π···π stacking and C–H···π interactions, plays an important role in the formation of complexes (1) and (2). The magnetic properties of (1) and (2) were further investigated. As expected, the very long inter-metallic separations result in weak magnetic coupling, with the corresponding coupling constant values of J = −10 cm⁻¹ for (1) and J = −2.46 cm⁻¹ for (2). Graphical abstract  The constructions of two new Mn^II complexes comprising 1D chain (1) and dinuclear subunit (2) structures have been successfully achieved by using a bulky anthracene-9-carboxylic acid (HL), together with incorporating the chelating 1,10-phenanthroline as a co-ligand for (2). The result reveals that the bulky anthracene ring skeleton of HL, by virtue of intra- and/or inter-molecular π···π stacking and C–H···π interactions, plays an important role in the formation of the supramolecular architectures of (1) and (2). Moreover, magnetic properties of the complexes have been investigated.      

Thiocyanato-copper(II) complexes derived from a tridentate amine ligand and from alanine

Two thiocyanato-Cu(II) complexes including mononuclear dithiocyanato Cu(Me₃dpt)(NCS)₂ (1) and the polymeric 1D [Cu(d,l-Ala)(μ_N,S–NCS)(H₂O)] _n (2) were synthesized and structurally characterized (Me₃dpt = bis(N-methyl-3-propyl)methylamine, Ala = alaninate anion). The IR spectrum of complex 1 confirmed the N-bonding coordination mode of the thiocyanate groups, and its visible spectrum revealed the square pyramidal geometry around the central Cu²⁺ ion. Single X-ray crystallography of 1 showed that the Cu(II) center displays square pyramidal geometry with severe distortion toward trigonal bipyramidal environment. Complex 2 forms a 1-D polymeric chain with the NCS⁻ acting as a μ_N,S-ligand. A distorted SP geometry around the Cu²⁺ centers was achieved by the O and N atoms of alaninato anion, the aqua ligand and by the N and S atoms of the bridging thiocyanate groups. Hydrogen bonds of the type N–H···O, N–H···S and O–H···O are formed in this complex leading to the extension of the 1D chain to a supramolecular network.     

Synthesis, structural characterization and thermal properties of three copper(II) complexes based on aryl hydrazide ligands

The thiosemicarbazide and hydrazide Cu(II) complexes, [Cu₃L₂¹(py)₄Cl₂] (1), [Cu(HL²)py] (2) and [Cu(HL³)py] (3), (H₂L¹ = 1-picolinoylthiosemicarbazide, H₃L² = N′-(2-hydroxybenzylidene)-3-hydroxy-2-naphthohydrazide, H₃L³ = 2-hydroxy-N′-((2-hydroxy-naphthalen-1-yl)methylene)benzohydrazide) have been prepared and characterized through physicochemical and spectroscopic methods as well as X-ray crystallography. Complex 1 has a centrosymmetric structure with –N–N– bridged Cu₃ skeleton. Neighboring molecules are linked into a 3D supermolecular framework by π–π stacking interactions, N–H···Cl and C–H···Cl hydrogen bonds. Complexes 2 and 3 have similar planar structures but different dimers formed by concomitant Cu···N and Cu···O interactions, respectively. Solvent accessible voids with a volume of 391 ?³ are included in the structure of complex 2, indicating that this complex is a potential host candidate. Thermogravimetric analysis shows that the three complexes are stable up to 100 °C.     

Crystallographic and theoretical studies of 4,4′-dimethyl-7,7′-bi([1,2,5]thiadiazolo[3,4-b]pyridylidene)–chloranilic acid (1/1) with intermolecular O–H···N hydrogen bonds and S···O heteroatom interactions

Abstract  The molecular and crystal structure of a 1:1 co-crystal of 4,4′-dimethyl-7,7′-bi([1,2,5]thiadiazolo[3,4-b]pyridylidene)–chloranilic acid, (1), has been determined by X-ray diffraction at the monoclinic space group P2₁/c with cell parameters of a = 8.422(6), b = 7.343(4), c = 16.112(7) ?, β = 104.988(8)°, V = 962.5(10) ?³ and Z = 2. In the crystal structure, two components connect via the intermolecular O–H···N hydrogen bonds [2.804(4) ?] and S···O heteroatom interaction [2.945(3) ?] with R ₂ ²(7) couplings to form a unique and infinite one-dimensional supramolecular tape structure. The calculations of (1) at the HF/6-31G(d), MP2/6-31G(d), and B3LYP/6-31G(d) levels can almost reproduce X-ray geometry. In addition, the distances of the intermolecular O–H···N and S···O interactions by MP2/6-31G(d) and B3LYP/6-31G(d) levels agree well with those in the crystal. The calculated binding energies corrected BSSE and ZPE are −4.487 (HF), −7.473 (MP2), and −5.640 (B3LYP) kcal/mol. The results suggest that the complex (1) is very stable and the dispersion interaction is significantly important for the attractive intermolecular interaction in (1). The NBO analysis has revealed that the n(N) → σ*(O–H) interaction gives the strongest stabilization to the system and the major interaction for the intermolecular S···O contact is n(O) → σ*(S–N). Index Abstract  In the crystal structure of the title compound, the molecules are linked by intermolecular O–H···N hydrogen bonds and short S···O heteroatom interactions with R ₂ ²(7) couplings to construct a unique and infinite one-dimensional supramolecular tape structure.      

Synthesis of some cyclopentenones and crystal structure of 4-hydroxy-3,4-bis(4-methoxyphenyl)-5,5-dimethyl-2-cyclopenten-1-one

Abstract  

Sodium-hydroxide-catalyzed condensation of di-p-methyl- and di-p-methoxybenzil with acetone derivatives was investigated in methanol. Di- and trisubstituted products were obtained as cyclopentenones, while tetraaryl-substituted systems were isolated as cyclopentadienones. The structures of the products were identified by elemental analysis, infrared (IR), nuclear magnetic resonance (¹H NMR), and mass spectroscopy. The solid-state structure of 4-hydroxy-3,4-bis(4-methoxyphenyl)-5,5-dimethyl-2-cyclopenten-1-one was further studied by single-crystal X-ray diffraction analysis. The title compound crystallizes in an orthorhombic space group and intermolecular O–H···O and C–H···O hydrogen bonds stabilize the crystal lattice.     

A two-dimensional ladder-type network in the 2:1 co-crystal of 1,2,5-thiadiazole-3,4-dicarboxylic acid and 4,4′-bipyridine

Abstract  

The crystal structure of the 2:1 co-crystal of 1,2,5-thiadiazole-3,4-dicarboxylic acid and 4,4′-bipyridine, (C₄H₂N₂O₄S)₂·C₁₀H₈N₂, has been determined by X-ray diffraction at the monoclinic space group C2/c with cell parameters of a = 21.388(7) ?, b = 6.735(2) ?, c = 14.877(5) ?, β = 110.431(3)°, and Z = 4. There are one molecule of thiadiazole and a half molecule of bipyridine in the asymmetric unit. The dihedral angle between the pyridine ring planes is 40.5(3)°. Two intramolecular O–H···N [2.730(7) ?] and O–H···O [2.433(6) ?] hydrogen bonds are observed in the thiadiazole molecule. In the crystal structure, the molecules form a unique two-dimensional ladder-type network linked by intermolecular O–H···N [2.704(4) ?] hydrogen bonds and S···O [3.100(5) ?] heteroatom interactions.     

Syntheses, structures and properties of two new neodymium complexes with N-P-acetamidobenzenesulfonyl-glycine acid

Two new neodymium complexes, [Nd₂(abglyH)₆(2,2′-bipy)₂(H₂O)₂] · 4H₂O 1 and {[Nd(abglyH)₃(H₂O)₂] · (4,4′-bipy) · 7H₂O}_n 2 (abglyH₂ = N-P-acetamidobenzenesulfonyl-glycine acid, 2,2′-bipy = 2,2′-bipyridine, 4,4′-bipy = 4,4′-bipyridine), have been synthesized and their structures have been measured by X-ray crystallography. In 1, nine-coordinated Nd(III) ions are bridged by two syn–syn bidentate and two tridentate bridging carboxylate groups from four different abglyH⁻ anions to form dinuclear motifs, which are further connected into a 3-D supramolecular framework via hydrogen bonds between the binuclear motifs and the uncoordinated water molecules. In 2, eight-coordinated Nd(III) ions are linked by six carboxylate groups adopting a syn–syn bidentate bridging fashion to form a 1-D inorganic–organic alternating linear chain. These polymeric chains generate microchannels extending along the a direction, and these cavities are occupied by discrete tetradecameric water clusters, which interact with their surroundings and finally furnish the 3-D supramolecular network via hydrogen bonds. At the same time, π–π stacking interactions between benzene rings from abglyH⁻ anions also play an important role in stabilizing the network.     

A DFT investigation on hydrogen- and halogen-bonding interactions in dichloroacetic acid: application of NMR-GIAO and Bader theories

A quantum chemistry investigation was carried out to examine hydrogen- and halogen-bonds properties in crystalline dichloroacetic acid (DCAA). We reported a systematic density functional theory study of the ¹⁷O, ³⁵Cl, and ¹H nuclear magnetic resonance (NMR) parameters in DCAA. Our results indicated that for those nuclei participated in the hydrogen- and halogen-bonding interactions; NMR parameters exhibit considerable changes on going from the isolated molecule model to the crystalline DCAA. Of course, the magnitude of these changes at each nucleus depends directly on its amount of contribution to the interactions. The topology of the electron density of O–H···O, C–H···O, Cl···Cl, and Cl···O interactions in solid DCAA was characterized using quantum theory of atoms in molecules (QTAIM). Based on QTAIM results, a partial covalent character is attributed to the O–H···O hydrogen bonds in DCAA, whereas all C–H···O, Cl···O, and Cl···Cl intermolecular contacts are weak and basically electrostatic in nature. Moreover, an approximate linear relationship seems to exist for each of the proton chemical shifts and anisotropies as a function of ρ_BCP.     

Synthesis, structure and spectroscopic characterization of a new organic cation diphosphate: [2,6-(C2H5)2C6H3NH3]2H2P2O7?·?2H2O

The chemical preparation, crystal structure and spectroscopic characterization of [2,6-(C₂H₅)₂C₆H₃NH₃]₂H₂P₂O₇ · 2H₂O have been reported. The compound crystallizes in the monoclinic system in space group P2₁/c and cell parameters a = 14.323(2), b = 11.158(3), c = 16.387(2) ? and β = 96.34(3)°; V = 2602.8(9) ?³ and Z = 4. Crystal structure has been determined and refined to R = 0.044, using 3528 independent reflections. The atomic arrangement of the title compound shows anionic layer of formulae [H₂P₂O₇(H₂O)₂] _n ²ⁿ⁻ stacked along the c-axis. The 2,6-diethylanilinium cations establish on both sides of these inorganic layer hydrogen bonds so as to contribute to the intralayer cohesion in the network. The different building species are held together by means of O–H···O and N–H···O intermolecular hydrogen bonds in addition to electrostatic and van der Waals interactions.