Four NiII complexes with the new cyclam–methylimidazole ligand 1‐[(1‐methyl‐1H‐imidazol‐2‐yl)methyl]‐1,4,8,11‐tetraazacyclotetradecane

Although it has not proved possible to crystallize the newly prepared cyclam–methylimidazole ligand 1‐[(1‐methyl‐1H‐imidazol‐2‐yl)methyl]‐1,4,8,11‐tetraazacyclotetradecane (L^Im1), the trans and cis isomers of an Ni^II complex, namely trans‐aqua{1‐[(1‐methyl‐1H‐imidazol‐2‐yl)methyl]‐1,4,8,11‐tetraazacyclotetradecane}nickel(II) bis(perchlorate) monohydrate, [Ni(C₁₅H₃₀N₆)(H₂O)](ClO₄)₂·H₂O, (1), and cis‐aqua{1‐[(1‐methyl‐1H‐imidazol‐2‐yl)methyl]‐1,4,8,11‐tetraazacyclotetradecane}nickel(II) bis(perchlorate), [Ni(C₁₅H₃₀N₆)(H₂O)](ClO₄)₂, (2), have been prepared and structurally characterized. At different stages of the crystallization and thermal treatment from which (1) and (2) were obtained, a further two compounds were isolated in crystalline form and their structures also analysed, namely trans‐{1‐[(1‐methyl‐1H‐imidazol‐2‐yl)methyl]‐1,4,8,11‐tetraazacyclotetradecane}(perchlorato)nickel(II) perchlorate, [Ni(ClO₄)(C₁₅H₃₀N₆)]ClO₄, (3), and cis‐{1,8‐bis[(1‐methyl‐1H‐imidazol‐2‐yl)methyl]‐1,4,8,11‐tetraazacyclotetradecane}nickel(II) bis(perchlorate) 0.24‐hydrate, [Ni(C₂₀H₃₆N₆)](ClO₄)₂·0.24H₂O, (4); the 1,8‐bis[(1‐methyl‐1H‐imidazol‐2‐yl)methyl]‐1,4,8,11‐tetraazacyclotetradecane ligand is a minor side product, probably formed in trace amounts in the synthesis of L^Im1. The configurations of the cyclam macrocycles in the complexes have been analysed and the structures are compared with analogues from the literature.     

Reaction of 2‐[(2‐aminoethyl)amino]ethanol with pyridine‐2‐carbaldehyde and complexation of the products with CuII and CdII along with docking studies

The reaction between 2‐[2‐(aminoethyl)amino]ethanol and pyridine‐2‐carbaldehyde in a 1:2 molar ratio affords a mixture containing 2‐({2‐[(pyridin‐2‐ylmethylidene)amino]ethyl}amino)ethanol (PMAE) and 2‐[2‐(pyridin‐2‐yl)oxazolidin‐3‐yl]‐N‐(pyridin‐2‐ylmethylidene)ethanamine (POPME). Treatment of this mixture with copper(II) chloride or cadmium(II) chloride gave trichlorido[(2‐hydroxyethyl)({2‐[(pyridin‐2‐ylmethylidene)amino]ethyl})azanium]copper(II) monohydrate, [Cu(C₁₀H₁₆N₃O)Cl₃]·H₂O or [Cu(HPMAE)Cl₃]·H₂O, 1 , and dichlorido{2‐[2‐(pyridin‐2‐yl)oxazolidin‐3‐yl]‐N‐(pyridin‐2‐ylmethylidene)ethanamine}cadmium(II), [CdCl₂(C₁₆H₁₈N₄O)] or [CdCl₂(POPME)], 2 , which were characterized by elemental analysis, FT–IR, Raman and ¹H NMR spectroscopy and single‐crystal X‐ray diffraction. PMAE is potentially a tetradentate N₃O‐donor ligand but coordinates to copper here as an N₂ donor. In the structure of 1 , the geometry around the Cu atom is distorted square pyramidal. In 2 , the Cd atom has a distorted octahedral geometry. In addition to the hydrogen bonds, there are π–π stacking interactions between the pyridine rings in the crystal packing of 1 and 2 . The ability of PMAE, POPME and 1 to interact with ten selected biomolecules (BRAF kinase, CatB, DNA gyrase, HDAC7, rHA, RNR, TrxR, TS, Top II and B‐DNA) was investigated by docking studies and compared with doxorubicin.     

Three AgI,CuI and CdII coordination polymers based on the new asymmetrical ligand 2‐{4‐[(1H‐imidazol‐1‐yl)methyl]phenyl}‐5‐(pyridin‐4‐yl)‐1,3,4‐oxadiazole: syntheses,characterization and emission properties

The new asymmetrical organic ligand 2‐{4‐[(1H‐imidazol‐1‐yl)methyl]phenyl}‐5‐(pyridin‐4‐yl)‐1,3,4‐oxadiazole ( L , C₁₇H₁₃N₅O), containing pyridine and imidazole terminal groups, as well as potential oxdiazole coordination sites, was designed and synthesized. The coordination chemistry of L with soft Ag^I, Cu^I and Cd^II metal ions was investigated and three new coordination polymers (CPs), namely, catena‐poly[[silver(I)‐μ‐2‐{4‐[(1H‐imidazol‐1‐yl)methyl]phenyl}‐5‐(pyridin‐4‐yl)‐1,3,4‐oxadiazole] hexafluoridophosphate], {[Ag( L )]PF₆}_n, catena‐poly[[copper(I)‐di‐μ‐iodido‐copper(I)‐bis(μ‐2‐{4‐[(1H‐imidazol‐1‐yl)methyl]phenyl}‐5‐(pyridin‐4‐yl)‐1,3,4‐oxadiazole)] 1,4‐dioxane monosolvate], {[Cu₂I₂( L )₂]·C₄H₈O₂}_n, and catena‐poly[[[dinitratocopper(II)]‐bis(μ‐2‐{4‐[(1H‐imidazol‐1‐yl)methyl]phenyl}‐5‐(pyridin‐4‐yl)‐1,3,4‐oxadiazole)]–methanol–water (1/1/0.65)], {[Cd( L )₂(NO₃)₂]·2CH₄O·0.65H₂O}_n, were obtained. The experimental results show that ligand L coordinates easily with linear Ag^I, tetrahedral Cu^I and octahedral Cd^II metal atoms to form one‐dimensional polymeric structures. The intermediate oxadiazole ring does not participate in the coordination interactions with the metal ions. In all three CPs, weak π–π interactions between the nearly coplanar pyridine, oxadiazole and benzene rings play an important role in the packing of the polymeric chains.     

Three‐dimensional hydrogen‐bonded framework structures in flunarizinium nicotinate and flunarizinediium bis(4‐toluenesulfonate) dihydrate

The structures of two salts of flunarizine, namely 1‐bis[(4‐fluorophenyl)methyl]‐4‐[(2E)‐3‐phenylprop‐2‐en‐1‐yl]piperazine, C₂₆H₂₆F₂N₂, are reported. In flunarizinium nicotinate {systematic name: 4‐bis[(4‐fluorophenyl)methyl]‐1‐[(2E)‐3‐phenylprop‐2‐en‐1‐yl]piperazin‐1‐ium pyridine‐3‐carboxylate}, C₂₆H₂₇F₂N₂⁺·C₆H₄NO₂⁻, (I), the two ionic components are linked by a short charge‐assisted N—H...O hydrogen bond. The ion pairs are linked into a three‐dimensional framework structure by three independent C—H...O hydrogen bonds, augmented by C—H...π(arene) hydrogen bonds and an aromatic π–π stacking interaction. In flunarizinediium bis(4‐toluenesulfonate) dihydrate {systematic name: 1‐[bis(4‐fluorophenyl)methyl]‐4‐[(2E)‐3‐phenylprop‐2‐en‐1‐yl]piperazine‐1,4‐diium bis(4‐methylbenzenesulfonate) dihydrate}, C₂₆H₂₈F₂N₂²⁺·2C₇H₇O₃S⁻·2H₂O, (II), one of the anions is disordered over two sites with occupancies of 0.832 (6) and 0.168 (6). The five independent components are linked into ribbons by two independent N—H...O hydrogen bonds and four independent O—H...O hydrogen bonds, and these ribbons are linked to form a three‐dimensional framework by two independent C—H...O hydrogen bonds, but C—H...π(arene) hydrogen bonds and aromatic π–π stacking interactions are absent from the structure of (II). Comparisons are made with some related structures.     

Temperature‐induced solid‐to‐solid transformation in helical homochiral coordination polymers

The reactions of (R)‐ and (S)‐4‐(1‐carboxyethoxy)benzoic acid (H₂CBA) with 1,3‐bis(2‐methyl‐1H‐imidazol‐1‐yl)benzene (1,3‐BMIB) ligands afforded a pair of homochiral coordination polymers (CPs), namely, poly[[[μ‐1,3‐bis(2‐methyl‐1H‐imidazol‐1‐yl)benzene][μ‐(S)‐4‐(1‐carboxylatoethoxy)benzoato]zinc(II)] monohydrate], {[Zn(C₁₀H₈O₅)(C₁₄H₁₄N₄)]·H₂O}_n or {[Zn{(S)‐CBA}(1,3‐BMIB)]·H₂O}_n ( 1‐L ), and poly[[[μ‐1,3‐bis(2‐methyl‐1H‐imidazol‐1‐yl)benzene][μ‐(R)‐4‐(1‐carboxylatoethoxy)benzoato]zinc(II)] monohydrate] ( 1‐D ). Three kinds of helical chains exist in compounds 1‐D and 1‐L , which are constructed from Zn^II atoms, 1,3‐BMIB ligands and/or CBA^2? ligands. When the as‐synthesized crystals of 1‐L and 1‐D were further heated in the mother liquor or air, poly[[μ‐1,3‐bis(2‐methyl‐1H‐imidazol‐1‐yl)benzene][μ‐(S)‐4‐(1‐carboxylatoethoxy)benzoato]zinc(II)], [Zn(C₁₀H₈O₅)(C₁₄H₁₄N₄)]_n or [Zn{(S)‐CBA}(1,3‐BMIB)]_n ( 2‐L ), and poly[[μ‐1,3‐bis(2‐methyl‐1H‐imidazol‐1‐yl)benzene][μ‐(R)‐4‐(1‐carboxylatoethoxy)benzoato]zinc(II)] ( 2‐D ) were obtained, respectively. The single‐crystal structure analysis revealed that 2‐L and 2‐D only contained one type of helical chain formed by Zn^II atoms and 1,3‐BMIB and CBA^2? ligands, which indicated that the helical chains were reconstructed though solid‐to‐solid transformation. This result not only means the realization of helical transformation, but also gives a feasible strategy to build homochiral CPs.     

Structural studies of (prop‐2‐en‐1‐yl)bis[(pyridin‐2‐yl)methylidene]amine hetero‐scorpionate copper complexes

The structures of five compounds consisting of (prop‐2‐en‐1‐yl)bis[(pyridin‐2‐yl)methylidene]amine complexed with copper in both the Cu^I and Cu^II oxidation states are presented, namely chlorido{(prop‐2‐en‐1‐yl)bis[(pyridin‐2‐yl)methylidene]amine‐κ³N,N′,N′′}copper(I) 0.18‐hydrate, [CuCl(C₁₅H₁₇N₃)]·0.18H₂O, (1), catena‐poly[[copper(I)‐μ₂‐(prop‐2‐en‐1‐yl)bis[(pyridin‐2‐yl)methylidene]amine‐κ⁵N,N′,N′′:C²,C³] perchlorate acetonitrile monosolvate], {[Cu(C₁₅H₁₇N₃)]ClO₄·CH₃CN}_n, (2), dichlorido{(prop‐2‐en‐1‐yl)bis[(pyridin‐2‐yl)methylidene]amine‐κ³N,N′,N′′}copper(II) dichloromethane monosolvate, [CuCl₂(C₁₅H₁₇N₃)]·CH₂Cl₂, (3), chlorido{(prop‐2‐en‐1‐yl)bis[(pyridin‐2‐yl)methylidene]amine‐κ³N,N′,N′′}copper(II) perchlorate, [CuCl(C₁₅H₁₇N₃)]ClO₄, (4), and di‐μ‐chlorido‐bis({(prop‐2‐en‐1‐yl)bis[(pyridin‐2‐yl)methylidene]amine‐κ³N,N′,N′′}copper(II)) bis(tetraphenylborate), [Cu₂Cl₂(C₁₅H₁₇N₃)₂][(C₆H₅)₄B]₂, (5). Systematic variation of the anion from a coordinating chloride to a noncoordinating perchlorate for two Cu^I complexes results in either a discrete molecular species, as in (1), or a one‐dimensional chain structure, as in (2). In complex (1), there are two crystallographically independent molecules in the asymmetric unit. Complex (2) consists of the Cu^I atom coordinated by the amine and pyridyl N atoms of one ligand and by the vinyl moiety of another unit related by the crystallographic screw axis, yielding a one‐dimensional chain parallel to the crystallographic b axis. Three complexes with Cu^II show that varying the anion composition from two chlorides, to a chloride and a perchlorate to a chloride and a tetraphenylborate results in discrete molecular species, as in (3) and (4), or a bridged bis‐μ‐chlorido complex, as in (5). Complex (3) shows two strongly bound Cl atoms, while complex (4) has one strongly bound Cl atom and a weaker coordination by one perchlorate O atom. The large noncoordinating tetraphenylborate anion in complex (5) results in the core‐bridged Cu₂Cl₂ moiety.     

Effects of two benzenedicarboxylic acids on the construction of CdII coordination polymers incorporating a flexible N‐donor ligand

Compared with the monomorphic type of ligand, combining mixed ligands in one coordination polymer offers greater tunability of the structural framework. Employment of N‐heterocyclic ligands and aromatic polycarboxylates is an effective approach for the construction of metal–organic frameworks (MOFs). Two new coordination polymers incorporating both 2‐[(1H‐imidazol‐1‐yl)methyl]‐1H‐benzimidazole (imb) and benzenedicarboxylic acid isomers, namely, catena‐poly[[[di‐μ‐chlorido‐bis[(2‐carboxybenzoato‐κ²O¹,O^1′)cadmium(II)]]‐bis{μ‐2‐[(1H‐imidazol‐1‐yl)methyl]‐1H‐benzimidazole‐κ²N:N′}] dihydrate], {[Cd(C₈H₅O₄)Cl(C₁₁H₁₀N₄)]·H₂O}_n, (I), and poly[[aqua(μ₂‐benzene‐1,3‐dicarboxylato‐κ³O¹,O^1′:O³){μ₂‐2‐[(1H‐imidazol‐1‐yl)methyl]‐1H‐benzimidazole‐κ²N:N′}cadmium(II)] dihydrate], {[Cd(C₈H₄O₄)(C₁₁H₁₀N₄)(H₂O)]·2H₂O}_n, (II), have been prepared and structurally characterized by single‐crystal X‐ray diffraction. In polymer (I), imb ligands bridge Cd^II ions, forming a one‐dimensional chain, and 2‐carboxybenzoate anions coordinate to the Cd^II ions in a terminal fashion. Polymer (II) exhibits a two‐dimensional network structure in which imb ligands and the benzene‐1,3‐dicarboxylate anions join Cd^II ions co‐operatively. This indicates that changing of the aromatic dicarboxylic acids can result in polymers with different compositions and architectures. Moreover, their IR spectra, PXRD (powder X‐ray diffraction) patterns, thermogravimetric analyses and fluorescence properties were also investigated.     

Syntheses,structures and characterization of isomorphous CoII and NiII coordination polymers based on 2‐[(1H‐imidazol‐1‐yl)methyl]‐6‐methyl‐1H‐benzimidazole and benzene‐1,4‐dicarboxylate

Careful choice of the organic ligands is one of the most important parameters in the rational design and synthesis of coordination polymers. Aromatic polycarboxylates have been widely used in the preparation of metal–organic polymers since they can utilize various coordination modes to form diverse structures and can act as hydrogen‐bond acceptors and donors in the assembly of supramolecular structures. Nitrogen‐heterocyclic organic compounds have also been used extensively as ligands for the construction of polymers with interesting structures. In the polymers catena‐poly[[[diaquabis{2‐[(1H‐imidazol‐1‐yl)methyl]‐6‐methyl‐1H‐benzimidazole‐κN ³}cobalt(II)]‐μ₂‐benzene‐1,4‐dicarboxylato‐κ²O ¹:O ⁴] dihydrate], {[Co(C₈H₄O₄)(C₁₂H₁₁N₄)₂(H₂O)₂]·2H₂O}_n , (I), and catena‐poly[[[diaquabis{2‐[(1H‐imidazol‐1‐yl)methyl]‐6‐methyl‐1H‐benzimidazole‐κN ³}nickel(II)]‐μ₂‐benzene‐1,4‐dicarboxylato‐κ²O ¹:O ⁴] dihydrate], {[Ni(C₈H₄O₄)(C₁₂H₁₁N₄)₂(H₂O)₂]·2H₂O}_n , (II), the Co^II or Ni^II ion lies on an inversion centre and exhibits a slightly distorted octahedral coordination geometry, coordinated by two N atoms from two imidazole rings and four O atoms from two monodentate carboxylate groups and two water molecules. The dicarboxylate ligands bridge metal ions forming a polymeric chain. The 2‐[(1H‐imidazol‐1‐yl)methyl]‐6‐methyl‐1H‐benzimidazole ligands coordinate to the Co^II or Ni^II centres in monodentate modes through an imidazole N atom and are pendant on opposite sides of the main chain. The two structures are isomorphous. In the crystal, the one‐dimensional chains are further connected through O—H…O, O—H…N and N—H…O hydrogen bonds, leading to a three‐dimensional supramolecular architecture. In addition, the IR spectroscopic properties, PXRD patterns, thermogravimetric behaviours and fluorescence properties of both polymers have been investigated.     

Two new NiII and ZnII metal–organic frameworks of glutarate and 1,4‐bis[(2‐methyl‐1H‐imidazol‐1‐yl)methyl]benzene ligands: syntheses,structures and luminescence sensing properties

Two new metal–organic frameworks (MOFs), namely, three‐dimensional poly[diaquabis{μ₂‐1,4‐bis[(2‐methyl‐1H‐imidazol‐1‐yl)methyl]benzene}bis(μ₂‐glutarato)dinickel(II)] monohydrate], {[Ni₂(C₅H₆O₄)₂(C₁₆H₁₈N₄)₂(H₂O)₂]·H₂O}_n or {[Ni₂(Glu)₂(1,4‐mbix)₂(H₂O)₂]·H₂O}_n, ( I ), and two‐dimensional poly[[{μ₂‐1,4‐bis[(2‐methyl‐1H‐imidazol‐1‐yl)methyl]benzene}(μ₂‐glutarato)zinc(II)] tetrahydrate], {[Zn(C₅H₆O₄)(C₁₆H₁₈N₄)]·4H₂O}_n or {[Zn(Glu)(1,4‐mbix)]·4H₂O}_n ( II ), have been synthesized hydrothermally using glutarate (Glu^2?) mixed with 1,4‐bis[(2‐methyl‐1H‐imidazol‐1‐yl)methyl]benzene (1,4‐mbix), and characterized by single‐crystal X‐ray diffraction, IR and UV–Vis spectroscopy, powder X‐ray diffraction, and thermogravimetric and photoluminescence analyses. Ni^II MOF ( I ) shows a 4‐connected 3D framework with point symbol 6⁶, but is not a typical dia network. Zn^II MOF ( II ) displays a two‐dimensional 4⁴‐ sql network with one‐dimensional water chains penetrating the grids along the c direction. The solid‐state photoluminescence analysis of ( II ) was performed at room temperature and the MOF exhibits highly selective sensing toward Fe³⁺ and Cr₂O₇^2? ions in aqueous solution.     

A self‐penetrated three‐dimensional zinc(II) coordination framework based on 4,4′,4′′‐(1,3,5‐triazine‐2,4,6‐triyl)tribenzoic acid and 1,3‐bis[(imidazol‐1‐yl)methyl]benzene ligands: synthesis,structure and properties

With the rapid development of metal–organic frameworks (MOFs), a variety of MOFs and their derivatives have been synthesized and reported in recent years. Commonly, multifunctional aromatic polycarboxylic acids and nitrogen‐containing ligands are employed to construct MOFs with fascinating structures. 4,4′,4′′‐(1,3,5‐Triazine‐2,4,6‐triyl)tribenzoic acid (H₃TATB) and the bidentate nitrogen‐containing ligand 1,3‐bis[(imidazol‐1‐yl)methyl]benzene (bib) were selected to prepare a novel Zn^II‐MOF under solvothermal conditions, namely poly[[tris{μ‐1,3‐bis[(imidazol‐1‐yl)methyl]benzene}bis[μ₃‐4,4′,4′′‐(1,3,5‐triazine‐2,4,6‐triyl)tribenzoato]trizinc(II)] dimethylformamide disolvate trihydrate], {[Zn₃(C₂₄H₁₂N₃O₆)₂(C₁₄H₁₄N₄)₃]·2C₃H₇NO·3H₂O}_n ( 1 ). The structure of 1 was characterized by single‐crystal X‐ray diffraction, IR spectroscopy and powder X‐ray diffraction. The properties of 1 were investigated by thermogravimetric and fluorescence analysis. Single‐crystal X‐ray diffraction shows that 1 belongs to the monoclinic space group Pc. The asymmetric unit contains three crystallographically independent Zn^II centres, two 4,4′,4′′‐(1,3,5‐triazine‐2,4,6‐triyl)tribenzoate (TATB^3?) anions, three complete bib ligands, one and a half free dimethylformamide molecules and three guest water molecules. Each Zn^II centre is four‐coordinated and displays a distorted tetrahedral coordination geometry. The Zn^II centres are connected by TATB^3? anions to form an angled ladder chain with large windows. Simultaneously, the bib ligands link Zn^II centres to give a helical Zn–bib–Zn chain. Furthermore, adjacent ladders are bridged by Zn–bib–Zn chains to form a fascinating three‐dimensional self‐penetrated framework with the short Schläfli symbol 6⁵·7·8¹³·9·10. In addition, the luminescence properties of 1 in the solid state and the fluorescence sensing of metal ions in suspension were studied. Significantly, compound 1 shows potential application as a fluorescent sensor with sensing properties for Zr⁴⁺ and Cu²⁺ ions.     

A one‐dimensional coordination polymer of 5‐[(imidazol‐1‐yl)methyl]benzene‐1,3‐dicarboxylic acid with CuII cations

5‐[(Imidazol‐1‐yl)methyl]benzene‐1,3‐dicarboxylic acid (H₂L) was synthesized and the dimethylformamide‐ and dimethylacetamide‐solvated structures of its adducts with Cu^II, namely catena‐poly[[copper(II)‐bis[μ‐3‐carboxy‐5‐[(imidazol‐1‐yl)methyl]benzoato]] dimethylformamide disolvate], {[Cu(C₁₂H₉N₂O₄)₂]·2C₃H₇NO}_n, (I), and catena‐poly[[copper(II)‐bis[μ‐3‐carboxy‐5‐[(imidazol‐1‐yl)methyl]benzoato]] dimethylacetamide disolvate], {[Cu(C₁₂H₉N₂O₄)₂]·2C₄H₉NO}_n, (II), the formation of which are associated with mono‐deprotonation of H₂L. The two structures are isomorphous and isometric. They consist of one‐dimensional coordination polymers of the organic ligand with Cu^II in a 2:1 ratio, [Cu(μ‐HL)₂]_n, crystallizing as the dimethylformamide (DMF) or dimethylacetamide (DMA) disolvates. The Cu^II cations are characterized by a coordination number of six, being located on centres of crystallographic inversion. In the polymeric chains, each Cu^II cation is linked to four neighbouring HL⁻ ligands, and the organic ligand is coordinated via Cu—O and Cu—N bonds to two Cu^II cations. In the corresponding crystal structures of (I) and (II), the coordination chains, aligned parallel to the c axis, are further interlinked by strong hydrogen bonds between the noncoordinated carboxy groups in one array and the coordinated carboxylate groups of neighbouring chains. Molecules of DMF and DMA (disordered) are accommodated at the interface between adjacent polymeric assemblies. This report provides the first structural evidence for the formation of coordination polymers with H₂Lvia multiple metal–ligand bonds through both carboxylate and imidazole groups.     

Synthesis,crystal structures,antiproliferative activities and reverse docking studies of eight novel Schiff bases derived from benzil

Eight novel Schiff bases derived from benzil dihydrazone ( BDH ) or benzil monohydrazone ( BMH ) and four fused‐ring carbonyl compounds (3‐formylindole, FI ; 3‐acetylindole, AI ; 3‐formyl‐1‐methylindole, MFI ; 1‐formylnaphthalene, FN ) were synthesized and characterized by elemental analysis, ESI–QTOF–MS, ¹H and ¹³C NMR spectroscopy, as well as single‐crystal X‐ray diffraction. They are (1Z,2Z)‐1,2‐bis{(E)‐[(1H‐indol‐3‐yl)methylidene]hydrazinylidene}‐1,2‐diphenylethane ( BDHFI ), C₃₂H₂₄N₆, (1Z,2Z)‐1,2‐bis{(E)‐[1‐(1H‐indol‐3‐yl)ethylidene]hydrazinylidene}‐1,2‐diphenylethane ( BDHAI ), C₃₄H₂₈N₆, (1Z,2Z)‐1,2‐bis{(E)‐[(1‐methyl‐1H‐indol‐3‐yl)methylidene]hydrazinylidene}‐1,2‐diphenylethane ( BMHMFI ) acetonitrile hemisolvate, C₃₄H₂₈N₆·0.5CH₃CN, (1Z,2Z)‐1,2‐bis{(E)‐[(naphthalen‐1‐yl)methylidene]hydrazinylidene}‐1,2‐diphenylethane ( BDHFN ), C₃₆H₂₆N₄, (Z)‐2‐{(E)‐[(1H‐indol‐3‐yl)methylidene]hydrazinylidene}‐1,2‐diphenylethanone ( BMHFI ), C₂₃H₁₇N₃O, (Z)‐2‐{(E)‐[1‐(1H‐indol‐3‐yl)ethylidene]hydrazinylidene}‐1,2‐diphenylethanone ( BMHAI ), C₂₄H₁₉N₃O, (Z)‐2‐{(E)‐[(1‐methyl‐1H‐indol‐3‐yl)methylidene]hydrazinylidene}‐1,2‐diphenylethanone ( BMHMFI ), C₂₄H₁₉N₃O, and (Z)‐2‐{(E)‐[(naphthalen‐1‐yl)methylidene]hydrazinylidene}‐1,2‐diphenylethanone ( BMHFN ) C₂₅H₁₈N₂O. Moreover, the in vitro cytotoxicity of the eight title compounds was evaluated against two tumour cell lines (A549 human lung cancer and 4T₁ mouse breast cancer) and two normal cell lines (MRC‐5 normal lung cells and NIH 3T3 fibroblasts) by MTT assay. The results indicate that four ( BDHMFI , BDHFN , BMHMFI and BMHFN ) are inactive and the other four ( BDHFI , BDHAI , BMHFI and BMHAI ) show severe toxicities against human A549 and mouse 4T₁ cells, similar to the standard cisplatin. All the compounds exhibited weaker cytotoxicity against normal cells than cancer cells. The Swiss Target Prediction web server was applied for the prediction of protein targets. After analyzing the differences in frequency hits between these active and inactive Schiff bases, 18 probable targets were selected for reverse docking with the Surflex‐dock function in SYBYL‐X 2.0 software. Three target proteins, i.e. human ether‐á‐go‐go‐related (hERG) potassium channel, the inhibitor of apoptosis protein 3 and serine/threonine‐protein kinase PIM1, were chosen as the targets. Finally, the ligand‐based structure–activity relationships were analyzed based on the putative protein target (hERG) docking results, which will be used to design and synthesize novel hERG ion channel inhibitors.     

Hydrogen phosphate and dihydrogen phosphate salts of 4‐amino­azobenzene

4‐Amino‐trans‐azobenzene {or 4‐[(E)‐phenyl­diazen­yl]aniline} can form isomeric salts depending on the site of protonation. Both orange bis{4‐[(E)‐phenyl­diazen­yl]anilinium} hydrogen phos­phate, 2C₁₂H₁₂N₃⁺·HPO₄²⁻, and purple 4‐[(E)‐phenyl­diazen­yl]­anilinium dihydrogen phosphate phosphoric acid solvate, C₁₂H₁₂N₃⁺·H₂PO₄⁻·H₃PO₄, (II), have layered structures formed through O—H⋯O and N—H⋯O hydrogen bonds. Additionally, azobenzene fragments in (I) are assembled through C—H⋯π inter­actions and in (II) through π–π inter­actions. Arguments for the colour difference are tentatively proposed.     

A concise and efficient synthesis of amino‐substituted (1H‐benzo[d]imidazol‐1‐yl)pyrimidine hybrids: synthetic sequence and the molecular and supramolecular structures of six examples

A concise and efficient synthesis of a series of amino‐substituted benzimidazole–pyrimidine hybrids has been developed, starting from the readily available N⁴‐(2‐aminophenyl)‐6‐methoxy‐5‐nitrosopyrimidine‐2,4‐diamine. In each of N⁵‐benzyl‐6‐methoxy‐4‐(2‐phenyl‐1H‐benzo[d]imidazol‐1‐yl)pyrimidine‐2,5‐diamine, C₂₅H₂₂N₆O, (I), 6‐methoxy‐N⁵‐(4‐methoxybenzyl)‐4‐[2‐(4‐methoxyphenyl)‐1H‐benzo[d]imidazol‐1‐yl]pyrimidine‐2,5‐diamine, C₂₇H₂₆N₆O₃, (III), 6‐methoxy‐N⁵‐(4‐nitrobenzyl)‐4‐[2‐(4‐nitrophenyl)‐1H‐benzo[d]imidazol‐1‐yl]pyrimidine‐2,5‐diamine, C₂₅H₂₀N₈O₅, (IV), the molecules are linked into three‐dimensional framework structures, using different combinations of N—H…N, N—H…O, C—H…O, C—H…N and C—H…π hydrogen bonds in each case. Oxidative cleavage of 6‐methoxy‐N⁵‐(4‐methylbenzyl)‐4‐[2‐(4‐methylphenyl)‐1H‐benzo[d]imidazol‐1‐yl]pyrimidine‐2,5‐diamine, (II), with diiodine gave 6‐methoxy‐4‐[2‐(4‐methylphenyl)‐1H‐benzo[d]imidazol‐1‐yl]pyrimidine‐2,5‐diamine, which crystallized as a monohydrate, C₁₉H₁₈N₆O·H₂O, (V), and reaction of (V) with trifluoroacetic acid gave two isomeric products, namely N‐{5‐amino‐6‐methoxy‐6‐[2‐(4‐methylphenyl)‐1H‐benzo[d]imidazol‐1‐yl]pyrimidin‐2‐yl}‐2,2,2‐trifluoroacetamide, which crystallized as an ethyl acetate monosolvate, C₂₁H₁₇F₃N₆O₂·C₄H₈O₂, (VI), and N‐{2‐amino‐6‐methoxy‐4‐[2‐(4‐methylphenyl)‐1H‐benzo[d]imidazol‐1‐yl]pyrimidin‐5‐yl}‐2,2,2‐trifluoroacetamide, which crystallized as a methanol monosolvate, C₂₁H₁₇F₃N₆O₂·CH₄O, (VIIa). For each of (V), (VI) and (VIIa), the supramolecular assembly is two‐dimensional, based on different combinations of O—H…N, N—H…O, N—H…N, C—H…O and C—H…π hydrogen bonds in each case. Comparisons are made with some related structures.     

1‐Carboxymethyl‐3‐methyl‐1H‐imidazol‐3‐ium chloride 2‐(3‐methyl‐1H‐imidazol‐3‐ium‐1‐yl)acetate monohydrate: a crystal stabilized by imidazolium zwitterions

The title compound, C₆H₉N₂O₂⁺·Cl⁻·C₆H₈N₂O₂·H₂O, contains one 2‐(3‐methyl‐1H‐imidazol‐3‐ium‐1‐yl)acetate inner salt molecule, one 1‐carboxymethyl‐3‐methyl‐1H‐imidazol‐3‐ium cation, one chloride ion and one water molecule. In the extended structure, chloride anions and water molecules are linked via O—H...Cl hydrogen bonds, forming an infinite one‐dimensional chain. The chloride anions are also linked by two weak C—H...Cl interactions to neighbouring methylene groups and imidazole rings. Two imidazolium moieties form a homoconjugated cation through a strong and asymmetric O—H...O hydrogen bond of 2.472 (2) Å. The IR spectrum shows a continuous D‐type absorption in the region below 1300 cm⁻¹ and is different to that of 1‐carboxymethyl‐3‐methylimidazolium chloride [Xuan, Wang & Xue (2012). Spectrochim. Acta Part A, 96 , 436–443].     

A new one‐dimensional CdII coordination polymer with a two‐dimensional layered structure incorporating 2‐[(1H‐imidazol‐1‐yl)methyl]‐1H‐benzimidazole and benzene‐1,2‐dicarboxylate ligands

The N‐heterocyclic ligand 2‐[(1H‐imidazol‐1‐yl)methyl]‐1H‐benzimidazole (imb) has a rich variety of coordination modes and can lead to polymers with intriguing structures and interesting properties. In the coordination polymer catena‐poly[[cadmium(II)‐bis[μ‐benzene‐1,2‐dicarboxylato‐κ⁴O¹,O^1′:O²,O^2′]‐cadmium(II)‐bis{μ‐2‐[(1H‐imidazol‐1‐yl)methyl]‐1H‐benzimidazole}‐κ²N²:N³;κ²N³:N²] dimethylformamide disolvate], {[Cd(C₈H₄O₄)(C₁₁H₁₀N₄)]·C₃H₇NO}_n, (I), each Cd^II ion exhibits an irregular octahedral CdO₄N₂ coordination geometry and is coordinated by four O atoms from two symmetry‐related benzene‐1,2‐dicarboxylate (1,2‐bdic²⁻) ligands and two N atoms from two symmetry‐related imb ligands. Two Cd^II ions are connected by two benzene‐1,2‐dicarboxylate ligands to generate a binuclear [Cd₂(1,2‐bdic)₂] unit. The binuclear units are further connected into a one‐dimensional chain by pairs of bridging imb ligands. These one‐dimensional chains are further connected through N—H…O hydrogen bonds and π–π interactions, leading to a two‐dimensional layered structure. The dimethylformamide solvent molecules are organized in dimeric pairs via weak interactions. In addition, the title polymer exhibits good fluorescence properties in the solid state at room temperature.     

Two novel bis‐azomethines derived from quinoxaline‐2‐carbaldehyde

The Schiff base compounds N,N′‐bis[(E)‐quinoxalin‐2‐ylmethylidene]propane‐1,3‐diamine, C₂₁H₁₈N₆, (I), and N,N′‐bis[(E)‐quinoxalin‐2‐ylmethylidene]butane‐1,4‐diamine, C₂₂H₂₀N₆, (II), crystallize in the monoclinic crystal system. These molecules have crystallographically imposed symmetry. Compound (I) is located on a crystallographic twofold axis and (II) is located on an inversion centre. The molecular conformations of these crystal structures are stabilized by aromatic π–π stacking interactions.     

Two nickel(II) bis[(pyridin‐2‐yl)methyl]amine complexes with homophthalic and benzene‐1,2,4,5‐tetracarboxylic acids

Two new Ni^II complexes involving the ancillary ligand bis[(pyridin‐2‐yl)methyl]amine (bpma) and two different carboxylate ligands, i.e. homophthalate [hph; systematic name: 2‐(2‐carboxylatophenyl)acetate] and benzene‐1,2,4,5‐tetracarboxylate (btc), namely catena‐poly[[aqua{bis[(pyridin‐2‐yl)methyl]amine‐κ³N,N′,N′′}nickel(II)]‐μ‐2‐(2‐carboxylatophenyl)aceteto‐κ²O:O′], [Ni(C₉H₆O₄)(C₁₂H₁₃N₃)(H₂O)]_n, and (μ‐benzene‐1,2,4,5‐tetracarboxylato‐κ⁴O¹,O²:O⁴,O⁵)bis(aqua{bis[(pyridin‐2‐yl)methyl]amine‐κ³N,N′,N′′}nickel(II)) bis(triaqua{bis[(pyridin‐2‐yl)methyl]amine‐κ³N,N′,N′′}nickel(II)) benzene‐1,2,4,5‐tetracarboxylate hexahydrate, [Ni₂(C₁₀H₂O₈)(C₁₂H₁₃N₃)₂(H₂O)₂]·[Ni(C₁₂H₁₃N₃)(H₂O)₃]₂(C₁₀H₂O₈)·6H₂O, (II), are presented. Compound (I) is a one‐dimensional polymer with hph acting as a bridging ligand and with the chains linked by weak C—H...O interactions. The structure of compound (II) is much more complex, with two independent Ni^II centres having different environments, one of them as part of centrosymmetric [Ni(bpma)(H₂O)]₂(btc) dinuclear complexes and the other in mononuclear [Ni(bpma)(H₂O)₃]²⁺ cations which (in a 2:1 ratio) provide charge balance for btc⁴⁻ anions. A profuse hydrogen‐bonding scheme, where both coordinated and crystal water molecules play a crucial role, provides the supramolecular linkage of the different groups.     

Syntheses and structures of three macrocyclic supramolecular complexes and one ZnII‐containing coordination polymer generated from a semi‐rigid multidentate N‐containing ligand

Semirigid organic ligands can adopt different conformations to construct coordination polymers with more diverse structures when compared to those constructed from rigid ligands. A new asymmetric semirigid organic ligand, 4‐{2‐[(pyridin‐3‐yl)methyl]‐2H‐tetrazol‐5‐yl}pyridine ( L ), has been prepared and used to synthesize three bimetallic macrocyclic complexes and one coordination polymer, namely, bis(μ‐4‐{2‐[(pyridin‐3‐yl)methyl]‐2H‐tetrazol‐5‐yl}pyridine)bis[dichloridozinc(II)] dichloromethane disolvate, [Zn₂Cl₄(C₁₂H₁₀N₆)₂]·2CH₂Cl₂, ( I ), the analogous chloroform monosolvate, [Zn₂Cl₄(C₁₂H₁₀N₆)₂]·CHCl₃, ( II ), bis(μ‐4‐{2‐[(pyridin‐3‐yl)methyl]‐2H‐tetrazol‐5‐yl}pyridine)bis[diiodidozinc(II)] dichloromethane disolvate, [Zn₂I₄(C₁₂H₁₀N₆)₂]·2CH₂Cl₂, ( III ), and catena‐poly[[[diiodidozinc(II)]‐μ‐4‐{2‐[(pyridin‐3‐yl)methyl]‐2H‐tetrazol‐5‐yl}pyridine] chloroform monosolvate], {[ZnI₂(C₁₂H₁₀N₆)]·CHCl₃}_n, ( IV ), by solution reaction with ZnX₂ (X = Cl and I) in a CH₂Cl₂/CH₃OH or CHCl₃/CH₃OH mixed solvent system at room temperature. Complex ( I ) is isomorphic with complex ( III ) and has a bimetallic ring possessing similar coordination environments for both of the Zn^II cations. Although complex ( II ) also contains a bimetallic ring, the two Zn^II cations have different coordination environments. Under the influence of the I^? anion and guest CHCl₃ molecule, complex ( IV ) displays a significantly different structure with respect to complexes ( I )–( III ). C—H…Cl and C—H…N hydrogen bonds, and π–π stacking or C—Cl…π interactions exist in complexes ( I )–( IV ), and these weak interactions play an important role in the three‐dimensional structures of ( I )–( IV ) in the solid state. In addition, the fluorescence properties of L and complexes ( I )–( IV ) were investigated.     

Two new cadmium(II) coordination polymers based on imidazole‐containing ligands: synthesis,structural characterization and fluorescence properties

The judicious selection of suitable ligands is vitally important in the construction of novel metal–organic frameworks (MOFs) with fascinating structures and interesting properties. Recently, imidazole‐containing multidentate ligands have received much attention. Two new Cd^II coordination frameworks, namely, poly[tris{μ‐1,4‐bis[(1H‐imidazol‐1‐yl)methyl]benzene‐κ²N³:N^3′}tetrakis(nitrato‐κ²O,O′)dicadmium], [Cd₂(NO₃)₄(C₁₄H₁₄N₄)₃]_n, (I), and poly[[bis{μ₃‐1,3,5‐tris[(1H‐imidazol‐1‐yl)methyl]benzene‐κ³N³:N^3′:N^3′′}cadmium] hexafluorosilicate], {[Cd(C₁₈H₁₈N₆)₂](SiF₆)}_n, (II), have been synthesized and characterized by elemental analysis, IR spectroscopy and single‐crystal X‐ray diffraction. In polymer (I), the 1,4‐bis[(1H‐imidazol‐1‐yl)methyl]benzene ligand bridges Cd²⁺ ions with a distorted seven‐coordinated pentagonal bipyramidal geometry, forming a one‐dimensional ladder chain, and the nitrate anions coordinate to the Cd²⁺ ions in a terminal bidentate fashion. In the crystal, adjacent chains are further connected by C—H…O hydrogen bonds to generate a two‐dimensional (2D) supramolecular structure. Polymer (II) exhibits a 2D layered structure in which 1,3,5‐tris[(1H‐imidazol‐1‐yl)methyl] benzene ligands join Cd²⁺ centres having a six‐coordinated octahedral structure. The layers are connected by hexafluorosilicate anions via C—H…F hydrogen‐bond interactions, giving rise to a three‐dimensional supramolecular network structure in the solid state. In addition, powder X‐ray diffraction (PXRD) patterns were recorded, thermogravimetric analyses (TGA) carried out and fluorescence properties investigated.