Probing ground-state single-electron self-exchange across a molecule-metal interface

We have probed single-molecule redox reaction dynamics of hemin (chloride) adsorbed on Ag nanoparticle surfaces by single-molecule surface-enhanced Raman spectroscopy (SMSERS) combined with spectroelectrochemistry. Redox reaction at the molecule/Ag interface is identified and probed by the prominent fluctuations of the Raman frequency of a specific vibrational mode, ν(4), which is a typical marker of the redox state of the iron center in a hemin molecule. On the basis of the autocorrelation and cross-correlation analysis of the single-molecule Raman spectral trajectories and the control measurements of single-molecule spectroelectochemistry and electrochemical STM, we suggest that the single-molecule redox reaction dynamics at the hemin-Ag interface is primarily driven by thermal fluctuations. The spontaneous fluctuation dynamics of the single-molecule redox reaction is measured under no external electric potential across the molecule-metal interfaces, which provides a novel and unique approach to characterize the interfacial electron transfer at the molecule-metal interfaces. Our demonstrated approaches are powerful for obtaining molecular coupling and dynamics involved in interfacial electron transfer processes. The new information obtained is critical for a further understanding, design, and manipulation of the charge transfer processes at the molecule-metal interface or metal-molecule-metal junctions, which are fundamental elements in single-molecule electronics, catalysis, and solar energy conversion.     

Inelastic tunneling spectroscopy of gold-thiol and gold-thiolate interfaces in molecular junctions: The role of hydrogen

It is widely believed that when a molecule with thiol (S-H) end groups bridges a pair of gold electrodes, the S atoms bond to the gold and the thiol H atoms detach from the molecule. However, little is known regarding the details of this process, its time scale, and whether molecules with and without thiol hydrogen atoms can coexist in molecular junctions. Here, we explore theoretically how inelastic tunneling spectroscopy (IETS) can shed light on these issues. We present calculations of the geometries, low bias conductances, and IETS of propanedithiol and propanedithiolate molecular junctions with gold electrodes. We show that IETS can distinguish between junctions with molecules having no, one, or two thiol hydrogen atoms. We find that in most cases, the single-molecule junctions in the IETS experiment of Hihath et al. [Nano Lett. 8, 1673 (2008)] had no thiol H atoms, but that a molecule with a single thiol H atom may have bridged their junction occasionally. We also consider the evolution of the IETS spectrum as a gold STM tip approaches the intact S-H group at the end of a molecule bound at its other end to a second electrode. We predict the frequency of a vibrational mode of the thiol H atom to increase by a factor ～2 as the gap between the tip and molecule narrows. Therefore, IETS should be able to track the approach of the tip towards the thiol group of the molecule and detect the detachment of the thiol H atom from the molecule when it occurs.     

Vibrational relaxation pathways of amide I and amide II modes in N-methylacetamide

We studied the vibrational energy relaxation mechanisms of the amide I and amide II modes of N-methylacetamide (NMA) monomers dissolved in bromoform using polarization-resolved femtosecond two-color vibrational spectroscopy. The results show that the excited amide I vibration transfers its excitation energy to the amide II vibration with a time constant of 8.3 ± 1 ps. In addition to this energy exchange process, we observe that the excited amide I and amide II vibrations both relax to a final thermal state. For the amide I mode this latter process dominates the vibrational relaxation of this mode. We find that the vibrational relaxation of the amide I mode depends on frequency which can be well explained from the presence of two subbands with different vibrational lifetimes (~1.1 ps on the low frequency side and ~2.7 ps on the high frequency side) in the amide I absorption spectrum.     

Electromagnetically induced transparency with quantum interferometry

We have shown that electromagnetically induced transparency can be achieved by control-probe interferometry using two delayed phase-locked ultrashort pulses. Two vibrational wavepackets on the excited state, excited by two delayed phase-locked ultrashort pulses, interfere constructively or destructively leading to enhancement or suppression of absorption to a selective set of vibrational levels. Depending on the phase difference and the delay between the pulses with same carrier frequency, one can design different transparency windows between absorption peaks at consecutive even(odd) vibrational levels by eliminating absorption at odd(even) vibrational levels. We have shown that by switching the phase difference of two delayed femtosecond pulses, one can switch to complete elimination of absorption from enhanced absorption to a particular set of vibrational levels in the excited state. Thus, switching of transparency through window between odd vibrational levels to that between even vibrational levels is possible. By properly choosing the temporal width and the carrier frequency of the pulses, lossless transmission of complete or bands of frequencies of the pulses can be achieved through these transparency windows. Hence, designing of single- or multi-mode transparency windows in NaH molecule is feasible by control-probe quantum interferometry.     

Vibrational energy relaxation of large-amplitude vibrations in liquids

Given the limited intermolecular spaces available in dense liquids, the large amplitudes of highly excited, low frequency vibrational modes pose an interesting dilemma for large molecules in solution. We carry out molecular dynamics calculations of the lowest frequency ("warping") mode of perylene dissolved in liquid argon, and demonstrate that vibrational excitation of this mode should cause identifiable changes in local solvation shell structure. But while the same kinds of solvent structural rearrangements can cause the non-equilibrium relaxation dynamics of highly excited diatomic rotors in liquids to differ substantially from equilibrium dynamics, our simulations also indicate that the non-equilibrium vibrational energy relaxation of large-amplitude vibrational overtones in liquids should show no such deviations from linear response. This observation seems to be a generic feature of large-moment-arm vibrational degrees of freedom and is therefore probably not specific to our choice of model system: The lowest frequency (largest amplitude) cases probably dissipate energy too quickly and the higher frequency (more slowly relaxing) cases most likely have solvent displacements too small to generate significant nonlinearities in simple nonpolar solvents. Vibrational kinetic energy relaxation, in particular, seems to be especially and surprisingly linear.     

Time-resolved spectroscopy of silver nanocubes: observation and assignment of coherently excited vibrational modes

The response of single crystal, cubic silver particles to ultrafast laser-induced heating has been examined experimentally and theoretically. The transient absorption traces display clear modulations due to coherently excited vibrational modes. Nanocube samples with edge lengths smaller than 50 nm show a single modulation, whereas samples larger than 50 nm show two vibrational modes. The results are compared to finite element calculations, where the cubes are modeled as having cubic crystal symmetry with the principal axes parallel to the sides of the particle. The action of the laser pulse is treated in two ways, first, as creating a uniform initial strain. In this case the predominant mode excited is the breathing mode. The period of this mode is in reasonable agreement with the vibrational periods measured for the smaller cubes and with the higher frequency modulation observed for the larger cubes. A nonuniform initial strain is also considered, which could arise from nonuniform heating for particles larger than the optical skin depth of the metal. In this case the predominant mode excited is a nontotally symmetric mode. The calculated periods from this analysis are in reasonable agreement with the lower frequency modulations observed for the larger samples. The results from this study show that, to within the accuracy of these measurements, the elastic constants of cubic silver nanoparticles are the same as bulk silver.     

Numerically exact, time-dependent treatment of vibrationally coupled electron transport in single-molecule junctions

The multilayer multiconfiguration time-dependent Hartree (ML-MCTDH) theory within second quantization representation of the Fock space, a novel numerically exact methodology to treat many-body quantum dynamics for systems containing identical particles, is applied to study the effect of vibrational motion on electron transport in a generic model for single-molecule junctions. The results demonstrate the importance of electronic-vibrational coupling for the transport characteristics. For situations where the energy of the bridge state is located close to the Fermi energy, the simulations show the time-dependent formation of a polaron state that results in a pronounced suppression of the current corresponding to the phenomenon of phonon blockade. We show that this phenomenon cannot be explained solely by the polaron shift of the energy but requires methods that incorporate the dynamical effect of the vibrations on the transport. The accurate results obtained with the ML-MCTDH in this parameter regime are compared to results of nonequilibrium Green's function theory.     

Mode-selective O-H stretching relaxation in a hydrogen bond studied by ultrafast vibrational spectroscopy

The ultrafast relaxation of the excited O-H stretching vibration is studied by ultrafast infrared-pump/infrared-probe and infrared-pump/Raman-probe spectroscopy. We demonstrate a 200 fs lifetime of the hydrogen-bonded O-H stretching mode in 2-(2'-hydroxy-5'-methyl-phenyl)benzotriazole (TINUVIN P). O-H stretching relaxation occurs through a few major channels that all involve combination and overtone bands of modes with considerable in-plane O-H bending character. In particular, the mode, which contains the largest O-H bending contribution, plays a prominent role for primary processes of intramolecular vibrational energy redistribution. Theoretical calculations of vibrational energy transfer rates based on a Fermi golden rule approach account for the experimental findings.     

Coherence transfer processes in vibrational relaxation of polyatomic molecules in condensed media

The vibrational relaxation of a polyatomic molecule in a condensed host is studied by a consideration of two molecular vibrations. Relaxation processes, intermode coupling terms and vibrational frequency fluctuation contributions are retained. Population decay (T₁), dephasing (T₂), and coherence transfer rates are evaluated through second order in the limit where the host bath dynamics are rapid compared to these molecular timescales. The rates are expressed in terms of temperature and frequency dependent bath correlation functions. For the special case of a three level system (the ground state and ones where one of the two vibrational modes is excited) the important effects of anharmonicity are incorporated. It is shown that certain coherence transfer terms involve zero frequency bath correlation functions, so they should be larger than the high frequency ones which obey modified energy gap laws. A discussion is presented of the types of interactions which may contribute to these coherence transfer processes.     

Population dynamics in vibrational modes during non-Born-Oppenheimer processes: CARS spectroscopy used as a mode-selective filter

The coupling of specific nuclear and electronic degrees of freedom of a molecular system during non-radiative electronic transitions plays a central role in photochemistry and photobiology. This breakdown of the Born-Oppenheimer approximation during processes such as internal conversion determines the mechanism and product distribution of photochemical reactions and is responsible for the high efficiency of photobiological processes. In order to explore this phenomena in beta-carotene, a molecule that plays a primary role as an auxiliary light-harvesting pigment in photosynthesis, a spectroscopic method was employed that allows for the individual vibrational modes to be monitored selectively within the dynamics of an internal conversion process. This spectroscopic technique employs an initial pump laser to excite the molecule into an excited electronic state and resolves the subsequent relaxation process by interrogating the system with a time-delayed, coherent anti-Stokes Raman process (CARS), which acts as a mode-selective filter for observing the population flow within specific vibrational modes with a time resolution in the femtosecond regime.     

Application of electrochemistry to single-molecule junctions: from construction to modulation

State-of-the-art molecular electronics focus on the measurement of electrical properties of materials at the single-molecule level.Experimentally, molecular electronics face two primary challenges. One challenge is the reliable construction of single-molecule junctions, and the second challenge is the arbitrary modulation of electron transport through these junctions. Over the past decades, electrochemistry has been widely adopted to meet these challenges, leading to a wealth of novel findings. This review starts from the application of electrochemical methods to the fabrication of nanogaps, which is an essential platform for the construction of single-molecule junctions. The utilization of electrochemistry for the modification of molecular junctions,including terminal groups and structural backbones, is introduced, and finally, recent progress in the electrochemical modulation of single-molecule electron transport is reviewed.     

Switching Quantum Interference in Single-Molecule Junctions by Mechanical Tuning

The charge transport through single-molecule electronic devices can be controlled mechanically by changing the molecular geometrical configuration in situ, but the tunable conductance range is typically less than two orders of magnitude. Herein, we proposed a new mechanical tuning strategy to control the charge transport through the single-molecule junctions via switching quantum interference patterns. By designing molecules with multiple anchoring groups, we switched the electron transport between the constructive quantum interference (CQI) pathway and the destructive quantum interference (DQI) pathway, and more than four orders of magnitude conductance variation can be achieved by shifting the electrodes in a range of about 0.6 nm, which is the highest conductance range ever achieved using mechanical tuning.     

化学反应的内禀反应坐标法（X）：氨基卡宾脱氢反应的从头计算研究

氨基卡宾作为重要的反应中间体引起了人们的兴趣,它可分别通过1,1-H_2消除和1,2-H_2消除2种脱氢方式分别生成氰和异氰,但对这两个反应过程的细致研究至今未见报道,本文利用内禀反应坐标(IRC)法对氨基卡宾的2种脱氢反应途径进行微观动力学解析,并对反应途径上的振动相关问题做了理论探讨。     

Charge transport through single-molecule bilayer-graphene junctions with atomic thickness

The van der Waals interactions (vdW) between π-conjugated molecules offer new opportunities for fabricating heterojunction-based devices and investigating charge transport in heterojunctions with atomic thickness. In this work, we fabricate sandwiched single-molecule bilayer-graphene junctions via vdW interactions and characterize their electrical transport properties by employing the cross-plane break junction (XPBJ) technique. The experimental results show that the cross-plane charge transport through single-molecule junctions is determined by the size and layer number of molecular graphene in these junctions. Density functional theory (DFT) calculations reveal that the charge transport through molecular graphene in these molecular junctions is sensitive to the angles between the graphene flake and peripheral mesityl groups, and those rotated groups can be used to tune the electrical conductance. This study provides new insight into cross-plane charge transport in atomically thin junctions and highlights the role of through-space interactions in vdW heterojunctions at the molecular scale.

Charge transport through single-molecule bilayer-graphene junctions fabricated by a cross-plane break junction technique can be tuned at the atomic level.     

Quantum Interference Enhanced Chemical Responsivity in Single-Molecule Dithienoborepin Junctions

Providing a chemical control over charge transport through molecular junctions is vital to developing sensing applications at the single-molecule scale. Quantum-interference effects that affect the charge transport through molecules offer a unique chance to enhance the chemical control. Here, we investigate how interference effects can be harnessed to optimize the response of single molecule dithienoborepin (DTB) junctions to the specific coordination of a fluoride ion in solution. The single-molecule conductance of two DTB isomers is measured using scanning tunneling microscopy break-junction (STM-BJ) before and after fluoride ion exposure. We find a significant change of conductance before and after the capture of a fluoride ion, the magnitude of which depends on the position of the boron atom in the molecular structure. This single-molecule sensor exhibits switching ratios of up to four orders of magnitudes, suggesting that the boron–fluoride coordination can lead to quantum-interference effects. This is confirmed by a quantum chemical characterization, pointing toward a cross-conjugated path through the molecular structure as the origin of the effect.     

Structure-Independent Conductance of Thiophene-Based Single-Stacking Junctions

The experimental investigation of intermolecular charge transport in π-conjugated materials is challenging. Herein, we describe the investigation of charge transport through intermolecular and intramolecular paths in single-molecule and single-stacking thiophene junctions by the mechanically controllable break junction (MCBJ) technique. We found that the ability for intermolecular charge transport through different single-stacking junctions was approximately independent of the molecular structure, which contrasts with the strong length dependence of conductance in single-molecule junctions with the same building blocks, and the dominant charge-transport path of molecules with two anchors transited from an intramolecular to an intermolecular path when the degree of conjugation increased. An increase in conjugation further led to higher binding probability owing to the variation in binding energies, as supported by DFT calculations.     

Theoretical calculation of positron annihilation spectrum using positron-electron correlation-polarization potential

The positron-electron correlation-polarization potential model is used to calculate annihilation spectra of carbon disulfide and benzene. We assume that the positron is captured in the vibrationally excited states of the target molecule through vibrational Feshbach resonances. Using the standard normal mode representation, we calculated the resonance energies and widths for each vibrational mode. The resonance widths were calculated with Fermi's Golden Rule approximation, where the time-dependent wave packet approach has been applied. We found that vibrational resonances of infrared-active modes play a dominant role in resonant annihilation; however, infrared-inactive modes also contribute to the annihilation spectrum through polarizability changes along normal mode coordinates.     

Study of molecular junctions with a combined surface-enhanced Raman and mechanically controllable break junction method

We have developed a combined surface-enhanced Raman spectroscopy (SERS) and break junction method to detect and characterize molecules between two microfabricated electrodes separated with a gap that can be continuously adjusted from a few angstroms to nanometers. It allows us to obtain a vibrational fingerprint of the adjustable molecular junction while performing electron transport measurements on the molecule simultaneously. This new approach will provide not only new insights into electron transport properties of molecule junctions on a chip but also the mechanism of single-molecule-SERS.