Exploring surfaces and cavities in lipoxygenase and other proteins by hyperpolarized xenon-129 NMR

This paper presents an exploratory study of the binding interactions of xenon with the surface of several different proteins in the solution and solid states using both conventional and hyperpolarized (129)Xe NMR. The generation of hyperpolarized (129)Xe by spin exchange optical pumping affords an enhancement by 3-4 orders of magnitude of its NMR signal. As a result, it is possible to observe Xe directly bound to the surface of micromolar quantities of lyophilized protein. The highly sensitive nature of the (129)Xe line shape and chemical shift are used as indicators for the conditions most likely to yield maximal dipolar contact between (129)Xe nuclei and nuclear spins situated on the protein. This is an intermediate step toward achieving the ultimate goal of NMR enhancement of the binding-site nuclei by polarization transfer from hyperpolarized (129)Xe. The hyperpolarized (129)Xe spectra resulting from exposure of four different proteins in the lyophilized, powdered form have been examined for evidence of binding. Each of the proteins, namely, metmyoglobin, methemoglobin, hen egg white lysozyme, and soybean lipoxygenase, yielded a distinctly different NMR line shape. With the exception of lysozyme, the proteins all possess a paramagnetic iron center which can be expected to rapidly relax the (129)Xe and produce a net shift in its resonance position if the noble gas atom occupies specific binding sites near the iron. At temperatures from 223 to 183 K, NMR signals were observed in the 0-40 ppm chemical shift range, relative to Xe in the gas phase. The signals broadened and shifted downfield as the temperature was reduced, indicating that Xe is exchanging between the gas phase and internal or external binding sites of the proteins. Additionally, conventional (129)Xe NMR studies of metmyoglobin and lipoxygenase in the solution state are presented. The temperature dependence of the chemical shift and line shape indicate exchange of Xe between adsorption sites on lipoxygenase and Xe in the solvent on the slow to intermediate exchange time scale. The NMR results are compared with N(2), Xe, and CH(4) gas adsorption isotherms. It is found that lipoxygenase is unique among the proteins studied in possessing a relatively high affinity for gas molecules, and in addition, demonstrating the most clearly resolved adsorbed (129)Xe NMR peak in the lyophilized state.     

Solid-state 129Xe and 131Xe NMR study of the perxenate anion XeO(6)4-

Results of the first solid-state 131Xe NMR study of xenon-containing compounds are presented. The two NMR-active isotopes of xenon, 129Xe (I=1/2) and 131Xe (I=3/2), are exploited to characterize the xenon magnetic shielding and quadrupolar interactions for two sodium perxenate salts, Na4XeO6.xH2O (x=0, 2), at an applied magnetic field strength of 11.75 T. Solid-state 129/131Xe NMR line shapes indicate that the local xenon environment in anhydrous Na4XeO6 adopts octahedral symmetry, but upon hydration, the XeO6(4-) anion becomes noticeably distorted from octahedral symmetry. For stationary, anhydrous samples of Na4XeO6, the heteronuclear 129/131Xe-23Na dipolar interaction is the principal contributor to the breadth of the 129/131Xe NMR lines. For stationary and slow magic-angle-spinning samples of Na4XeO(6).2H2O, the anisotropic xenon shielding interaction dominates the 129Xe NMR line shape, whereas the 131Xe NMR line shape is completely dominated by the nuclear quadrupolar interaction. The xenon shielding tensor is approximately axially symmetric, with a skew of -0.7+/-0.3, an isotropic xenon chemical shift of -725.6+/-1.0 ppm, and a span of 95+/-5 ppm. The 131Xe quadrupolar coupling constant, 10.8+/-0.5 MHz, is large for a nucleus at a site of approximate Oh symmetry, and the quadrupolar asymmetry parameter indicates a lack of axial symmetry. This study demonstrates the extreme sensitivity of the 131Xe nuclear quadrupolar interaction to changes in the local xenon environment.     

129Xe NMR Studies of Pecan Shell-Based Biochar and Structure-Process Correlations

Pecan shell-based biochar is utilized as a filtration medium, sequestrant for metallic ions, soil conditioner, and other applications. One process for creating the biochar involves the use of phosphoric acid at high temperature in a partial oxygen atmosphere to produce a highly porous carbonaceous material. In this work, we found ¹²⁹Xe NMR to be an excellent technique to study micropores in biochar. Thus, the ¹²⁹Xe chemical shift in biochar was found to vary linearly with the xenon pressure; from the data an estimate of about 8–9 Å could be proposed for the average pore diameter in pecan shell-based biochar. Through saturation recovery and 2-D NMR exchange experiments, information on the exchange between free versus bound xenon was obtained. Furthermore, correlations of ¹²⁹Xe NMR data with the carbonization process conditions were made.     

Analysis of the temperature and pressure dependence of the 129Xe NMR chemical shift and signal intensity for the derivation of basic parameters of adsorption as applied to zeolite ZSM-5.

Temperature and pressure dependences of the 129Xe NMR chemical shift and the signal intensity have been investigated using ZSM-5 as an adsorbent under routine conditions without using any high-pressure or especially high-temperature facilities. The use of a rigorously shielded system and a calibration sample for the signal intensity was found to be valuable to obtain reliable data about the chemical shift and the signal intensity. The 129Xe NMR data obtained between 0.05 and 1.5 atm and from 24 to 80 degrees C were analyzed based on the Dubinin-Radushkevich equation as well as the Langmuir type equation. In both analyses, chemical shift data succeeded only partially in providing the profile of adsorption, such as energetic aspects, surface area, saturated amount of Xe adsorption and specific parameters of 129Xe chemical shift. It was shown that the reliable total analysis was achieved when the chemical shift data were used together with the intensity data. Such an analysis of the chemical shift data, aided by the intensity data, will be useful in performing nano-material analysis on 129Xe NMR without invoking the traditional methodology of gravimetric or volumetric adsorption experiments.     

129Xe NMR as a probe of polymer blends

The miscibility of two-component polymer blends has been investigated using xenon-129 (¹²⁹Xe) nuclear magnetic resonance (NMR) to probe the phase morphology. The chemical shift of ¹²⁹Xe dissolved in a given polymer is unique, thus heterogeneous blends with large domain sizes exhibit two ¹²⁹Xe NMR lines. When a single resonance is obtained, the data are consistent with miscibility, yielding an upper bound on the domain size. The temperature dependence of the relative solubilities and chemical shifts of ¹²⁹Xe dissolved in the pure components may allow a determination of the phase morphology in blends exhibiting a single resonance. The method is used to demonstrate that polychloroprene and 25% epoxidized 1,4-polyisoprene form a miscible blend.     

Hyperpolarized 129Xe NMR investigation of multifunctional organic/inorganic hybrid mesoporous silica materials

An extensive study has been made on a series of multifunctional mesoporous silica materials, prepared by introducing two different organoalkoxysilanes, namely 3-[2-(2-aminoethylamino)ethylamino]propyltrimethoxysilane (AEPTMS) and 3-cyanopropyltriethoxysilane (CPTES) during the base-catalyzed condensation of tetraethoxysilane (TEOS), using the variable-temperature (VT) hyperpolarized (HP) 129Xe NMR technique. VT HP-129Xe NMR chemical shift measurements of adsorbed xenon revealed that surface properties as well as functionality of these AEP/CP-functionalized microparticles (MP) could be controlled by varying the AEPTMS/CPTES ratio in the starting solution during synthesis. Additional chemical shift contribution due to Xe-moiety interactions was observed for monofunctional AEP-MP and CP-MP as well as for bifunctional AEP/CP-MP samples. In particular, unlike CP-MP that has a shorter organic backbone on the silica surface, the amino groups in the AEP chain tends to interact with the silanol groups on the silica surface causing backbone bending and hence formation of secondary pores in AEP-MP, as indicated by additional shoulder peak at lower field in the room-temperature 129Xe NMR spectrum. The exchange processes of xenon in different adsorption regions were also verified by 2D EXSY HP-129Xe NMR spectroscopy. It is also found that subsequent removal of functional moieties by calcination treatment tends to result in a more severe surface roughness on the pore walls in bifunctional samples compared to monofunctional ones. The effect of hydrophobicity/hydrophilicity of the organoalkoxysilanes on the formation, pore structure and surface property of these functionalized mesoporous silica materials are also discussed.     

129Xe NMR study of ZSM-5 type zeolites Effect of cationic sites

A comprehensive ¹²⁹Xe NMR spectroscopy study on H-ZSM-5 zeolites having different aluminum contents and on cation-exchanged ZSM-5 zeolites is reported. The parent H-ZSM-5 zeolites were ion-exchanged with Group I–III metal ions ( K, Ca, Sr, Ba, Al, La) to varying degrees. The chemical shift of adsorbed ¹²⁹Xe is seen to be a function of the pentasil structure of ZSM-5, of the number of free Brønsted acid sites and of the number of metal cations in the framework. Differences in the chemical shift of ¹²⁹Xe are seen between cations due to their different polarizing forces against xenon. The amount of cations has also an effect on the δ_xe-xe term in Fraissard's equation that may be caused by changes in the diffusional characteristics of Xe atoms in the ZSM-5 framework.     

Probing the alkyl ligands on silylated mesoporous MCM-41 using hyperpolarized 129Xe NMR spectroscopy

Variable-temperature hyperpolarized (HP) 129Xe NMR spectroscopy has been employed to characterize surface properties of mesoporous MCM-41 modified by silylation treatment. The characteristic chemical shifts responsible for Xe-surface interactions exhibit strong correlations with both the surface coverage and chain length of the grafted alkylsilanes. Consequently, the deshielding medium contribution due to individual alkyl ligand can be deduced based on the group contribution analysis revealing the potential use of HP 129Xe NMR for probing the surface properties of organic-functionalized porous materials.     

A Genetically Encoded β‐Lactamase Reporter for Ultrasensitive 129Xe NMR in Mammalian Cells

Molecular imaging holds considerable promise for elucidating biological processes in normal physiology as well as disease states, but requires noninvasive methods for identifying analytes at sub‐micromolar concentrations. Particularly useful are genetically encoded, single‐protein reporters that harness the power of molecular biology to visualize specific molecular processes, but such reporters have been conspicuously lacking for in vivo magnetic resonance imaging (MRI). Herein, we report TEM‐1 β‐lactamase (bla) as a single‐protein reporter for hyperpolarized (HP) ¹²⁹Xe NMR, with significant saturation contrast at 0.1 μm . Xenon chemical exchange saturation transfer (CEST) interactions with the primary allosteric site in bla give rise to a unique saturation peak at 255 ppm, well removed (≈60 ppm downfield) from the ¹²⁹Xe‐H₂O peak. Useful saturation contrast was also observed for bla expressed in bacterial cells and mammalian cells.     

Probing polymer colloids by Xe NMR

Model aqueous dispersions of polystyrene, poly(methyl methacrylate), poly(n-butyl acrylate) and a statistical copolymer poly(n-butyl acrylate-co-methyl methacrylate) were studied using xenon NMR spectroscopy. The ¹²⁹Xe NMR spectra of these various latexes reveal qualitative and quantitative differences in the number of peaks and in their line widths and chemical shifts. Above the glass transition temperature, exchange between xenon sorbed in the particle core and free xenon outside the particles is fast on the ¹²⁹Xe spectral time-scale and a single ¹²⁹Xe signal is observed. At temperatures below the glass transition temperature, the exchange between sorbed and free xenon is slow on the ¹²⁹Xe spectral time-scale and two ¹²⁹Xe NMR signals can be observed. If the signal of sorbed ¹²⁹Xe is observed, its chemical shift, line width and integral relative to the integral of free ¹²⁹Xe can be used for the characterization of the particle core. The line width of free ¹²⁹Xe provides the residence time of xenon outside the particles and can be used to determine the rate constant characterizing the kinetics of penetration of xenon in the particles. This rate constant emerges as promising parameter for the characterization of the polymer particle surface.     

129Xe and 131Xe nuclear magnetic dipole moments from gas phase NMR spectra

³He, ¹²⁹Xe and ¹³¹Xe NMR measurements of resonance frequencies in the magnetic field B₀ = 11.7586 T in different gas phase mixtures have been reported. Precise radiofrequency values were extrapolated to the zero gas pressure limit. These results combined with new quantum chemical values of helium and xenon nuclear magnetic shielding constants were used to determine new accurate nuclear magnetic moments of ¹²⁹Xe and ¹³¹Xe in terms of that of the ³He nucleus. They are as follows: μ(¹²⁹Xe) = ?0.7779607(158)μ_N and μ(¹³¹Xe) = +0.6918451(70)μ_N. By this means, the new ‘helium method’ for estimations of nuclear dipole moments was successfully tested. Gas phase NMR spectra demonstrate the weak intermolecular interactions observed on the ³He and ¹²⁹Xe and ¹³¹Xe shielding in the gaseous mixtures with Xe, CO₂ and SF₆. Copyright © 2015 John Wiley & Sons, Ltd.     

Rotaxane Probes for the Detection of Hydrogen Peroxide by 129Xe HyperCEST NMR Spectroscopy

The development of sensitive and chemically selective MRI contrast agents is imperative for the early detection and diagnosis of many diseases. Conventional responsive contrast agents used in ¹H MRI are impaired by the high abundance of protons in the body. ¹²⁹Xe hyperCEST NMR/MRI comprises a highly sensitive complement to traditional ¹H MRI because of its ability to report specific chemical environments. To date, the scope of responsive ¹²⁹Xe NMR contrast agents lacks breadth in the specific detection of small molecules, which are often important markers of disease. Herein, we report the synthesis and characterization of a rotaxane‐based ¹²⁹Xe hyperCEST NMR contrast agent that can be turned on in response to H₂O₂, which is upregulated in several disease states. Added H₂O₂ was detected by ¹²⁹Xe hyperCEST NMR spectroscopy in the low micromolar range, as well as H₂O₂ produced by HEK 293T cells activated with tumor necrosis factor.     

Simulations of 129Xe NMR chemical shift of atomic xenon dissolved in liquid benzene

The isotropic ¹²⁹Xe NMR chemical shift of atomic Xe dissolved in liquid benzene was simulated by combining classical molecular dynamics and quantum chemical calculations of ¹²⁹Xe nuclear magnetic shielding. Snapshots from the molecular dynamics trajectory of xenon atom in a periodic box of benzene molecules were used for the quantum chemical calculations of isotropic ¹²⁹Xe chemical shift using nonrelativistic density functional theory as well as relativistic Breit?CPauli perturbation corrections. Thus, the correlation and relativistic effects as well as the temperature and dynamics effects could be included in the calculations. Theoretical results are in a very good agreement with the experimental data. The most of the experimentally observed isotropic ¹²⁹Xe shift was recovered in the nonrelativistic dynamical region, while the relativistic effects explain of about 8% of the total ¹²⁹Xe chemical shift.     

A simple method for improving protein solubility and long-term stability

Increasing a protein concentration in solution to the required level, without causing aggregation and precipitation is often a challenging but important task, especially in the field of structural biology; as little as 20% of nonmembrane proteins have been found to be suitable candidates for structural studies predominantly due to poor protein solubility. We demonstrate here that simultaneous addition of charged amino acids L-Arg and L-Glu at 50 mM to the buffer can dramatically increase the maximum achievable concentration of soluble protein (up to 8.7 times). These amino acids are effective in preventing protein aggregation and precipitation, and they dramatically increase the long-term stability of the sample; additionally, they protect protein samples from proteolytic degradation. Specific protein-protein and protein-RNA interactions are not adversely affected by the presence of these amino acids. These additives are particularly suitable for situations where high protein concentration and long-term stability are required, including solution-state studies of isotopically labeled proteins by NMR.     

129Xe NMR spectroscopy study of porous cyanometallates

Zinc and cadmium hexacyanocobaltates(III) were prepared, and their porous networks were explored using 129Xe spectroscopy. The crystal structures of these two compounds are representative of porous hexacyanometallates, cubic (Fm-3m) for cadmium and rhombohedral (R-3c) for zinc. In the cubic structure, the porosity is related to systematic vacancies created from the elemental building block (i.e., the hexacyanometallate anion), whereas the rhombohedral (R-3c) structure is free of vacant sites but has tetrahedral coordination for the zinc atom, which leads to relatively large ellipsoidal pores communicated by elliptical windows. According to the Xe adsorption isotherms, these porous frameworks were found to be accessible to the Xe atom. The structure of the higher electric field gradient at the pore surface (Fm-3m) appears and is accompanied by a stronger guest-host interaction for the Xe atoms and a higher capacity for Xe sorption. For cadmium, the 129Xe NMR signal is typical of isotropic movement for the Xe atom, indicating that it remains trapped within a spherical cavity. From spectra recorded for different amounts of adsorbed Xe, the cavity diameter was estimated. For the zinc complex, 129Xe NMR spectra are asymmetric because of the Xe atom movement within an elongated cavity. The line-shape asymmetry changes when the Xe loading within the porous framework increases, which was ascribed to Xe-Xe interactions through the cavity windows. The Xe adsorption revealed additional structural information for the studied materials.     

MCM-41分子筛的合成及129Xe核磁共振的研究

ＭＣＭ４１中孔分子筛是１９９２年由Ｍｏｂｉｌ公司的科学家Ｋｒｅｓｇｅ［１］等人首次合成的,并在《自然》杂志发表。这种中孔分子筛具有六角形孔径,孔径２ｎｍ～１０ｎｍ,这种分子筛的孔径可以通过水晶模板来控制［２］。已报道的合成ＭＣＭ４１,孔径一般在２．０ｎｍ～３．５ｎｍ,使用的水晶模板一般是单一或两种阳离子季铵盐表面活性剂［３,４］。本论文通过引入第二种扩孔模板,与阳离子季铵盐协同作用,合成了孔径５．２ｎｍ（ＢＥＴ法测）的ＭＣＭ４１。通过氮气的吸脱附,测定了分子筛的比表面和孔径等性质。Ｊ．Ｆｒａｉｓｓａｒｄ…     

ChemInform Abstract: NMR of 129Xe Trapped in Clathrates and Some Other Solids.

129Xe NMR chemical shifts, obtained for Xe trapped in the cages of clathrate hydrates and a clathrasil sample, together with shift data for solid Xe correlate linearly with the mean free radius of the cage.     

129Xe NMR chemical shift in Xe@C60 calculated at experimental conditions: Essential role of the relativity,dynamics, and explicit solvent

The isotropic ¹²⁹Xe nuclear magnetic resonance (NMR) chemical shift (CS) in Xe@C₆₀ dissolved in liquid benzene was calculated by piecewise approximation to faithfully simulate the experimental conditions and to evaluate the role of different physical factors influencing the ¹²⁹Xe NMR CS. The ¹²⁹Xe shielding constant was obtained by averaging the ¹²⁹Xe nuclear magnetic shieldings calculated for snapshots obtained from the molecular dynamics trajectory of the Xe@C₆₀ system embedded in a periodic box of benzene molecules. Relativistic corrections were added at the Breit–Pauli perturbation theory (BPPT) level, included the solvent, and were dynamically averaged. It is demonstrated that the contribution of internal dynamics of the Xe@C₆₀ system represents about 8% of the total nonrelativistic NMR CS, whereas the effects of dynamical solvent add another 8%. The dynamically averaged relativistic effects contribute by 9% to the total calculated ¹²⁹Xe NMR CS. The final theoretical value of 172.7 ppm corresponds well to the experimental ¹²⁹Xe CS of 179.2 ppm and lies within the estimated errors of the model. The presented computational protocol serves as a prototype for calculations of ¹²⁹Xe NMR parameters in different Xe atom guest–host systems. © 2013 Wiley Periodicals, Inc.     

Use of selective Trp side chain labeling to characterize protein-protein and protein-ligand interactions by NMR spectroscopy

Recent studies on amino acid occurrence in protein binding sites suggest that only a reduced number of residues are responsible for most interaction energy in protein-protein and protein-ligand interactions. Above all, tryptophan (Trp) seems to be the most frequent residue in protein's hot spots. Here we report a novel, efficient, and cost-effective method to selectively incorporate specific isotope labels into the side chains of Trp residues in recombinant proteins. We show that the method proposed allows selective NMR observation of Trp side chains that enables studies of ligand binding, protein-protein interactions, hydrogen binding, protein folding, and side chain dynamics. Examples with the protein BIR3 will be given.     

Introducing krypton NMR spectroscopy as a probe of void space in solids

A wealth of information about porous materials and their void spaces has been obtained from the chemical shift data in (129)Xe NMR spectroscopy during the past decades. In this contribution, the only NMR active, stable krypton isotope (83)Kr (spin I = (9)/(2)) is explored as a novel probe for porous materials. It is demonstrated that (83)Kr NMR spectroscopy of nanoporous or microporous materials is feasible and straightforward despite the low gyromagnetic ratio and low abundance of the (83)Kr isotope. The (83)Kr line width in most of the studied cases is quadrupolar dominated and field-strength independent. A significant exception was found in calcium-exchanged zeolites where the field dependence of the line width indicates a distribution of isotropic chemical shifts that may be caused by long-range disorder in the zeolite structure. The (83)Kr chemical shifts observed in the investigated materials display a somewhat different behavior than that of their (129)Xe counterparts and should provide a great resource for the verification or refinement of current (129)Xe chemical shift theory. In contrast to xenon, krypton with its smaller atomic radius has been demonstrated to easily penetrate the porous framework of NaA. Chemical shifts and line widths of (83)Kr are moderately dependent on small fluctuations in the krypton loading but differ strongly between some of the studied samples.