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1.
Fernando A. Figueredo Julio R. Maza Steven R. Kirk Samantha Jenkins 《International journal of quantum chemistry》2014,114(24):1697-1706
Within the quantum theory of atoms in molecules (QTAIM) framework we present a quantum topology phase diagram (QTPD) using the Poincaré–Hopf relation of a total of 17 all new QTAIM topologies of the cis‐ and trans‐isomers of the cyclic contryphan‐Sm peptide. The resultant QTPD consists of separate regions for the cis‐ and trans‐isomers that only overlap for topologies associated with the lowest energy minima of the cis‐ and trans‐isomers. We determine the QTAIM topologies of 29 “missing” isomers. A new, contracted formulation of the QTPD is presented, this contracted formulation includes the interamino acid bond critical points (BCPs) that link together the amino acid units, the disulphide bridge “pivot” BCP and side chain bonding interactions. The seven interamino acid BCPs linking the amino acid units coincide with the so‐called peptide backbone, the conventional qualitative approach to reduce the complexity of the peptide. We expand the interpretation of ellipticity to include the associated eigenvectors and find that higher values of the ellipticity ? are associated with a greater preference to conserve folding states. We quantify previous qualitative findings that suggested the disulfide bond is central to the folding behavior of the cyclic contryphan‐Sm peptide and why the cis‐isomer is the major form of the cyclic contryphan‐Sm peptide. © 2014 Wiley Periodicals, Inc. 相似文献
2.
Samantha Jenkins Chen‐Xia Xiao Tianlv Xu Dulin Yin Steven R. Kirk Gregory A. Chass 《International journal of quantum chemistry》2015,115(14):875-883
The purpose of this exploratory investigation is to characterize, contrast, and explain the differences between efficient Ni(π‐allyl)2 and inefficient Pd(π‐allyl)2 systems in the catalyzed cross‐coupling of alkanes. Within the framework of the quantum theory of atoms in molecules, we have created quantum topology phase diagrams (QTPDs) for nonisomeric species by the creation of aggregate‐isomers; simple sum rules are introduced to ensure that the Poincaré‐Hopf relation is obeyed. We show that the catalyzed reaction cycles can be represented as a directed QTPD where each species of the main reaction cycle forms a closed loop. The topological position of the unwanted side products relative to the main reaction cycle for each catalyst is also considered. We find the more efficient Ni(π‐allyl)2 catalyst produces a reaction cycle on the QTPD that contains no “missing” topologies, preferentially proceeding to desired product at 94% yield, while avoiding wasteful side‐product pathways, disconnected from the major pathway by “missing” topologies. The converse is true for the less efficient Pd(π‐allyl)2 catalyst, whose reaction pathway markedly bifurcates to final yields of 56% and 44% for product and side‐product, respectively. We subsequently used our nearest neighbor ring‐critical point approach to show that the species of the main reaction cycle of the efficient Ni(π‐allyl)2 catalyst facilitates the desired chemical transformation whilst more effectively barring the formation of unwanted side product, with respect to the inefficient Pd(π‐allyl)2 catalyst. The findings from the QTPD analysis are in agreement with traditional energetic‐barrier interpretations of reaction pathway preference. © 2015 Wiley Periodicals, Inc. 相似文献
3.
Leonard M. Khalilov Ekaterina S. Mescheryakova Kamil Sh. Bikmukhametov Nataliya N. Makhmudiyarova Kamil R. Shangaraev Arthur R. Tulyabaev 《Acta Crystallographica. Section C, Structural Chemistry》2019,75(10):1439-1447
Single crystals of (2S,5R)‐2‐isopropyl‐5‐methyl‐7‐(5‐methylisoxazol‐3‐yl)cyclohexanespiro‐3′‐(1,2,4,5,7‐tetraoxazocane), C16H26N2O5, have been studied via X‐ray diffraction. The tetraoxazocane ring adopts a boat–chair conformation in the crystalline state, which is due to intramolecular interactions. Conformational analysis of the tetraoxazocane fragment performed at the B3LYP/6‐31G(d,2p) level of theory showed that there are three minima on the potential energy surface, one of which corresponds to the conformation realized in the solid state, but not to a global minimum. Analysis of the geometry and the topological parameters of the electron density at the (3,?1) bond critical points (BCPs), and the charge transfer in the tetraoxazocane ring indicated that there are stereoelectronic effects in the O—C—O and N—C—O fragments. There is a two‐cross hyperconjugation in the N—C—O fragment between the lone electron pair of the N atom (lpN) and the antibonding orbital of a C—O bond (σ*C—O) and vice versa between lpO and σ*C—N. The oxazole substituent has a considerable effect on the geometry and the topological parameters of the electron density at the (3,?1) BCPs of the tetraoxazocane ring. The crystal structure is stabilized via intermolecular C—H…N and C—H…O hydrogen bonds, which is unambiguously confirmed with PIXEL calculations, a quantum theory of atoms in molecules (QTAIM) topological analysis of the electron density at the (3,?1) BCPs and a Hirshfeld analysis of the electrostatic potential. The molecules form zigzag chains in the crystal due to intermolecular C—H…N interactions being electrostatic in origin. The molecules are further stacked due to C—H…O hydrogen bonds. The dispersion component in the total stabilization energy of the crystal lattice is 68.09%. 相似文献
4.
Samantha Jenkins 《International journal of quantum chemistry》2013,113(11):1603-1608
The need to make more quantitative use of the total electronic charge density distribution is demonstrated in this short perspective. This is framed in the perspective of the ground breaking early work of Bader and coworkers, along with mathematicians who captured the essential nature of a molecule in a suitably compact form in real space. We see that this simple form is the Poincaré–Hopf relation for molecules and clusters and the Euler–Hopf relation in solids. Thom's theory of elementary catastrophes combined with the Poincaré–Hopf relation provides the inspiration for the new quantum topology. An alternative use of the Poincaré–Hopf relation, molecular recognition, is discussed. Quantum topology is then used to create a topology phase diagram for both molecules and solids. The author adds their perspectives of the huge potential of the quantum topology approach by demonstrating the ease with which new theoretical ideas can be generated. © 2013 Wiley Periodicals, Inc. 相似文献
5.
The energies, geometries and harmonic vibrational frequencies of 1:1 5‐hydroxytryptamine‐water (5‐HT‐H2O) complexes are studied at the MP2/6‐311++G(d,p) level. Natural bond orbital (NBO), quantum theory of atoms in molecules (QTAIM) analyses and the localized molecular orbital energy decomposition analysis (LMO‐EDA) were performed to explore the nature of the hydrogen‐bonding interactions in these complexes. Various types of hydrogen bonds (H‐bonds) are formed in these 5‐HT‐H2O complexes. The intermolecular C4H55‐HT···Ow H‐bond in HTW3 is strengthened due to the cooperativity, whereas no such cooperativity is found in the other 5‐HT‐H2O complexes. H‐bond in which nitrogen atom of amino in 5‐HT acted as proton donors was stronger than other H‐bonds. Our researches show that the hydrogen bonding interaction plays a vital role on the relative stabilities of 5‐HT‐H2O complexes. 相似文献
6.
José Manuel Guevara‐Vela Rodrigo Chávez‐Calvillo Prof. Dr. Marco García‐Revilla Prof. Dr. Jesús Hernández‐Trujillo Prof. Dr. Ove Christiansen Prof. Dr. Evelio Francisco Prof. Dr. Ángel Martín Pendás Prof. Dr. Tomás Rocha‐Rinza 《Chemistry (Weinheim an der Bergstrasse, Germany)》2013,19(42):14304-14315
The cooperative effects of hydrogen bonding in small water clusters (H2O)n (n=3–6) have been studied by using the partition of the electronic energy in accordance with the interacting quantum atoms (IQA) approach. The IQA energy splitting is complemented by a topological analysis of the electron density (ρ( r )) compliant with the quantum theory of atoms‐in‐molecules (QTAIM) and the calculation of electrostatic interactions by using one‐ and two‐electron integrals, thereby avoiding convergence issues inherent to a multipolar expansion. The results show that the cooperative effects of hydrogen bonding in small water clusters arise from a compromise between: 1) the deformation energy (i.e., the energy necessary to modify the electron density and the configuration of the nuclei of the isolated water molecules to those within the water clusters), and 2) the interaction energy (Eint) of these contorted molecules in (H2O)n. Whereas the magnitude of both deformation and interaction energies is enhanced as water molecules are added to the system, the augmentation of the latter becomes dominant when the size of the cluster is increased. In addition, the electrostatic, classic, and exchange components of Eint for a pair of water molecules in the cluster (H2O)n?1 become more attractive when a new H2O unit is incorporated to generate the system (H2O)n with the last‐mentioned contribution being consistently the most important part of Eint throughout the hydrogen bonds under consideration. This is opposed to the traditional view, which regards hydrogen bonding in water as an electrostatically driven interaction. Overall, the trends of the delocalization indices, δ(Ω,Ω′), the QTAIM atomic charges, the topology of ρ( r ), and the IQA results altogether show how polarization, charge transfer, electrostatics, and covalency contribute to the cooperative effects of hydrogen bonding in small water clusters. It is our hope that the analysis presented in this paper could offer insight into the different intra‐ and intermolecular interactions present in hydrogen‐bonded systems. 相似文献
7.
Takayoshi Ishimoto Masanori Tachikawa Umpei Nagashima 《International journal of quantum chemistry》2006,106(7):1465-1476
We analyzed the exponent (α) values in Gaussian‐type functions (GTF) for protons and deuterons in BH3, CH4, NH3, H2O, HF, and their deuterated molecules for the development of nuclear basis functions, which are used for molecular orbital (MO) calculations that directly include nuclear quantum effects. The optimized α (αopt) value in the single s‐type ([1s]) GTF for protons is changed due to the difference in flexibility of the electronic basis sets. The difference between the energy obtained by using the αopt value for each molecule and that obtained by using the average α (αave) value for these exponents with the 6‐31G(d,p) electronic basis function is only 2 × 10?5 a.u. The αave values of protonic and deuteronic [1s] GTFs by the present calculation are 24.1825 and 35.6214, respectively. We found that the αave values enable the evaluation of the total energy and the geometrical changes in hydrogen bonding, such as O…H? O, O…H? N, and O…H? C, while the αopt value became small by forming a hydrogen bond. The result using only the [1s] GTF for the protonic and deuteronic basis functions is sufficient to explain the differences of energy and geometry induced by the H/D isotope effect, although the total energy of ~5 × 10?4 a.u. was improved by using the s‐, p‐, and d‐type ([1s1p1d]) GTFs for protons and deuterons. We clearly demonstrate that the protonic and deuteronic basis functions based on the αave value enable us to apply the method to other sample molecules (glycine, malonaldehyde, and formic acid dimer). The protonic and deuteronic basis functions we developed treat the quantum effects of protons and deuterons effectively and extend the application range of the MO calculation to include nuclear quantum effects. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2006 相似文献
8.
Banafsheh Vahdani Alviri Mehrdad Pourayoubi Abolghasem Farhadipour Manpreet Kaur Jerry P. Jasinski 《Acta Crystallographica. Section C, Structural Chemistry》2019,75(10):1424-1433
The asymmetric unit of O,O′‐dimethyl [(2,3,4,5,6‐pentafluorophenyl)hydrazinyl]phosphonate, C8H8F5N2O3P, is composed of two symmetry‐independent molecules with significant differences in the orientations of the C6F5 and OMe groups. In the crystal structure, a one‐dimensional assembly is mediated from classical N—H…O hydrogen bonds, which includes R22(8), D(2) and some higher‐order graph‐set motifs. By also considering weak C—H…O=P and C—H…O—C intermolecular interactions, a two‐dimensional network extends along the ab plane. The strengths of the hydrogen bonds were evaluated using quantum chemical calculations with the GAUSSIAN09 software package at the B3LYP/6‐311G(d,p) level of theory. The LP(O) to σ*(NH) and σ*(CH) charge‐transfer interactions were examined according to second‐order perturbation theory in natural bond orbital (NBO) methodology. The hydrogen‐bonded clusters of molecules, including N—H…O and C—H…O interactions, were constructed as input files for the calculations and the strengths of the hydrogen bonds are as follows: N—H…O [R22(8)] > N—H…O [D(2)] > C—H…O. The decomposed fingerprint plots show that the contribution portions of the F…H/H…F contacts in both molecules are the largest. 相似文献
9.
10.
Xiao-Qing Cai Bei Tian Jian-Nan Zhang Zhi-Min Jin 《Acta Crystallographica. Section C, Structural Chemistry》2016,72(10):720-723
A fixed hydrogen‐bonding motif with a high probability of occurring when appropriate functional groups are involved is described as a `supramolecular hydrogen‐bonding synthon'. The identification of these synthons may enable the prediction of accurate crystal structures. The rare chiral hydrogen‐bonding motif R53(10) was observed previously in a cocrystal of 2,4,6‐trichlorophenol, 2,4‐dichlorophenol and dicyclohexylamine. In the title solvated salt, 2C4H12N+·C6H3Cl2O−·(C6H3Cl2O−·C6H4Cl2O)·2C4H8O, five components, namely two tert‐butylammonium cations, one 2,4‐dichlorophenol molecule, one 2,4‐dichlorophenolate anion and one 2,6‐dichlorophenolate anion, are bound by N—H…O and O—H…O hydrogen bonds to form a hydrogen‐bonded ring, with the graph‐set motif R53(10), which is further associated with two pendant tetrahydrofuran molecules by N—H…O hydrogen bonds. The hydrogen‐bonded ring has internal symmetry, with a twofold axis running through the centre of the 2,6‐dichlorophenolate anion, and is isostructural with a previous and related structure formed from 2,4‐dichlorophenol, dicyclohexylamine and 2,4,6‐trichlorophenol. In the title crystal, helical columns are built by the alignment and twisting of the chiral hydrogen‐bonded rings, along and across the c axis, and successive pairs of rings are associated with each other through C—H…π interactions. Neighbouring helical columns are inversely related and, therefore, no chirality is sustained, in contrast to the previous case. 相似文献
11.
Multicomponent Molecular Orbital–Climbing Image–Nudged Elastic Band Method to Analyze Chemical Reactions Including Nuclear Quantum Effect 下载免费PDF全文
To analyze the H/D isotope effects on hydrogen transfer reactions in XHCHCHCHY?XCHCHCHYH (X, Y=O, NH, or CH2) including the nuclear quantum effect of proton and deuteron, we propose a multicomponent molecular orbital‐climbing image‐nudged elastic band (MC_MO–CI–NEB) method. We obtain not only transition state structures but also minimum‐energy paths (MEPs) on the MC_MO effective potential energy surface by using MC_MO–CI–NEB method. We find that nuclear quantum effect affects not only stationary‐point geometries but also MEPs and electronic structures in the reactions. We clearly demonstrate the importance of including nuclear quantum effects for H/D isotope effect on rate constants (kH/kD). 相似文献
12.
Svitlana V. Shishkina Irina S. Konovalova Sergiy M. Kovalenko Dmitriy V. Kravchenko Natalya D. Bunyatyan 《Acta Crystallographica. Section C, Structural Chemistry》2021,77(1):40-48
Being a close analogue of amflutizole, methyl 4‐amino‐3‐phenylisothiazole‐5‐carboxylate (C11H10N2O2S) was assumed to be capable of forming polymorphic structures. Noncentrosymmetric and centrosymmetric polymorphs have been obtained by crystallization from a series of more volatile solvents and from denser tetrachloromethane, respectively. Identical conformations of the molecule are found in both structures. The two polymorphs differ mainly in the intermolecular interactions formed by the amino group and in the type of stacking interactions between the π‐systems. The most effective method for revealing packing motifs in structures with intermolecular interactions of different types (hydrogen bonding, stacking, dispersion, etc.) is to study the pairwise interaction energies using quantum chemical calculations. Molecules form a column as the primary basic structural motif due to stacking interactions in both polymorphic structures under study. The character of a column (straight or zigzag) is determined by the orientations of the stacked molecules (in a `head‐to‐head' or `head‐to‐tail' manner). Columns bound by intermolecular N—H…O and N—H…N hydrogen bonds form a double column as the main structural motif in the noncentrosymmetric structure. Double columns in the noncentrosymmetric structure and columns in the centrosymmetric structure interact strongly within the ab crystallographic plane, forming a layer as a secondary basic structural motif. The noncentrosymmetric structure has a lower density and a lower (by 0.59 kJ mol?1) lattice energy, calculated using periodic calculations, compared to the centrosymmetric structure. 相似文献
13.
Joanna Bojarska Milan Remko Izabela D. Madura Krzysztof Kaczmarek Janusz Zabrocki Wojciech M. Wolf 《Acta Crystallographica. Section C, Structural Chemistry》2020,76(4):328-345
Recently, fluorenylmethoxycarbonyl (Fmoc) amino acids (e.g. Fmoc–tyrosine or Fmoc–phenylalanine) have attracted growing interest in biomedical research and industry, with special emphasis directed towards the design and development of novel effective hydrogelators, biomaterials or therapeutics. With this in mind, a systematic knowledge of the structural and supramolecular features in recognition of those properties is essential. This work is the first comprehensive summary of noncovalent interactions combined with a library of supramolecular synthon patterns in all crystal structures of amino acids with the Fmoc moiety reported so far. Moreover, a new Fmoc‐protected amino acid, namely, 2‐{[(9H‐fluoren‐9‐ylmethoxy)carbonyl](methyl)amino}‐3‐{4‐[(2‐hydroxypropan‐2‐yl)oxy]phenyl}propanoic acid or N‐fluorenylmethoxycarbonyl‐O‐tert‐butyl‐N‐methyltyrosine, Fmoc‐N‐Me‐Tyr(t‐Bu)‐OH, C29H31NO5, was successfully synthesized and the structure of its unsolvated form was determined by single‐crystal X‐ray diffraction. The structural, conformational and energy landscape was investigated in detail by combined experimental and in silico approaches, and further compared to N‐Fmoc‐phenylalanine [Draper et al. (2015). CrystEngComm, 42 , 8047–8057]. Geometries were optimized by the density functional theory (DFT) method either in vacuo or in solutio. The polarizable conductor calculation model was exploited for the evaluation of the hydration effect. Hirshfeld surface analysis revealed that H…H, C…H/H…C and O…H/H…O interactions constitute the major contributions to the total Hirshfeld surface area in all the investigated systems. The molecular electrostatic potentials mapped over the surfaces identified the electrostatic complementarities in the crystal packing. The prediction of weak hydrogen‐bonded patterns via Full Interaction Maps was computed. Supramolecular motifs formed via C—H…O, C—H…π, (fluorenyl)C—H…Cl(I), C—Br…π(fluorenyl) and C—I…π(fluorenyl) interactions are observed. Basic synthons, in combination with the Long‐Range Synthon Aufbau Modules, further supported by energy‐framework calculations, are discussed. Furthermore, the relevance of Fmoc‐based supramolecular hydrogen‐bonding patterns in biocomplexes are emphasized, for the first time. 相似文献
14.
Georgii Bogdanov John P. Tillotson Victor N. Khrustalev Sergei Rigin Tatiana V. Timofeeva 《Acta Crystallographica. Section C, Structural Chemistry》2019,75(11):1554-1561
The three organic two‐photon‐absorbing cycloalkanone chromophores 2,4‐bis[4‐(diethylamino)benzylidene]cyclobutanone, C26H32N2O ( I ), 2,5‐bis[4‐(diethylamino)benzylidene]cyclopentanone, C27H34N2O ( II ), and 2,6‐bis[4‐(diethylamino)benzylidene]cyclohexanone, C28H36N2O ( III ), were obtained by a reaction between 4‐(diethylamino)benzaldehyde and the corresponding cycloalkanone and were characterized by single‐crystal X‐ray diffraction studies, as well as density functional theory (DFT) quantum‐chemical calculations. Molecules of this series have three main fragments, i.e. central acceptor (A) and two terminal donors (D1 and D2) and represent examples of the D1–π–A–π–D2 molecular design. All three compounds crystallize with two crystallographically independent molecules in the asymmetric unit ( A and B ) and are distinguished by the conformations of both the molecular Et2N—C6H4—C=C—C(=O)—C=C—C6H4—NEt2 backbone (arcuate or linear) and the terminal diethylamino substituents (syn‐ or antiperiplanar to the plane of the molecule). The central four‐ and five‐membered rings in I and II are almost planar, and the six‐membered ring in III adopts a sofa conformation. In the crystals of I – III , the two independent molecules A and B form hydrogen‐bonded [ A … B ] dimers via intermolecular C—H…O hydrogen bonds. Furthermore, the [ A … B ] dimers in I are bound by intermolecular C—H…O hydrogen bonds into two‐tier puckered layers, whereas in the crystals of II and III , the [ A … B ] dimers are stacked along the c and a axes, respectively. Taking into account the decreasing steric strain upon expanding the central ring, compound I might be more efficient as a two‐photon absorption chromophore than compounds II and III , which corresponds to the results of spectroscopic studies. 相似文献
15.
Kang Zheng Changjian Xie Xiaowei Li Weiwei Wu Ao Li Shaosong Qian Qiuxiang Pang 《Acta Crystallographica. Section C, Structural Chemistry》2020,76(5):389-397
The crystal structures of the antimicrobial drug tinidazole [ TNZ ; systematic name: 1‐(2‐ethylsulfonylethyl)‐2‐methyl‐5‐nitroimidazole, C8H13N3O4S] and the 1:1 cocrystal of TNZ with the naturally occurring compound vanillic acid ( VA ; systematic name: 4‐hydroxy‐3‐methoxybenzoic acid, C8H8O4), namely, the TNZ – VA cocrystal, were determined by single‐crystal X‐ray analysis at 100 K. The supramolecular structure of the TNZ – VA cocrystal is composed of a carboxylic acid dimer and an O—H…N(heterocycle) synthon in the form of layers made up of O—H…N and O—H…O hydrogen bonds. The layers are joined via C—H…O hydrogen bonds, π–π stacking and C—H…π interactions. The energy framework analysis, together with interaction energy calculations using the DLPNO‐CCSD(T) method, indicates that the TNZ – VA cocrystal inherits strong interactions from the TNZ and VA crystals, which accounts for the enhanced thermal stability and reduced dissolution rate. To the best of our knowledge, this is the first example of a cocrystal containing TNZ . 相似文献
16.
Rathawat Daengngern Osamu Kobayashi Nawee Kungwan Chanisorn Ngaojampa Masanori Tachikawa 《International journal of quantum chemistry》2020,120(10):e26179
Nuclear quantum and H/D isotope effects of bridging and terminal hydrogen atoms of diborane (B2H6) molecules were systematically studied by classical ab initio molecular dynamics (CLMD) and ab initio path integral molecular dynamics (PIMD) simulations with BHandHLYP/6-31++G** level of theory at room temperature (298.15 K). Calculated results clearly show that H/D isotope effect appears in the distribution of hydrogen (deuterium) of B2H6 (B2D6). Geometry of B2H6 also plays a significant role in the nuclear quantum effect proved by PIMD simulations, but slightly deviated from its equilibrium structure when simulated via CLMD simulation. The bond lengths between boron atoms R (B1 … B2) and the bridging hydrogen atoms RHH (HB1 … HB2) of the B2H6 molecule obtained from PIMD simulations are slightly longer than those of the deuterated form of the diborane (B2D6) molecule. The principal component analysis (PCA) was also employed to distinguish the important modes of bridging hydrogen as related to the nuclear quantum and H/D isotope effects. The highest level of contribution obtained from PCA of PIMD simulations is bending, while various mixed vibrations with less contribution were also found. Therefore, the nuclear quantum and H/D isotope effects need to be taken into account for a better understanding of diborane geometry. 相似文献
17.
Eric Bosch 《Acta Crystallographica. Section C, Structural Chemistry》2016,72(10):748-752
Weak interactions between organic molecules are important in solid‐state structures where the sum of the weaker interactions support the overall three‐dimensional crystal structure. The sp‐C—H…N hydrogen‐bonding interaction is strong enough to promote the deliberate cocrystallization of a series of diynes with a series of dipyridines. It is also possible that a similar series of cocrystals could be formed between molecules containing a terminal alkyne and molecules which contain carbonyl O atoms as the potential hydrogen‐bond acceptor. I now report the crystal structure of two cocrystals that support this hypothesis. The 1:1 cocrystal of 1,4‐diethynylbenzene with 1,3‐diacetylbenzene, C10H6·C10H10O2, (1), and the 1:1 cocrystal of 1,4‐diethynylbenzene with benzene‐1,4‐dicarbaldehyde, C10H6·C8H6O2, (2), are presented. In both cocrystals, a strong nonconventional ethynyl–carbonyl sp‐C—H…O hydrogen bond is observed between the components. In cocrystal (1), the C—H…O hydrogen‐bond angle is 171.8 (16)° and the H…O and C…O hydrogen‐bond distances are 2.200 (19) and 3.139 (2) Å, respectively. In cocrystal (2), the C—H…O hydrogen‐bond angle is 172.5 (16)° and the H…O and C…O hydrogen‐bond distances are 2.25 (2) and 3.203 (2) Å, respectively. 相似文献
18.
《Acta Crystallographica. Section C, Structural Chemistry》2017,73(6):481-485
In solid‐state engineering, cocrystallization is a strategy actively pursued for pharmaceuticals. Two 1:1 cocrystals of 5‐fluorouracil (5FU; systematic name: 5‐fluoro‐1,3‐dihydropyrimidine‐2,4‐dione), namely 5‐fluorouracil–5‐bromothiophene‐2‐carboxylic acid (1/1), C5H3BrO2S·C4H3FN2O2, (I), and 5‐fluorouracil–thiophene‐2‐carboxylic acid (1/1), C4H3FN2O2·C5H4O2S, (II), have been synthesized and characterized by single‐crystal X‐ray diffraction studies. In both cocrystals, carboxylic acid molecules are linked through an acid–acid R 22(8) homosynthon (O—H…O) to form a carboxylic acid dimer and 5FU molecules are connected through two types of base pairs [homosynthon, R 22(8) motif] via a pair of N—H…O hydrogen bonds. The crystal structures are further stabilized by C—H…O interactions in (II) and C—Br…O interactions in (I). In both crystal structures, π–π stacking and C—F…π interactions are also observed. 相似文献
19.
Liang Qiao Xiao-Gang Chen Ji-Xing Gao Yong Ai 《Acta Crystallographica. Section C, Structural Chemistry》2019,75(6):728-733
The crystal structures of three quinuclidine‐based compounds, namely (1‐azabicyclo[2.2.2]octan‐3‐ylidene)hydrazine monohydrate, C7H13N3·H2O ( 1 ), 1,2‐bis(1‐azabicyclo[2.2.2]octan‐3‐ylidene)hydrazine, C14H22N4 ( 2 ), and 1,2‐bis(1‐azoniabicyclo[2.2.2]octan‐3‐ylidene)hydrazine dichloride, C14H24N42+·2Cl? ( 3 ), are reported. In the crystal structure of 1 , the quinuclidine‐substituted hydrazine and water molecules are linked through N—H…O and O—H…N hydrogen bonds, forming a two‐dimensional array. The compound crystallizes in the centrosymmetric space group P21/c. Compound 2 was refined in the space group Pccn and exhibits no hydrogen bonding. However, its hydrochloride form 3 crystallizes in the noncentrosymmetric space group Pc. It shows a three‐dimensional network structure via intermolecular hydrogen bonding (N—H…C and N/C—H…Cl). Compound 3 , with its acentric structure, shows strong second harmonic activity. 相似文献
20.
Li‐Juan Chen Zheng‐Guo Zhao Ming‐Xing Yang Xiao‐Hua Chen 《Acta Crystallographica. Section C, Structural Chemistry》2009,65(10):m374-m376
The title neutral polymer, [Gd(C6H4NO2)(C8H4O4)(H2O)2]n, contains an extended two‐dimensional wave‐like lanthanide carboxylate layer decorated by isonicotinate (IN) ligands. The GdII atom is eight‐coordinated by four carboxylate O atoms from four benzene‐1,2‐dicarboxylate (1,2‐bdc) ligands, two 1,2‐bdc carboxylate O atoms from one chelating IN ligand and two terminal water molecules, forming a bicapped trigonal–prismatic coordination geometry. The wave‐like layers are stacked in an …ABAB… packing mode along the c‐axis direction. Strong hydrogen‐bonding interactions further stabilize the structure of the title compound. 相似文献