Theoretical Investigation of Adsorption Effects of Granisetron Anticancer Drug over BN(7,7-7) Nanotube as a Factor of Drug Delivery: a DFT Study

In the present work, the interaction between drug Granisetron(GRS) and BN(7,7-7) nanotube by density functional theory(DFT) calculations in the solvent water has been investigated. The non-bonded interaction effects of the molecule GRS with BN(7,7-7) nanotube on chemical shift tensors, natural charge and electronic properties such as the energy gap between HOMO and LUMO, global hardness, electronegativity and electronic chemical potential have been also detected. The natural bond orbital(NBO) analysis suggested that charge transfer depended between GRS and nanotube and induces a dipole moment in the complex. Then, the possibility of the use of BN(7,7-7) nanotube for GRS delivery to the diseased cells has been established.     

周期性密度泛函理论研究NO在CuCl(111)表面上的吸附

运用广义梯度密度泛函理论(GGA)的RPBE方法结合周期平板模型,在DNP基组下,研究了NO以N端和O端两种吸附取向在CuCl(111)表面上的吸附.通过对不同吸附位和不同覆盖度下的吸附能和几何构型参数的计算和比较发现:NO吸附在CuCl(111)表面Cu原子上的top位时为稳定的吸附;覆盖度为0.25 mL时吸附比较稳定;NO的N端吸附比O端吸附更有利,N端吸附时为化学吸附,O端吸附时为物理吸附.布居分析结果表明整个吸附体系发生了从Cu原子向NO分子的电荷转移,且O端吸附时电荷转移更多.N端吸附和O端吸附时,N-O键的伸缩振动频率均红移,同时O端吸附时红移更多.     

Antioxidant Properties of Substituted Thymols and Their Adsorption on Aluminum Phosphide(AlP) Nanotube(8,0) as Controlled Drug Delivery Device: Theoretical Study in Gas Phase and Ethanol

We have studied the adsorption of thymol derivatives on AlP-nanotube surface by using density functional calculations in gas phase. Also the antioxidant activity of thymol was investigated in gas phase and ethanol. The effects of NMe2, OEthyl and Me substituents on the antioxidant activity and adsorption ability of thymol on AlP-nanotube were investigated. Results show that AlP-nanotube can effectively interact with substituted thymols, so their adsorptions are exothermic and experimentally possible from the energetic viewpoint. Results also show that, replacing NMe2 group in the x position of thymol may be a good strategy to improve the sensitivity of thymol toward AlP-nanotube surface. The NMe2 and OEthyl substitutions decrease the BDE and IP values and increase the antioxidant activity of thymol. The BDE and IP values of thymols have linear dependencies with corresponding Ead values. These can be utilized to select novel thymol derivatives with higher antioxidant activity and drug delivery ability.     

Theoretical Encapsulation of Fluorouracil (5-FU) Anti-Cancer Chemotherapy Drug into Carbon Nanotubes (CNT) and Boron Nitride Nanotubes (BNNT)

Introduction: Chemotherapy with anti-cancer drugs is considered the most common approach for killing cancer cells in the human body. However, some barriers such as toxicity and side effects would limit its usage. In this regard, nano-based drug delivery systems have emerged as cost-effective and efficient for sustained and targeted drug delivery. Nanotubes such as carbon nanotubes (CNT) and boron nitride nanotubes (BNNT) are promising nanocarriers that provide the cargo with a large inner volume for encapsulation. However, understanding the insertion process of the anti-cancer drugs into the nanotubes and demonstrating drug-nanotube interactions starts with theoretical analysis. Methods: First, interactions parameters of the atoms of 5-FU were quantified from the DREIDING force field. Second, the storage capacity of BNNT (8,8) was simulated to count the number of drugs 5-FU encapsulated inside the cavity of the nanotubes. In terms of the encapsulation process of the one drug 5-FU into nanotubes, it was clarified that the drug 5-FU was more rapidly adsorbed into the cavity of the BNNT compared with the CNT due to the higher van der Waals (vdW) interaction energy between the drug and the BNNT. Results: The obtained values of free energy confirmed that the encapsulation process of the drug inside the CNT and BNNT occurred spontaneously with the free energies of −14 and −25 kcal·mol⁻¹, respectively. Discussion: However, the lower value of the free energy in the system containing the BNNT unraveled more stability of the encapsulated drug inside the cavity of the BNNT comparing the system having CNT. The encapsulation of Fluorouracil (5-FU) anti-cancer chemotherapy drug (commercial name: Adrucil^®) into CNT (8,8) and BNNT (8,8) with the length of 20 Å in an aqueous solution was discussed herein applying molecular dynamics (MD) simulation.     

Boron nitride nanotube (BNNT) as a sensor of hydroperoxyl radical (HO<Subscript>2</Subscript>): A DFT study

In this present study, the adsorption behavior of HO₂ radical on the exterior surface of (5, 0) zigzag boron nitride nanotube (BNNT) has been investigated. The electronic structures and geometries of studied complexes were calculated at B3LYP-D3/6-31++G (d, p) computational level. The value of adsorption energy for the most stable configuration (A) is obtained ?0.68 eV, indicating physisorption process. Meaningful change of HOMO–LUMO gap after adsorption confirming BNNT can be introduced as a promising sensor for sensing of HO₂ radical.     

Adsorption and Hydrogenation Process of p-Chloronitrobenzene on Au_(20) Cluster:a DFT Study

We have systematically investigated the adsorption and hydrogenation process of p-chloronitrobenzene on Au20 cluster using density functional theory-DFT) calculations.The adsorption of two types of all species,vertical adsorption and parallel adsorption,is compared,revealing that former model is more stable than the latter,and all of the species prefer to adsorb at the vertex site.After adsorption,electrons transferred from Au20 cluster to the p-chloronitrobenzene molecule.Almost all hydrogenation processes are exothermic,and the C–Cl bond scissions are considered as the rate-limiting step for both Paths A-p-CNB→p-CAN→AN) and B-p-CNB→NB→AN) with the energy barriers of 2.62 and 2.95 e V,respectively.These suggest that the C–Cl bond scission is not easy to occur on Au20 cluster due to the high energy barrier,especially the path B.The p-chloroaniline is the main hydrogenation product catalyzed by Au20.     

甲醇在SnO2(110)表面的吸附与解离的理论研究

研究气体分子在固体表面吸附过程的化学和物理性质在气体传感器研究方面有着重要的意义,尤其是一些小分子与氧化物的作用受到人们广泛的关注.SnO2具有特殊的表面性质,是适合用于催化有机物的光催化剂,同时由于SnO2在易燃易爆危险气体和有机物的检测等方面有着特殊而广阔的应用前景,成为化学工作者研究的热点[1-3].     

Antioxidant Activity of Sesamol Derivatives and Their Drug Delivery via C60 Nanocage: a Theoretical Study

The antioxidant activity of sesamol derivatives and their drug delivery via fullerene were investigated. Fullerene can interact with sesamol derivatives, and their adsorptions were possible from the energetic viewpoint. Adding the NH_2 group to sesamol can improve the sensitivity of sesamol toward fullerene surface. The NH_2 and OMe substitutions increase the antioxidant activity of sesamol. The results can also be used to select novel sesamol derivatives with higher antioxidant activity and higher drug delivery ability.     

七元瓜环作为5-氨基水杨酸结肠给药载体可行性考察

利用荧光光谱法考察了七元瓜环(Q[7])和5-氨基水杨酸(5-ASA)在不同pH条件下的相互作用. 在pH＝2.0, 4.0时, Q[7]与5-ASA可形成1∶1(物质的量比)的包合物; 而在pH＝5.0, 6.0, 7.4 时未观察到两者之间有明显的相互作用. 利用¹H NMR 技术研究了Q[7]-5-ASA固体包合物不同pH值的存在形式. 当体系的pH＜6.0, 5-ASA以包合物的形式存在. 而当pH＞6.0, 包合物的稳定性下降, 5-ASA被释放出来以游离的药物分子形式存在, 说明5-ASA与Q[7]之间的相互作用依赖于体系的pH值, Q[7]可作为5-ASA结肠给药的一种潜在载体; 热动力学的研究表明包合作用主要受到体系焓变的影响; 红外光谱, DSC和TG的分析进一步证实了Q[7]-5-ASA固体包合物的形成.     

Synthesis and Biological Activity of N-Aryl(alkyl)-2-[2-(9H-fluoren-9-ylidene)hydrazinylidene]-5,5-dimethyl-4-oxohexanamides

Russian Journal of General Chemistry - Ring opening of 5-tert-butyl-3-[(9H-fluoren-9-ylidene)hydrazinylidene]furan-2(3H)-one by the action of primary amines afforded a series of new...     

Theoretical Investigation by DFT and Molecular Docking of Synthesized Oxidovanadium(IV)-Based Imidazole Drug Complexes as Promising Anticancer Agents

Vanadium compounds have been set in various fields as anticancer, anti-diabetic, anti-parasitic, anti-viral, and anti-bacterial agents. This study reports the synthesis and structural characterization of oxidovanadium(IV)-based imidazole drug complexes by the elemental analyzer, molar conductance, magnetic moment, spectroscopic techniques, as well as thermal analysis. The obtained geometries were studied theoretically using density functional theory (DFT) under the B3LYP level. The DNA-binding nature of the ligands and their synthesized complexes has been studied by the electronic absorption titrations method. The biological studies were carried with in-vivo assays and the molecular docking method. The EPR spectra asserted the geometry around the vanadium center to be a square pyramid for metal complexes. The geometries have been confirmed using DFT under the B3LYP level. Moreover, the quantum parameters proposed promising bioactivity of the oxidovanadium(IV) complexes. The results of the DNA-binding revealed that the investigated complexes bind to DNA via non-covalent mode, and the intrinsic binding constant (K_b) value for the [VO(SO₄)(MNZ)₂] H₂O complex was promising, which was 2.0 × 10⁶ M⁻¹. Additionally, the cytotoxic activity of the synthesized complexes exhibited good inhibition toward both hepatocellular carcinoma (HepG-2) and human breast cancer (HCF-7) cell lines. The results of molecular docking displayed good correlations with experimental cytotoxicity findings. Therefore, these findings suggest that our synthesized complexes can be introduced as effective anticancer agents.     

9-(4-Bromophenyl)-9-fluorenyl as a safety-catch nitrogen protecting group

[reaction: see text] The 9-(4-bromophenyl)-9-fluorenyl (BrPhF) group has been developed as a novel safety-catch amine protection. This relatively acid-stable protecting group can be successfully activated by palladium-catalyzed cross-coupling reaction of the aryl bromide with morpholine and then cleaved effectively under mild conditions using dichloroacetic acid and triethylsilane. Complementary conditions are reported for selective removal of the BrPhF group in the presence of tert-butyl esters and carbamates as well as deprotection of tert-butyl esters and carbamates in the presence of BrPhF amines.     

A DFT Study of Thiophene Adsorption on the Rh（111） Surfaces

Thiophene adsorption on the Rh(111) surfaces has been investigated by density functional theory.The results show that the adsorption at the hollow and bridge sites is the most stable.The molecular plane of the thiophene ring is distorted,the C=C bond is stretched to 1.448  and the C-C bond is shortened to 1.390.The C-H bonds tilt 22～42oaway from the surface.The calculated adsorption geometries are in reasonable agreement with population analysis and density of states.The thiophene molecule obtains 0.74 electrons,reflecting the interaction between the lone pair of sulfur and the d-orbitals of metal.The reaction paths and transition states for desulfurization of the molecule have been investigated.The bridge adsorption structure of thiophene leads to a thiol via an activated reaction with an energetic barrier of 0.30 eV.This second step is slightly difficult,and dissociation into a C4H4 fragment and a sulfur atom is possible,with an energetic barrier of 0.40 eV.     

Theoretical Study on the Adsorption and Hydrogenation Mechanism of 2-Methylthiophene over the Pt(111) Catalyst

The adsorption process and hydrogenation mechanisms of 2-methylthiophene on the Pt(111) surface have been elucidated using density functional theory(DFT). The optimal adsorption sites of reactants, intermediates, and products as well as the activation energy and reaction energy of each elementary reactions were investigated. The results turned out that the 2-methylthiophene tilt to the Pt(111) catalyst with the C_1–C_2 double bond at the top site was the most stable. During the hydrogenation process, the heat of reaction almost located at the negative side, so dropping the temperature is good for the occurrence of hydrogenation process. The hydrogenation steps of mechanism take place along C_2→C_3→C_1→C_4→S→C_1 to generate the product of pentane-2-thiol, in which the first step with the highest energy barrier is the rate-determining step.     

Theoretical Prediction of Adsorption Properties of Carmustine Drug on Various Sites of the Outer Surface of the Single-Walled Boron Nitride Nanotube and Investigation of Urea Effect on Drug Delivery by DFT and MD

In this work, the adsorption behavior of Carmustine (BCNU) drug over the (6,0) zigzag single-wall boron nitride nanotube (SWBNNT) is studied by means of density functional theory calculations and molecular dynamics simulations (MD). The calculated adsorption energies proved that the adsorption of BCNU molecule on SWBNNT is a physisorption process. The natural bond orbital calculations demonstrated that existence of a charge transfer from the SWBNNT to the BCNU molecule. Moreover, quantum theory of atoms in molecules showed that the hydrogen bonds and electrostatic interactions are two major factors contributed to the overall stabilities of the complexes. Furthermore, interaction of BCNU with the surface of single wall BNNT at 310 K and 1 bar in the present of water and different concentration of Urea molecules has been studied by MD simulation. The MD results confirm that the highest number of hydrogen bond and the lowest value of Lennard-Jones (L-J) energy between nanotube and drug exist in the simulation system with concentration of 1 mol L^?1 Urea.     

Poly(ethylene glycol) in Drug Delivery: Pros and Cons as Well as Potential Alternatives

Poly(ethylene glycol) (PEG) is the most used polymer and also the gold standard for stealth polymers in the emerging field of polymer‐based drug delivery. The properties that account for the overwhelming use of PEG in biomedical applications are outlined in this Review. The first approved PEGylated products have already been on the market for 20 years. A vast amount of clinical experience has since been gained with this polymer—not only benefits, but possible side effects and complications have also been found. The areas that might need consideration and more intensive and careful examination can be divided into the following categories: hypersensitivity, unexpected changes in pharmacokinetic behavior, toxic side products, and an antagonism arising from the easy degradation of the polymer under mechanical stress as a result of its ether structure and its non‐biodegradability, as well as the resulting possible accumulation in the body. These possible side effects will be discussed in this Review and alternative polymers will be evaluated.     

DFT Study of Thiophene Adsorption on the Pd（111） and Pt（111） Surfaces

Thiophene adsorption on the(111) surfaces of Pd and Pt have been investigated by density functional theory.The results indicate that the adsorption at the hollow sites is the most stable.To our interest,the molecular plane of thiophene ring is distorted with C=C bond being elongated to 1.450  and C-C bond being shortened to 1.347 ,and the C-H bonds tilt 13.91～44.05o away from this plane.Furthermore,analysis on population and density of states verified the calculated adsorption geometries.Finally,charge analysis suggests that thiophene molecule is an electron acceptor,reflecting the interaction between the lone pair of sulfur and the d-orbitals of metal.     

A DFT Study of 2-Bromothiophene Adsorption on the Rh(111) Surface

<正>Adsorption behaviors of 2-bromothiophene on the Rh(111)surface were discussed with DFT.The results revealed that adsorption at the parallel hol site and bridge site was the most stable.After adsorption,bond length of 2-bromothiophene changed significantly.Molecular plane was distorted,and C-H(Br,S)in the molecule was oblique and upswept against the metal surface.Vertical adsorption site was less stable than the plane adsorption site,but there was no distortion for the thiophene ring after adsorption.Aromaticity of 2-bromothiophene was destroyed at the hol and bridge adsorption sites,and the carbon atom in the thiophene ring presented quasi-sp~3 hybridization.After adsorption at the parallel hol,2-bromothiophene obtained 0.86 electrons in total,and Rh(111)surface lost 2.08 electrons in all.     

DFT Study of Alkali Metal Atom Adsorption on Defect-Free MgO(001) Surface

The adsorption of isolated alkali metal atoms (Li, Na, K, Rb, and Cs) on defect-free sur-face of MgO(001) has been systemically investigated with density functional theory using a pseudopotential plane-wave approach. The adsorption energy calculated is about -0.72 eV for the lithium on top of the surface O site and about one third of this value for the other alkali metals. The relatively strong interaction of Li with the surface O can be explained by a more covalent bonding involved, evidenced by results of both the projected density of states and the charge density difference. The bonding mechanism is discussed in detail for all alkali metals.     

甲醇在Pt-Fe(111)/C表面吸附的理论研究

采用密度泛函理论和周期平板模型相结合的方法, 对CH3OH分子在Pt-Fe(111)/C表面top, fcc, hcp和bridge位的吸附模型进行了构型优化、能量计算, 结果表明bridge位是较有利的吸附位. 掺杂后费米能级的位置发生了右移, 价带和导带均增宽, 极利于电子-空穴的迁移, 这对提高催化活性是非常有利的. 考察抗中毒性发现: CO在Pt(111)/C面上的吸附能比甲醇吸附能要高, CO在Pt-Fe(111)/C的吸附能比甲醇吸附能要低, 可说明CO在Pt(111)/C面上有中毒效应, 而Pt-Fe(111)/C的抗CO中毒能力增强, 是催化氧化甲醇良好的催化剂.