Layer-by-layer construction of protein architectures through avidin–biotin and lectin–sugar interactions for biosensor applications

In this review, the preparation and properties of protein architectures constructed by layer-by-layer (LbL) deposition through avidin–biotin and concanavalin A (Con A)–sugar interactions are discussed in relation to their use for optical and electrochemical biosensors. LbL films can be constructed through the alternate deposition of avidin and biotin-labeled enzymes on the surfaces of optical probes and electrodes. The enzymes retain their catalytic activity, resulting in the formation of optical and electrochemical biosensors. Alternatively, Con A can be used to construct enzyme-containing LbL films and microcapsules using sugar-labeled enzymes. Some enzymes such as glucose oxidase and horseradish peroxidase can be used for this purpose without labeling with sugar, because these enzymes contain intrinsic hydrocarbon chains on their molecular surfaces. The Con A/enzyme LbL architectures were successfully used to develop biosensors sensitive to specific substrates of the enzyme. In addition, Con A-based films can be used for the optical and electrochemical detection of sugars.     

Tissue- and microbe-based electrochemical detectors for liquid chromatography

A novel electrochemical detection approach for liquid chromatography is described, utilizing rapid-responding tissue- and microbe-based carbon paste electrodes. This approach adds a new dimension of selectivity to liquid chromatography/electrochemistry, based on bioactivity (substrate specificity). Complex chromatograms (e.g., of urine samples) are greatly simplified as only substrates of the enzymes present in the cellular material are detected. Selectivity can be greatly improved by obtaining two chromatograms, one profiling only the biologically active solutes. Because of their higher enzymatic activity and stability, cellular materials are more suitable for liquid chromatographic detection than isolated enzymes. This concept is tested on several classes of analytes, using banana-, mushroom- and yeast-modified electrodes. Results are also given for a series configuration with a tissue-generator/electrode collector. These developments should lead to increased use of natural materials for monitoring chromatographic effluents.     

Hierarchical Hybrid Peroxidase Catalysts for Remediation of Phenol Wastewater

We report a new family of hierarchical hybrid catalysts comprised of horseradish peroxidase (HRP)–magnetic nanoparticles for advanced oxidation processes and demonstrate their utility in the removal of phenol from water. The immobilized HRP catalyzes the oxidation of phenols in the presence of H₂O₂, producing free radicals. The phenoxy radicals react with each other in a non‐enzymatic process to form polymers, which can be removed by precipitation with salts or condensation. The hybrid peroxidase catalysts exhibit three times higher activity than free HRP and are able to remove three times more phenol from water compared to free HRP under similar conditions. In addition, the hybrid catalysts reduce substrate inhibition and limit inactivation from reaction products, which are common problems with free or conventionally immobilized enzymes. Reusability is improved when the HRP–magnetic nanoparticle hybrids are supported on micron‐scale magnetic particles, and can be retained with a specially designed magnetically driven reactor. The performance of the hybrid catalysts makes them attractive for several industrial and environmental applications and their development might pave the way for practical applications by eliminating most of the limitations that have prevented the use of free or conventionally immobilized enzymes.     

PHB (poly‐β‐hydroxybutyrate) and its enzymatic degradation

Our daily life needs depend on plastics, as they are cheap and durable, so they become the most commonly used synthetic chemical products. But from an environmentalist's point of view, a major concern related to these plastics is their non‐biodegradable nature. Driven by growing demand to search for sustainable solutions to dispose off generating huge volume of synthetic plastic wastes, shifted the mind of researcher towards the use of biodegradable plastics which can be completely disposed‐off by microbial enzymatic degradation. These biodegradable plastics or “bioplastics” are also synthesized by microbes under certain stressed environmental conditions out of which poly(R‐3‐hydroxybutyrate) (PHB) is the most ubiquitous and best known representatives of polyhydroxyalkanoate family. The PHB is most intensively used for the innovative biomedical applications owing to suitable combination of biocompatibility, transport characteristics, and mechanical properties. These challenging aspects of PHB can be used for designing of novel medical devices, in tissue engineering, and for systematic sustained drug delivery. Lots of research reports on PHB degrading enzymes and their producing microorganisms including biochemical aspects are available but in scattered form. So this review highlighted all the relevant information of PHB and PHB‐degrading enzymes starting with basic classification, synthesis, mechanism, and applications that are environment friendly and are of public interest.     

Optical sensing based on analyte recognition by enzymes,carriers and molecular interactions

Despite the tremendous variety of methods suitable for sensing applications, we face the fact that chemical sensors displaying sensitivity, selectivity and reversibility are still scarce and are mostly confined to low-molecular-weight species. Obviously, it is not the lack of optical (or other) transduction methods that limit the performance of present day sensor desingns, but rather the insufficient selectivity of the recognition process, particularly in the field of sensors for organic and bioorganic species. The use of enzymes, ion carriers and natural or synthetic receptor/carriers which can under go specific interactions with the species to be recognized (such as through hydrogen bonding or charge-transfer interaction) can result in specific recognition and, consequently, sensing. Examples for optical sensing schemes for clinically or biologically important species including enzyme substrates, metabolites, drugs, alkali and ammonium ions and other will be given. In enzyme-based sensors various options exist: depending on which species is immobilized, assays for substrates (such as glucose, ethanol, lactate or creatine), enzymes (such as esterases) or inhibitors (such as organophosphates) can be designed. In addition, the intrinsic optical properties of certain enzymes, coenzymes or metabolites can be utilized for sensing purposes, a fact that presents an interesting alternative to enzyme sensors with chemical transducers.Notwithstanding the selectivity of biocatalytic sensors, their stability and sensitivity is moderate. Bioorganic synthetic molecules which can recognize and reversibly bind other species offer an attractive alternative, particularly in terms of stability. However, quite a different situation is found in such cases because receptors, in contrast to enzymes, do not “digest” their substrates. Hence, while the steady-state response in enzyme-based sensors is a result of kinetic equilibration, substrate binding in non-metabolizing receptors results in thermodynamic equilibration. However, most existing receptors (except antibodies) lack the unique specificity of enzymes. On the other side, new bioorganic molecules and stable receptor/carriers along with polymer materials of proper permeation selectivity can help to overcome current limitations of protein-based systems. Neutral ion carriers, which may be considered as ion receptors, are a useful example of sometimes highly specific recognition/carrier molecules with excellent stability. Unfortunately, no receptor /carrier molecules of similar specificity do exist yet for most other organic and clinical parameters of interest. There is an obvious need for new and stable molecules suitable for specific recognition of low-molecular weight organic species.We will report on the use of such new receptor/carrier molecules, the respective sensor materials, and how the process of recognition can be coupled to optical transduction. Such receptors/carriers also allow other kinds of discriminations: if, for instance, it is enantio-selective (i.e. preferably binds one species out of a pair of optical isomers), a fairly specific recognition of enantiomers of biogenic amines (such as some drugs and biogenic amines) will become possible. Specific examples will also be given of new types of sensors based on recognition by charge-transfer interaction, through-space interaction and hydrogen bonding, with fair specificity for thiamine, penicilline, nitrate, salicylate and cholic acids. Finally, current problems and the significant challenges for sensors research in the 1990s will be discussed.     

Tuning molecular recognition in water-soluble nanogels with enzyme-like activity for the kemp elimination

The synthesis and characterization of water-soluble imprinted nanogels with enzyme-like activity in the Kemp elimination is reported together with studies that demonstrate how the recognition properties, morphology, and catalytic activity of the nanoparticles can be tuned by the use of surfactants, such as Tween 20. A detailed kinetic investigation is carried out, which shows clear evidence of saturation kinetics and rule out the effects of mass transfer. This is supported by characterization of the polymeric materials that confirms the morphological changes resulting from the use of surfactants. These results provide an important tool for the development of nanoparticle-based, new catalyst-mimicking enzymes.     

Configurational control in stereochemically pure ligands and metal complexes for asymmetric catalysis

Enantioselective synthesis relies on suitable chiral mediators, which, in many cases, owe their stereochemical information to chiral ligands coordinated to metals. Like nature, which uses (diastereomerically pure) enzymes with several stereogenic centers to catalyze biological processes, chemists, for their purposes, tend more and more to turn their attention towards ligands and metal complexes with more than one stereogenic center or element of chirality. Selected issues of the resulting diastereomeric interactions as well as the advantages that result from the use of such complexes in catalysis are presented and discussed here.     

Electrodes supported on ion-exchange membranes as sensors in gases and low-conductivity solvents

An electroanalytical sensor is proposed that is suitable for the detection of electroactive analytes present in gases or low-conductivity solvents where supporting electrolytes cannot be introduced. It consists of a porous working electrode supported on one surface of a cationic ion-exchange membrane (Nafion 417), the other surface of which is in contact with an electrolyte solution containing the counter and reference electrodes. Such an ion-exchange membrane replaces a conventional supporting electrolyte dissolved in the analyte sample and can be regarded as a solid polymer electrolyte (SPE) confined in the close neighbourhood of the working electrode. Alternative procedures followed for coating SPE membranes with various materials (Pt, Au, C or Hg) are described, together with the general properties displayed by the resulting composite electrodes in analyte-free gaseous or liquid media. These assemblies have been used as both voltammetric and amperometric sensors for electroactive analytes present in gases and in aqueous or organic solvents with no supporting electrolyte. The results indicate that their performance is similar to that expected on conventional electrodes, the only difference being a slightly lower degree of reversibility for the electrode processes investigated. Detection limits for some analytes were calculated and the use of SPE electrodes as sensors suitable for the continuous monitoring of electroactive analytes dispersed in gases or non-conductive liquids is reported. Preliminary attempts to use these assemblies for the determination of trace metals in low-conductivity solvents by anodic stripping voltammetry are discussed.     

Biocatalysis and Biomass Conversion in Alternative Reaction Media

In this Minireview, the state of the art in the use of ionic liquids (ILs) and deep eutectic solvents (DESs) as alternative reaction media for biocatalytic processes and biomass conversion is presented. Initial, proof‐of‐concept studies, more than a decade ago, involved first‐generation ILs based on dialkylimidazolium cations and non‐coordinating anions, such as tetrafluoroborate and hexafluorophosphate. More recently, emphasis has switched to more environmentally acceptable second‐generation ILs comprising cations, which are designed to be compatible with enzymes and, in many cases are derived from readily available, renewable resources, such as cholinium salts. Protic ionic liquids (PILs), prepared simply by mixing inexpensive amines and acids, are particularly attractive from both an environmental and economic viewpoint. DESs, prepared by mixing inexpensive salts with, preferably renewable, hydrogen‐bond donors such as glycerol and amino acids, have also proved suitable reaction media for biocatalytic conversions. A broad range of enzymes can be used in ILs, PILs and DESs, for example lipases in biodiesel production. These neoteric solvents are of particular interest, however, as reaction media for biocatalytic conversions of substrates that have limited solubility in common organic solvents, such as carbohydrates, nucleosides, steroids and polysaccharides. This has culminated in the recent focus of attention on their use as (co)solvents in the pretreatment and saccharification of lignocellulose as the initial steps in the conversion of second‐generation renewable biomass into biofuels and chemicals. They can similarly be used as reaction media in subsequent conversions of hexoses and pentoses into platform chemicals.     

Silver cluster-biomolecule hybrids: from basics towards sensors

We focus on the functional role of small silver clusters in model hybrid systems involving peptides in the context of a new generation of nanostructured materials for biosensing. The optical properties of hybrids in the gas phase and at support will be addressed with the aim to bridge fundamental and application aspects. We show that extension and enhancement of absorption of peptides can be achieved by small silver clusters due to the interaction of intense intracluster excitations with the π-π* excitations of chromophoric aminoacids. Moreover, we demonstrate that the binding of a peptide to a supported silver cluster can be detected by the optical fingerprint. This illustrates that supported silver clusters can serve as building blocks for biosensing materials. Moreover, the clusters can be used simultaneously to immobilize biomolecules and to increase the sensitivity of detection, thus replacing the standard use of organic dyes and providing label-free detection. Complementary to that, we show that protected silver clusters containing a cluster core and a shell liganded by thiolates exhibit absorption properties with intense transitions in the visible regime which are also suitable for biosensing applications.     

Enzyme-assisted extraction of arsenic species from plant material

Investigations regarding the transfer and metabolism of arsenic species in plants require mild extraction conditions to conserve the original composition of arsenic species. Beside the use of water or water/methanol for extraction of arsenic species from plant samples, enzymes can assist this procedure by digestion of cellulose and other constituents of cell walls, resulting in a faster, more efficient extraction technique which preserves the arsenic species. The investigations presented here were focused on the stability of certain arsenic species in enzymatic solutions, optimal conditions for their chromatographic separation and detection namely by means of ion chromatography–inductively coupled plasma mass spectrometry and improvements with respect to extraction efficiency. With commercially available enzymes and enzyme mixtures, the digestion rate of soluble starch as model cellulose was determined using high-performance anion exchange chromatography–pulsed amperometric detection analysis of glucose as the major digestion product. The most effective digestion rate (80% within 4?h) was obtained with Viscozyme®. This enzyme mixture was applied to extracted arsenic species from algae and terrestrial plant materials. Qualitative and quantitative differences in the results between enzyme-assisted and water extractions were obtained and discussed. The results show that the application of enzymes in mild extraction protocols should be evaluated as an additional step for the identification of As-metabolics in organisms. Careful selection of suitable enzyme mixtures can overcome the disadvantage that extraction efficiency is very organism-specific.     

Evaluation of enzymatic activity on nanoscale polystyrene-block-polymethylmethacrylate diblock copolymer domains

Understanding structural and functional changes of polymeric surface-bound proteins is extremely important as polymers play an increasingly significant role as arrays and substrates in proteomics applications. We carried out, for the first time, quantitative activity measurements of horseradish peroxidase (HRP) enzymes immobilized selectively on the polystyrene domains of microphase-separated polystyrene-block-polymethylmethacrylate ultrathin films. The specific enzymatic activity of HRP adsorbed on the diblock copolymer surface was evaluated and compared to that of HRP in free solution. We demonstrate that the polymeric surface-bound HRP molecules maintain approximately 85% of their activity in free solution. The unique advantages of diblock copolymer templates, involving nanoscale self-assembly and largely retained protein functionality, make the spontaneously constructed enzyme nanoarrays highly suitable as proteomics substrates. Our novel assembly method of providing functional enzymes on diblock copolymer thin films can be greatly beneficial for high-throughput and high-density protein assays.     

3D-Printed Phenacrylate Decarboxylase Flow Reactors for the Chemoenzymatic Synthesis of 4-Hydroxystilbene

Continuous flow systems for chemical synthesis are becoming a major focus in organic chemistry and there is a growing interest in the integration of biocatalysts due to their high regio- and stereoselectivity. Methods established for 3D bioprinting enable the fast and simple production of agarose-based modules for biocatalytic reactors if thermally stable enzymes are available. We report here on the characterization of four different cofactor-free phenacrylate decarboxylase enzymes suitable for the production of 4-vinylphenol and test their applicability for the encapsulation and direct 3D printing of disk-shaped agarose-based modules that can be used for compartmentalized flow microreactors. Using the most active and stable phenacrylate decarboxylase from Enterobacter spec. in a setup with four parallel reactors and a subsequent palladium(II) acetate-catalysed Heck reaction, 4-hydroxystilbene was synthesized from p-coumaric acid with a total yield of 14.7 % on a milligram scale. We believe that, due to the convenient direct immobilization of any thermostable enzyme and straightforward tuning of the reaction sequence by stacking of modules with different catalytic activities, this simple process will facilitate the establishment and use of cascade reactions and will therefore be of great advantage for many research approaches.     

Synthesis and characterization of processable polyborate precursors

Polyborates have been formed by disproportionation and polycondensation of trimethoxyboroxine and also of trimethoxyboroxine and boric acid. The crtiical role of stoichiometry in the formation of polyborates without requiring incorporation of a metal counter ion is revealed. The emphasis is on integration of this chemistry with fabrication processes. Incorporation of an appropriate linear organic polymer is shown to yield the required rheological and thermal characteristics in this regard. These polyborates are inferred to be suitable as precursors for boron nitride in geometrical forms that can be processed as supported structures. However, they are also determined to be unsuitable as precursors for boron nitride fibers, oriented or isotropic, primarily due to their low glass transition temperature.     

Macromolecular Coating Enables Tunable Selectivity in a Porous PDMS Matrix

Whether for laboratory use or clinical practice, many fields in Life Sciences require selective filtering. However, most existing filter systems lack the ability to easily tune their filtration behavior. Two key elements for efficient filtering are a high surface‐to‐volume ratio and the presence of suitable chemical groups which establish selectivity. In this study, an artificial PDMS‐based capillary system with highly tunable selectivity properties is presented. The high surface‐to‐volume ratio of this filter system is generated by first embedding sugar fibers into a synthetic polymer matrix and then dissolving these fibers from the cured polymer. To functionalize this filter, the inner surface of the capillaries is coated with purified or synthetic macromolecules. Depending on the type of macromolecule used for filter functionalization, selective sieving is observed based on steric hindrance, electrostatic binding, electrostatic repulsion, or specific binding interactions. Furthermore, it is demonstrated that enzymes can be immobilized in the capillary system which allows for performing multiple cycles of enzymatic reactions with the same batch of enzymes and without the need to separate the enzymes from their reaction products. In addition to lab‐scale filtration and enzyme immobilization applications demonstrated here, the functionalized porous PDMS matrix may also be used to test binding interactions between different molecules.     

Detection of unwanted protein-bound ligands by capillary zone electrophoresis: the case of hidden ligands that stabilize cholinesterase conformation

Detection, identification and characterization of compounds present in purified proteins and biopharmaceuticals are of central interest. As well as chemical remedies, proteins of pharmacological interest have to exhibit their nakedness to become therapeutic drugs. Cholinesterases (ChE) are enzymes of major importance for detoxification of poisonous esters. Likewise, ChE are characterized by the high catalytic efficiency of an active site positioned at the bottom of a deep gorge. The gorge can be partially or fully occupied by ligands, i.e., substrates and inhibitors that are currently used in affinity chromatography purification steps. Accordingly, a suitable method allowing to analyse the presence of unwanted ligands and its influence on the functional conformation and stability of these enzymes was essential. We have developed CZE approaches for that purpose. The factors causing discrepancies between data for thermal unfolding of ChE by electrophoretic and by calorimetric methods were investigated. The presence of unwanted hidden ligands bound to purified enzymes was first demonstrated. The incidence of these ligands was discussed. Altogether, our results raised several questions concerning the real conformation of the native state of enzymes. Finally, CZE was proved to be a pertinent tool to validate the conformity of purified enzymes to a status of biopharmaceutical.     

Engineering thermal and mechanical properties of flexible fiber-reinforced aerogel composites

Flexible aerogel was successfully supported onto 4-layer-aligned glass fibers through impregnation, followed by drying at atmospheric pressure. The prepared nanocomposites can achieve a low thermal conductivity of 0.026?W/(m·K), which holds great promising for their use in thermal insulation applications. By choosing different designs of the four fiber layers, in the terms of LLLL, LTLL, LLTT, LTLT, LTTL and LTTT, the laminated structures of aerogel composites can be accordingly controlled. Further microstructure characterization of the composites revealed the homogeneous dispersion of nanoporous structure through the aerogel matrix, as well as highly-aligned fibers to reinforce the structure. Detailed investigation on the thermal and mechanical properties of the prepared fiber-aerogel composites showed that their performances were highly related to the laminated design of fiber layers. The introduction of fibers as the backbone of the aerogel and the suitable design of their laminated structure can greatly improve the mechanical properties of the aerogel composites while maintaining a low thermal conductivity.     

以交联聚乙烯醇为载体的阴离子交换剂的合成与性能研究

大孔乙酸乙烯酯－异氰尿酸三烯丙酯共聚物树脂经醇解生成亲水性的交联聚乙烯醇，然后相继与环氧氯丙烷和二乙胺反应，合成出含二乙基氨基羟丙基的阴离子交换剂，研究了交联聚乙烯醇环氧基化的最佳条件，发现以二甲基亚砜作溶剂能够显著地提高活化程度，反应时间以３ｈ为最佳，并研究了该阴离子交换剂的交换量、亲水性、热稳定性、溶胀稳定性，发现它具备常压分离蛋白质所需的基本性能，是较为理想的生化用的离子交换剂。     

Enzymatic functionalization of carbon-hydrogen bonds

The development of new catalytic methods to functionalize carbon-hydrogen (C-H) bonds continues to progress at a rapid pace due to the significant economic and environmental benefits of these transformations over traditional synthetic methods. In nature, enzymes catalyze regio- and stereoselective C-H bond functionalization using transformations ranging from hydroxylation to hydroalkylation under ambient reaction conditions. The efficiency of these enzymes relative to analogous chemical processes has led to their increased use as biocatalysts in preparative and industrial applications. Furthermore, unlike small molecule catalysts, enzymes can be systematically optimized via directed evolution for a particular application and can be expressed in vivo to augment the biosynthetic capability of living organisms. While a variety of technical challenges must still be overcome for practical application of many enzymes for C-H bond functionalization, continued research on natural enzymes and on novel artificial metalloenzymes will lead to improved synthetic processes for efficient synthesis of complex molecules. In this critical review, we discuss the most prevalent mechanistic strategies used by enzymes to functionalize non-acidic C-H bonds, the application and evolution of these enzymes for chemical synthesis, and a number of potential biosynthetic capabilities uniquely enabled by these powerful catalysts (110 references).     

Cytochrome-c detection

Following a myocardial infarction (MI) cells die or are damaged and their contents leak into the blood circulation, resulting in elevated serum levels of various enzymes, proteins, and organic molecules. Over the past few decades, it has become standard practice to employ the detection of these elevated substances as markers for the confirmation of MIs and to monitor MI patients’ response to treatment. Although it has previously been shown that cytochrome-c, a small respiratory protein, is among those elevated, the lack of a suitable detection system has prevented its routine use in the diagnosis of MIs. We present a preliminary study in which chemiluminescence was employed to detect elevated levels of cytochrome-c in the serum of MI patients. The technique, which is specific for c-type proteins, is approx 30 times more sensitive than the traditional Coomassie blue stain and can detect as little as 0.03 μg of protein. It also has potential for diagnostic use in other diseases that are characterized by mitochondrial damage.