‘Hierarchical self-assembly’ of helical amylose/SWNTs complex

Helical amylose/SWNTs complexes (A/S-C) of various sizes, a single nanotube wrapped by amylose in particular, were demonstrated. The formation process of the helical A/S-C was further explained by a novel hierarchical self-assembly model, including the wrapping of amylose chains around SWNT and the hierarchical self-assembly of wrapped-SWNTs into the superstructural A/S-C. Besides the hydrophobic interaction, the hydrogen bonding also plays a certain role in the self-assembly process. Supported by the National Natural Science Foundation of China (Grant No. 60577049) and Shanghai Municipal Science and Technology Commission (Grant Nos. 034319224 and 0652nm017)     

Mononuclear, helical binuclear palladium and lithium complexes bearing a new pyrrole-based NNN-pincer ligand: fluxional property

A new pyrrole based NNN-pincer ligand, 2,5-bis(3,5-dimethylpyrazolylmethyl)pyrrole 2, was readily synthesized in two steps from pyrrole in 56% yield. The lithiation of the pincer ligand 2 using n-BuLi led to isolation of the dimeric lithium complex, [Li{μ-C(4)H(2)N-2,5-(CH(2)Me(2)pz)(2)-N,N,N}](2) 4, in 23% crystalline yield. The transmetalation reaction of 4 with [Pd(PhCN)(2)Cl(2)] afforded the mononuclear Pd(II) complex, [PdCl{C(4)H(2)N-2,5-(CH(2)Me(2)pz)(2)-N,N,N}] 5, containing one chloride ion in 45% yield. Alternatively 5 was obtained in an excellent yield of 87% by the reaction 2 of with [Pd(COD)Cl(2)] in the presence of triethylamine. On the contrary, a 20-membered macrometalacyclic molecule, [Pd(2)Cl(4){μ-C(4)H(3)N-2,5-(CH(2)Me(2)pz)(2)-N,N}(2)] 6, in which two PdCl(2) units are bridged by two molecules of 2 to give a helical structure, was synthesized by the reaction of 2 with [Pd(COD)Cl(2)] in the absence of base. The acetate analogue of complex 5, [Pd(OAc){C(4)H(2)N-2,5-(CH(2)Me(2)pz)(2)-N,N,N}] 3, was obtained by the treatment of 2 with [Pd(OAc)(2)]. The pyrrole twist angle of 5 is higher than that of 3. Complexes 3 and 5 show an AB pattern for their methylene protons at room temperature in CDCl(3) as well as in DMSO-d(6). The variable temperature NMR studies showed that the acetate and chloride complexes exhibit slightly different coalescence temperatures, which is a solvent dependent phenomenon, and twist angles.     

Cation‐Controlled Formation and Interconversion of the fac/fac and mer/mer Stereoisomers of a Triple‐Stranded Helicate

Two biscatecholester ligands with oligoether spacers were used to prepare dinuclear titanium(IV) triscatecholate based helicates. In the case of Li₄[( 1 / 2 )₃Ti₂], “classical” helicates with three internally bound Li⁺ ions and syn‐oriented ligands in the complex units (fac/fac isomer) were obtained. In the case of the sodium salt Na₄[( 2 )₃Ti₂], a different homochiral dinuclear triple‐stranded helicate with two internally bound Na⁺ ions was formed. The complex units are anti‐configured, and two of the ligand spacers are connecting internal with external positions of the helicate (mer/mer isomer). Removal of the sodium ions and addition of lithium ions leads to the switching from one topology to the other with an expanded helicate [( 2 )₃Ti₂]^4? as an intermediate. Switching back to the “non‐classical” helicate cannot be observed because severe structural rearrangements would be required.     

Three-component self-assembly of a series of triply interlocked Pd12 coordination prisms and their non-interlocked Pd6 analogues

Template-assisted formation of multicomponent Pd(6) coordination prisms and formation of their self-templated triply interlocked Pd(12) analogues in the absence of an external template have been established in a single step through Pd-N/Pd-O coordination. Treatment of cis-[Pd(en)(NO(3))(2)] with K(3) tma and linear pillar 4,4'-bpy (en=ethylenediamine, H(3) tma=benzene-1,3,5-tricarboxylic acid, 4,4'-bpy=4,4'-bipyridine) gave intercalated coordination cage [{Pd(en)}(6)(bpy)(3)(tma)(2)](2)[NO(3)](12) (1) exclusively, whereas the same reaction in the presence of H(3) tma as an aromatic guest gave a H(3) tma-encapsulating non-interlocked discrete Pd(6) molecular prism [{Pd(en)}(6)(bpy)(3)(tma)(2)(H(3)tma)(2)][NO(3)](6) (2). Though the same reaction using cis-[Pd(NO(3))(2)(pn)] (pn=propane-1,2-diamine) instead of cis-[Pd(en)(NO(3))(2)] gave triply interlocked coordination cage [{Pd(pn)}(6)(bpy)(3)(tma)(2)](2)[NO(3)](12) (3) along with non-interlocked Pd(6) analogue [{Pd(pn)}(6)(bpy)(3) (tma)(2)](NO(3))(6) (3'), and the presence of H(3) tma as a guest gave H(3) tma-encapsulating molecular prism [{Pd(pn)}(6)(bpy)(3)(tma)(2)(H(3) tma)(2)][NO(3)](6) (4) exclusively. In solution, the amount of 3' decreases as the temperature is decreased, and in the solid state 3 is the sole product. Notably, an analogous reaction using the relatively short pillar pz (pz=pyrazine) instead of 4,4'-bpy gave triply interlocked coordination cage [{Pd(pn)}(6) (pz)(3)(tma)(2)](2)[NO(3)](12) (5) as the single product. Interestingly, the same reaction using slightly more bulky cis-[Pd(NO(3))(2)(tmen)] (tmen=N,N,N',N'-tetramethylethylene diamine) instead of cis-[Pd(NO(3))(2)(pn)] gave non-interlocked [{Pd(tmen)}(6)(pz)(3)(tma)(2)][NO(3)](6) (6) exclusively. Complexes 1, 3, and 5 represent the first examples of template-free triply interlocked molecular prisms obtained through multicomponent self-assembly. Formation of the complexes was supported by IR and multinuclear NMR ((1)H and (13)C) spectroscopy. Formation of guest-encapsulating complexes (2 and 4) was confirmed by 2D DOSY and ROESY NMR spectroscopic analyses, whereas for complexes 1, 3, 5, and 6 single-crystal X-ray diffraction techniques unambiguously confirmed their formation. The gross geometries of H(3) tma-encapsulating complexes 2 and 4 were obtained by universal force field (UFF) simulations.     

Synthesis and self-assembly of phthalocyanines bearing sulfur-containing substituents简

Asymmetrically substituted phthalocyanines with sulfur-containing substituents for fabrication of selfassembled monolayers were synthesized. Phthalocyanine 7, bearing a disulfide group, was synthesized from phthalocyanine with a hydroxyl group, which was prepared via mixed condensation of the corresponding substituted phthalonitriles. Phthalocyanine 10, bearing an acetyl protected thiol group, was synthesized through the Pd-catalyzed coupling reaction of an iodophthalocyanine. Their selfassembling behavior on gold substrates was further studied by UV–vis spectroscopy.     

Solvent-dependent conformational and fluorescence change of an N-phenylbenzohydroxamic acid derivative bearing two pyrene moieties

The conformation of N-phenylbenzohydroxamic acid has been reported to change depending on the solvent properties. Here, we newly synthesized N-phenylbenzohydroxamic acid derivative, which contains two pyrene moieties separated from the phenyl rings by ethylene linkers. It showed solvent-dependent conformational change, and its fluorescence was also solvent-dependent, that is, only monomer fluorescence of pyrene was observed in DMSO or DMF, whereas the excimer fluorescence was observed in CH₂Cl₂ or CHCl₃. Thus, the structural characteristics could be converted to fluorescence change as output, which would be a good candidate as a fluorescent sensor.     

Formation of helical superstructures from a semi-fluorinated alkoxysilane through a surface and solution self-assembly process

Helical superstructures were obtained through a surface and solution self-assembly process when a semi-fluorinated alkoxysilane modified silicon wafer was immersed in water of pH values ranging from 5.0 to 7.0 for more than one month.     

Lattice self-assembly of cyclodextrin complexes and beyond

While lipids form soft, fluidic membranes (soft assembly), proteins can readily assemble into rigid, crystalline structures such as viral capsids and bacterial compartments (lattice assembly). The key difference has to do with the driving forces, where the former is driven by the weak, directionless hydrophobic effect and the latter, by a combination of relatively strong, directional intermolecular interactions. In synthetic systems, the lipid assembly has been massively replicated but the protein assembly has been rarely rivaled. Herein, we briefly review these two kinds of assemblies with special emphasis on a recently reported lattice self-assembly system of cyclodextrin complexes. The complexes arrange themselves into an in-plane, rhombic lattice that develops into lamellar, tubular, and polygonal structures depending on concentration. We will then cover the formation mechanisms, driving forces, and an application of the tubes in particle encapsulation. We hope that this short review would draw people's attention to this emerging field of lattice self-assembly.     

Supramolecular helical columns from the self-assembly of chiral rods

Chiral-bridged rod molecules (CBRs) that consisted of bis(penta-p-phenylene) conjugated to an opened or closed chiral bridging group as a rigid segment and oligoether dendrons as flexible segments were synthesized and characterized. In the bulk state, both molecules self-assemble into a hexagonal columnar structure, as confirmed by X-ray scatterings and transmission electron microscopy (TEM) observations. Interestingly, these structures display opposite Cotton effects in the chromophore of the aromatic unit in spite of the same chirality (R,R) of the chiral bridging groups. The molecules were observed to self-assemble into cylindrical micellar aggregates in aqueous solution, as confirmed by light scattering and TEM investigations, and exhibit intense signals in the circular dichroism (CD) spectra, which are indicative of one-handed helical conformations. The CD spectra of each molecule showed opposite signals to each other, which were similar to those in the bulk. Notably, when the opened CBR was added to a solution of closed CBRs up to a certain concentration, the CD signal of the closed CBR was amplified. This implies that both molecules co-assemble into a one-handed helical structure because the opened chiral bridge is conformationally flexible, which is inverted to co-assemble with the closed CBR. These results demonstrate that small structural modifications of the chiral moiety can transfer the chiral information to a supramolecular assembly in the opposite way.     

Photophysical properties and excitation polarization of fac/mer-ruthenium complexes with 5'-amino-2,2'-bipyridine-5-carboxylic acid derivatives

Novel ruthenium(II) complexes, fac/mer-[Ru(MeCO-5Bpy-R)3]2+ (H-5Bpy-OH = 5'-amino-2,2'-bipyridine-5-carboxylic acid; R = -NHtBu, -NH(cHex), -N(cHex)2), have been synthesized. The fac and mer isomers have been successfully separated using HPLC techniques, and their photophysical/electrochemical properties have been investigated. In the absorption and emission spectra of fac/mer-[Ru(MeCO-5Bpy-R)3]2+ with secondary amines (R = -N(cHex)2) in acetonitrile at room temperature, the maximum wavelengths based on the MLCT are longer than those for the amide derivatives with primary amines (R = -NHtBu, -NH(cHex)). A small solvent effect on the photophysical properties between fac- and mer-[Ru(MeCO-5Bpy-NHtBu)3]2+ has been observed. The excitation polarization spectra, giving P values reflecting the relation between the absorption and the emission oscillators, for the fac- and mer-ruthenium(II) complexes (C3 and C1 symmetry, respectively) have been measured for the first time. Almost no difference in the excitation polarization spectra between the fac and mer complexes is found, and these spectra are similar to that for [Ru(bpy)3]2+ with D3 symmetry. This finding suggests that the orientations of the absorption and emission oscillators, in the case of the ruthenium(II) tris(2,2'-bipyridine) derivatives, would not be affected by the symmetries of the complexes and that the P values for any derivatives would be similar to that for [Ru(bpy)3]2+.     

Hierarchical and helical self-assembly of ADP-ribosyl cyclase into large-scale protein microtubes

Proteins are macromolecules with characteristic structures and biological functions. It is extremely challenging to obtain protein microtube structures through self-assembly as proteins are very complex and flexible. Here we present a strategy showing how a specific protein, ADP-ribosyl cyclase, helically self-assembles from monomers into hexagonal nanochains and further to highly ordered crystalline microtubes. The structures of protein nanochains and consequently self-assembled superlattice were determined by X-ray crystallography at 4.5 A resolution and imaged by scanning electron microscopy. The protein initially forms into dimers that have a fixed size of 5.6 nm, and then, helically self-assembles into 35.6 nm long hexagonal nanochains. One such nanochain consists of six dimers (12 monomers) that stack in order by a pseudo P6(1) screw axis. Seven nanochains produce a series of large-scale assemblies, nanorods, forming the building blocks for microrods. A proposed aging process of microrods results in the formation of hollow microstructures. Synthesis and characterization of large scale self-assembled protein microtubes may pave a new pathway, capable of not only understanding the self-assembly dynamics of biological materials, but also directing design and fabrication of multifunctional nanobuilding blocks with particular applications in biomedical engineering.     

Acid-base-induced fac → mer isomerization of luminescent iridium(iii) complexes

Luminescent Ir(C^N)₃ complexes (C^N = cyclometalated arylpyridine ligand) exist in the form of two stable isomers with distinct photophysical and electrochemical properties: fac and mer. Herein, we show that fac-Ir(C^N)₃ complexes can be converted into the thermodynamically less stable mer forms by a consecutive reaction with first acid and then base. The chemically induced isomerization is fast, quantitative, and stereoselective, and it can be inversed by light. The new isomerization process opens the possibility to use highly luminescent Ir(C^N)₃ complexes as molecular switches.

From fac to mer and back: a clean, fast and simple procedure for the transformation of fac-Ir(C^N)₃ complexes into the thermodynamically less stable mer isomers is described. The process enables the interconversion of luminophores with distinct photophysical properties.     

Zirconium complexes bearing a tetradentate dipyrrolyl ligand

Using a tetradentate, dianionic ligand several new zirconium complexes have been prepared. These pyrrolyl compounds, unlike their titanium analogues, are inactive in hydrohydrazination catalysis. However, they are quite stable, and their reactivity with H2NR, where R = Ph, C6H11, and NHPh, is reported here. Two of the complexes were characterized by X-ray diffraction.     

Rational design of a nanoscale helical scaffold derived from self-assembly of a dimeric coiled coil motif

We describe a model for the design of synthetic α-helical peptides that are competent for self-assembly into structurally defined supramolecular fibrils on the basis of architectural features that have been programmed into the peptide sequence. In order to test the validity of this experimental model, we have synthesized an oligopeptide YZ1 that was designed to conform to this model and to self-assemble into an α-helical fibril in which the structural sub-units that comprise the fibril corresponded to coiled coil dimers. Peptide YZ1 was prepared via conventional solid-phase peptide synthesis and was composed of 42 amino acid residues such that the sequence defined six distinct heptad repeats of a coiled coil structure. The sequence of YZ1 was designed to adopt an α-helical conformation in which the helical protomers self-associate in a parallel orientation with a staggered orientation between adjacent peptides that corresponded to an axial displacement of three heptads. The self-assembly of peptide YZ1 was examined at varying levels of structural hierarchy for compliance of the observed structures with the experimental model. Circular dichroism spectroscopy provided evidence for an α-helical coiled coil structure for YZ1 in aqueous solution, which could be reversibly denatured through thermal methods. TEM measurements indicated the formation of long aspect-ratio fibers of uniform diameter from aqueous solutions of YZ1, however the dimensions of the fibers suggested that lateral association occurred between the fibrils corresponding to the 2-stranded helical bundles. The α-helical coiled coil structure was confirmed in the solid-state for fibers derived from self-assembly of YZ1 by a combination of wide-angle X-ray diffraction and ¹³C CP/MAS NMR spectroscopy. SANS and synchrotron SAXS measurements on dilute aqueous solutions of YZ1 provided a fibril diameter that corresponded to the lateral dimensions estimated for a dimeric coiled coil assembly on the basis of structural determinations of model peptides.     

Grubbs and Hoveyda-type ruthenium complexes bearing a cyclic bent-allene

Stable cyclic bent-allene 1 displaces the chelating ether linkage of the Hoveyda-Grubbs-type ruthenium complex 2 bearing triphenylphosphine. The resulting complex 3 features an unusual cis-arrangement of the phosphine and the cyclic bent-allene, while retaining a distorted square pyramidal geometry around the ruthenium center. Monitoring by ³¹P NMR spectroscopy the reaction of cyclic bent-allene 1 with the indenylidene bis(triphenylphosphine)ruthenium dichloride complex 4 allowed for the observation of dissociated triphenylphosphine, and the formation of a ruthenium complex featuring 1 and triphenylphosphine in the desired trans-configuration. However, continued reaction times saw the disappearance of this complex, and after workup complex 5 featuring a cis-arrangement was isolated.     

Design and self-assembly of ditopic and tetratopic cavitand complexes

The self-assembly of open ditopic and tetratopic cavitand complexes has been investigated by using monofunctionalized cavitand ligands and suitable metal precursors. In the case of ditopic complexes, self-assembly protocols, leading exclusively to the formation of both thermodynamically stable cis-Pt square-planar complexes 8 and 9 and the kinetically inert fac-Re octahedral complex 14, have been elaborated. The use of cis-[Pt(CH3)CN)2Cl2] as metal precursor led to the formation of monotopic trans-10 and ditopic trans-11 cavitand complexes, while cis-[Pt(dmso)2Cl2] afforded both cis-13 and trans-11 isomers. The self-assembly of tetratopic cavitand complexes has been achieved by using mononuclear [Pd(CH3CN)4(BF4)2] and dinuclear [M2(tppb)(OTf)4] (19: M = Pt; 20: M = Pd) metal precursors. Only the tetratopic dinuclear complexes 21 and 22 were stable. The ligand configuration with two phosphorus and two cavitand ligands at the metal centers is the most appropriate to build tetratopic cavitand complexes with sufficient kinetic stability.