Microporous Molecular Materials from Dipeptides Containing Non‐proteinogenic Residues

Dipeptides with two hydrophobic side chains have proved to be an exceptional source of microporous organic materials, but since previous structures were limited to the incorporation of only proteinogenic residues, their full potential as adsorbents has remained unexplored. Single‐crystal XRD data for ten new compounds with non‐proteinogenic L ‐2‐aminobutanoic acid and/or L ‐2‐amino‐pentanoic acid are presented. The gas‐phase accessibility of their crystal pores, with cross‐sections of 2.3 to 5.1 Å, was monitored by CO₂ and CH₄ adsorption isotherms. Included CO₂ was also detected spectroscopically by 2D MAS NMR. An extensive conformational analysis reveals that the use of linear rather than branched side chains (such as L ‐valine and L ‐isoleucine) affords peptides with a greater degree of conformational freedom and yields more‐flexible channel surfaces that may easily adapt to a series of potential guest molecules.     

Ab‐Initio study of Helium‐small carbon cage systems

The traditional method for opening the electron shells of noble gas atoms involves a strong electronegative atom or group. However, this approach is limited to only heavy noble‐gas atoms, such as Kr and Xe. In this paper, we performed accurate calculations of He@C₈H₈ and He@C10H16 and showed the possibility of opening the electron shell of a light noble‐gas atom. © 2012 Wiley Periodicals, Inc.     

A p‐Quinodimethane‐Bridged Porphyrin Dimer

A p‐quinodimethane (p‐QDM)‐bridged porphyrin dimer 1 has been prepared for the first time. An unexpected Michael addition reaction took place when we attempted to synthesize compound 1 by reaction of the cross‐conjugated keto‐linked porphyrin dimers 8 a and 8 b with alkynyl/aryl Grignard reagents. Alternatively, compound 1 could be successfully prepared by intramolecular Friedel–Crafts alkylation of the diol‐linked porphyrin dimer 14 with concomitant oxidation in air. Compound 1 shows intense one‐photon absorption (OPA, λ_max=955 nm, ε=45400 M ^?1 cm^?1) and a large two‐photon absorption (TPA) cross‐section (σ⁽²⁾_max=2080 GM at 1800 nm) in the near‐infrared (NIR) region due to its extended π‐conjugation and quinoidal character. It also exhibits a short singlet excited‐state lifetime of 25 ps. The cyclic voltammogram of 1 displays multiple redox waves with a small electrochemical energy gap of 0.86 eV. The ground‐state geometry, electronic structure, and optical properties of 1 have been further studied by density functional theory (DFT) calculations and compared with those of the keto‐linked dimer 8 b . This research has revealed that incorporation of a p‐QDM unit into the porphyrin framework had a significant impact on its optical and electronic properties, leading to a novel NIR OPA and TPA chromophore.     

Phosphorus‐Containing Materials for Organic Electronics

Phosphorus‐based materials have received widespread attention in recent years, in particular as possible candidates for practical application in organic electronics. The geometry and electronic nature of phosphorus make it a favorable heteroatom for property tuning in order to obtain better performing organic electronics. This Focus Review discusses recent structural modifications and syntheses of phosphorus‐based materials, illustrates property tuning at the same time, and highlights specific examples for device applications.     

Photoswitchable Adhesives Using Azobenzene‐Containing Materials

Photoinduced reversible solid‐to‐liquid transitions of azobenzene‐containing materials can control adhesion. Photoswitchable adhesives based on azobenzene‐containing small molecules and polymers are under intense investigation. The melting points or glass transition temperatures of such azobenzene‐containing materials in trans and cis forms are above and below room temperature, respectively. Photoswitching of these materials results in reversible trans‐cis isomerization and solid‐to‐liquid transitions. The solid trans azobenzene‐containing materials have strong adhesion and the liquid cis azobenzene‐containing materials have weaker adhesion. In this Minireview, we introduce adhesives based on azobenzene‐containing small molecules and polymers. The remaining challenges and perspectives in the field of photoswitchable adhesives using azobenzene‐containing materials are also discussed.     

Synthesis of Thymidine Dimer Containing Novel (N‐Acetyl)imino Linkage

By starting with 3′‐keto‐5′‐O‐protected thymidine, 3′‐O‐amino‐5′‐t‐butyl‐diphenylsilyl thymidine ( 9 ) was prepared and coupled with 3′‐O‐t‐butyl‐diphenylsilyl‐5′‐formyl thymidine to form a nucleoside dimer ( 11 ) containing oxime linkage. The back bone of this dimer, then, under went reduction followed by acetylation to give an (N‐acetyl)imino linkage, and a novel dinucleotide ( 13 ) was obtained.     

Neo‐Fused Hexaphyrin: A Molecular Puzzle Containing an N‐Linked Pentaphyrin

The first neo‐confused hexaphyrin(1.1.1.1.1.0) was synthesized by oxidative ring closure of a hexapyrrane bearing two terminal “confused” pyrroles. The new compound displays a folded conformation with a short interpyrrolic C???N distance of 3.102 Å, and thus it readily underwent ring fusion to afford a neo‐fused hexaphyrin with an unprecedented 5,5,5,7‐tetracyclic ring structure. Furthermore, coordination of Cu^II triggered a ring opening/contracting reaction to afford a Cu^II complex of an N‐linked pentaphyrin derivative. The roles of reactive N? C bonds in the porphyrinoid macrocycles were demonstrated.     

A Family of Molecular Sieves Containing Framework‐Bound Organic Structure‐Directing Agents

Organic structure‐directing agents (OSDAs), such as quaternary ammonium cations and amines, used in the synthesis of zeolites and related crystalline microporous oxides usually end up entrapped inside the void spaces of the crystallized inorganic host lattice. But none of them is known to form direct chemical bonds to the framework of these industrially important catalysts and adsorbents. We demonstrate that ECR‐40, currently regarded as a typical silicoaluminophosphate molecular sieve, constitutes instead a new family of inorganic‐organic hybrid networks in which the OSDAs are covalently bonded to the inorganic framework. ECR‐40 crystallization begins with the formation of an Al–OSDA complex in the liquid phase in which the Al is octahedrally coordinated. This unit is incorporated in the crystallizing ECR‐40. Subsequent removal of framework‐bound OSDAs generates Al‐O‐Al linkages in a fully tetrahedrally coordinated framework.     

A Chemo‐Mechanical Tweezer for Single‐Molecular Characterization of Soft Materials

A new atomic force microscopy (AFM)‐based chemo‐mechanical tweezer has been developed that can measure mechanical properties of individual macromolecules in supramolecular assembly and reveal positions of azide‐containing polymers. A key feature of the new technology is the use of an AFM tip densely modified with 4‐dibenzocyclooctynols (chemo‐mechanical tweezer) that can react with multiple azide containing macromolecules of micelles to give triazole “clicked” compounds, which during retracting phases of AFM imaging are removed from the macromolecular assembly thereby providing a surface topographical image and positions of azide‐containing polymers. The force–distance curves gave mechanical properties of removal of individual molecules from a supramolecular assembly. The new chemo‐mechanical tweezer will make it possible to characterize molecular details of macromolecular assemblies thereby offering new avenues to tailor properties of such assemblies.     

On the Possibility of Endohedrally Helium‐doped TEX – A DFT Treatment

TEX is a caged, nitramine type explosive material. To envisage the response of its bonds against stretching, an inert atom, helium, is doped into interior cavity of TEX molecule. Density functional theory at the level of B3LYP/6‐31++G(d,p) was employed to investigate some physicochemical and quantum chemical properties of the helium‐doped TEX (He@TEX) and compared with TEX and TEX+He composite systems. The result of helium doping caused swelling of TEX cage but no bond rupture occurred. The doped helium atom acquired positive charge.     

Novel Bisthienylethene Containing Ferrocenyl‐Substituted Naphthalimide: A Photo‐ and Redox Multi‐Addressable Molecular Switch

A new photochromic bisthienylethene system (BTE? NAFc) is reported in which the ferrocene unit (Fc) is incorporated into a naphthalimide chromophore as the central ethene bridging unit. The incorporated Fc unit in the photochromic system of BTE? NAFc has several effects on optical properties, such as fluorescence‐modulation through photoinduced electron transfer (PET), a decrease in the photochromic cyclization quantum yield, and a selective two‐step oxidation process. The ability to drive ring‐opening and ring‐closing reactions with a secondary redox‐modulation provides increased functionality to the photochromic system. Based on these meaningful photo‐ and redox‐modulation properties, five unprecedented multi‐addressable states (BTE? NAFc, BTE? NAFc⁺, c‐BTE? NAFc, c‐BTE? NAFc⁺, and BTE⁺? NAFc⁺) and gated photochromism are successfully obtained within the unimolecular BTE platform, thus providing deeper insight into photochromic systems as multifunctional outputs.     

Room Temperature Processable Silicon‐Containing Molecular Resist

A novel silicon‐containing molecular resist material based on polyhedral oligomeric silsesquioxane, possessing trimethoxysilyl groups, was designed in order to reduce post‐exposure delay problems and to improve resolution. Since the acid‐catalyzed cross‐linking reaction of trimethoxysilyl groups occurs at room temperature, there is no necessity of post‐exposure bake. The molecular resist showed 0.7 µm line‐and‐space patterns using a mercury–xenon lamp in a contact printing mode and 100 nm line‐and‐space patterns using electron beam lithography.

     

Towards Magnetic Carbo‐meric Molecular Materials

Numerous studies have underlined the putative diradical character of π‐conjugated molecules that can be described by closed‐shell Lewis structures, for instance, p‐dimethylene p–n phenylenes, or long polyacenes. In the latter compounds, the only way to save the aromaticity of the six‐membered rings is to give up the Lewis electron pairing in the singlet biradical ground state. The present work considers the possibility of doing the same by using the basic C₂ units of carbo‐meric architectures. A series of acyclic and cyclic carbo‐meric architectures is studied by using UB3LYP DFT broken‐symmetry calculations, including spin decontaminations and subsequent geometry optimization of the singlet diradical. The C₂ units are shown to stabilize the singlet biradical by spin delocalization, two of them playing approximately the same role as one radical‐insulating 1,4 phenylene moiety. The results are generalized to the investigation of open‐shell polyradical singlet states of rigid hydrocarbon structures, the symmetry and rigidity of which can assist cooperativity and self spin polarization effect. Several synthesis targets with challenging magnetic/spin properties are suggested in the carbo‐mer series.     

Synthesis of a Thymidine Dimer Containing a Tetrazole‐2,5‐diyl Internucleosidic Linkage and Its Insertion into Oligodeoxynucleotides

Thymidine dimers in which the natural phosphodiester linkage has been replaced by a 2,5‐disubstituted tetrazole ring are synthesized and incorporated into oligodeoxynucleotides (ODNs). The synthesis is accomplished by two strategies based on an alkylation of 5′‐O‐trityl‐on and 5′‐O‐trityl‐off 3′‐deoxy‐3′‐(1H‐tetrazol‐5‐yl)thymidines with 5′‐iodo‐5′‐deoxythymidine in the presence of Et₃N, and the formation of only 2‐substituted tetrazol‐5‐yl linkages is observed in 89 and 46% yields, respectively. The nucleoside dimer formed is reacted with 4,4′‐dimethoxytrityl chloride (DMTCl), followed by treatment with 2‐cyanoethyl tetraisopropylphosphordiamidite in the presence of N,N‐diisopropylammonium tetrazolide, to afford the 5′‐O‐DMT‐protected dinucleoside phosphoramidite that is used for incorporation into ODNs on an automated DNA synthesizer. The modified ODNs with one and up to five tetrazole internucleosidic linkages are obtained in good yields. The thermal stability of DNA/DNA and DNA/RNA duplexes is studied by UV experiments and reported also.     

Molecular Thermal Hysteresis in Helix‐Dimer Formation of Sulfonamidohelicene Oligomers in Solution

Sulfonamidohelicene oligomers up to the nonamer level were synthesized by the repeated coupling reactions of a building block. A tetramer formed a helix dimer in 1,3‐difluorobenzene, which unfolded to a random coil with heating. This structural change exhibited thermal hysteresis in which different thermal responses were observed in the course of temperature increase and decrease. The feature of the hysteresis was examined under different heating/cooling modes, and the mechanisms are discussed on the basis of the population change and the presence of an induction period. A proposal regarding the use of thermal hysteresis for sensing a temperature increase/decrease is also given.